Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009523

Physical Location & Seq

Genomic Coordinates Reverse (-)

20740121 .. 20742857

Gene Structure 2737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G241100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAGACCCCGAACCAGATTCAAATCGACCTTGGTAATCTCATGGCCTTCGACCCTCATCACCACTTCCCCTCAATCCCCTCCTCCAGGGAGGAATTAGTGAAGGAATGTCTAACAAAAGGCACTGAGTTGGTTCAATCGATTGCGGACAAACTTTTCAACTTACCTTCAACTGAAGACATAGATGGTCCCCTTGTGCAGTTGCCTCGTCCAGAAACTAAATTGCCCAGAGAGAAGCATCTTCCAGTGCCTAAACCTCCTACAAAATGGGAAGTGTTTGCCAAAGCGAAAGGTATAAAGAATCGTAAAAGAGACAAGGTTGCATATGATGAGCCAAGTCAGTCGTGGAAACGTCGCTTTGGATATGATCGTGCAAACGATGAGAATAGTGTGCCTATCATTGAGGCGAAGATGACTGATGTGCCAGGGGAAGATCCTTTTGCTAAAAGACAAGATGAAAAAAAGAAACGAGTTGAAAAACAAGACAAAAATAGGTTGCAGAACTTGAAGCAAGCTGCAAAAGTTGGTGCTCTGCCAAGTCATGTTCAACTAGCTGCTACAAGGTTGCCCATAACGGGAACCCAGGCTGCACCTAAGAAGGTTACTAAAGATGAATTGGGGAATGTAGCTGGAATAGCAGCAACTGCAACGGCCAGTGGTGGAAAGTTTGACAAGAAATTGCCAGGCGAAAAGCCTTCTAAACATAAAGGAAAGTTTCGCAAGTTTTTACCAGTTGTAGAAGGAAAGGGCAAACACTCGCAAGAGAAGGAGCAAACAGAGAAAGTTCTGAACAAGCTAATGTCTAAGAATTCCCATGAGATACTTAATGTTGATAAGGCTGTTAACATGTATAATGTCAAGAAAGACAAGAAACGAAAGAACAGACCGGAGAAGTCTCCAGCATCCTCGAGCAAGTTGAAACCAAAGAAGAACCTTCACAAGAAGCCATTAAAGAAGGGATCTTCAAGTAAAAGCAAGGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRS1

Protein Analysis

329

Amino Acids

36.76

Weight (kDa)

10.0

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37990
fragaria_vesca	FvH4_1g03500
malus_domestica	MD02G1034000.v1.1 MD15G1174800.v1.1
prunus_persica	Prupe.7G241100_v2.0.a1
pyrus_communis	pycom02g02780 pycom15g15630
rosa_chinensis	RchiOBHm_Chr2g0088711
rosa_laevigata	RLG00000015978 RLG00000034377
rosa_multiflora	Rmu_sc0006835.1_g000005 Rmu_sc0006835.1_g000006 Rmu_sc0015442.1_g000017
rosa_roxburghii	Rroxscaffold_2G00152380
rosa_rugosa	Rorug01G0486300 Rorug01G0486400
rosa_samantha	Rh2AG041600 Rh2BG040300 Rh2CG041000 Rh2DG040700 Rh5BG314200
rosa_wichuraiana	Rw2G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	146
AclWI	GGATC	2 cut(s)	428, 967
AcoI	YGGCCR	1 cut(s)	651
AcsI	RAATTY	1 cut(s)	808
AcuI	CTGAAG	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	87, 575
AflIII	ACRYGT	1 cut(s)	846
AgsI	TTSAA	9 cut(s)	23, 137, 160, 171, 476, 508, 548, 919, 966
AjnI	CCWGG	4 cut(s)	86, 424, 582, 682
AluBI	AGCT	4 cut(s)	515, 554, 629, 796
AluI	AGCT	4 cut(s)	515, 554, 629, 796
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	2 cut(s)	306, 900
AlwI	GGATC	2 cut(s)	428, 967
AlwNI	CAGNNNCTG	1 cut(s)	644
Ama87I	CYCGRG	1 cut(s)	907
AoxI	GGCC	2 cut(s)	45, 651
ApeKI	GCWGC	4 cut(s)	515, 554, 587, 638
ApoI	RAATTY	1 cut(s)	808
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	907
AvaII	GGWCC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	4 cut(s)	502, 541, 574, 650
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	666
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	4 cut(s)	88, 426, 584, 684
BcoDI	GTCTC	2 cut(s)	306, 900
BfaI	CTAG	1 cut(s)	551
BisI	GCNGC	4 cut(s)	516, 555, 588, 639
BlsI	GCNGC	4 cut(s)	517, 556, 589, 640
Bme1390I	CCNGG	4 cut(s)	88, 426, 584, 684
Bme18I	GGWCC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	907
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	190, 580
BmrFI	CCNGG	4 cut(s)	88, 426, 584, 684
BmsI	GCATC	2 cut(s)	247, 911
BpiI	GAAGAC	1 cut(s)	183
BpmI	CTGGAG	2 cut(s)	70, 882
Bsa29I	ATCGAT	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	23
BsaJI	CCNNGG	4 cut(s)	31, 87, 425, 582
BsaWI	WCCGGW	1 cut(s)	886
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 575
Bse1I	ACTGG	3 cut(s)	245, 654, 731
Bse8I	GATNNNNATC	1 cut(s)	23
BseBI	CCWGG	4 cut(s)	88, 426, 584, 684
BseCI	ATCGAT	1 cut(s)	140
BseDI	CCNNGG	4 cut(s)	31, 87, 425, 582
BseGI	GGATG	1 cut(s)	902
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	2 cut(s)	87, 575
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	3 cut(s)	245, 654, 731
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	4 cut(s)	502, 541, 574, 650
BsgI	GTGCAG	2 cut(s)	218, 573
BshFI	GGCC	2 cut(s)	47, 653
BshVI	ATCGAT	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	532
BsiHKCI	CYCGRG	1 cut(s)	907
BsiSI	CCGG	1 cut(s)	887
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	2 cut(s)	87, 575
BsmAI	GTCTC	2 cut(s)	306, 900
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	47, 653
BsoBI	CYCGRG	1 cut(s)	907
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	3 cut(s)	367, 433, 959
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	2 cut(s)	47, 653
BspCNI	CTCAG	1 cut(s)	118
BspDI	ATCGAT	1 cut(s)	140
BspLI	GGNNCC	2 cut(s)	190, 580
BspPI	GGATC	2 cut(s)	428, 967
BsrI	ACTGG	3 cut(s)	245, 654, 731
BssECI	CCNNGG	4 cut(s)	31, 87, 425, 582
BssMI	GATC	3 cut(s)	367, 433, 959
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	4 cut(s)	88, 426, 584, 684
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	126, 594, 804
BstENI	CCTNNNNNAGG	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	902
BstKTI	GATC	3 cut(s)	370, 436, 962
BstMAI	GTCTC	2 cut(s)	306, 900
BstMBI	GATC	3 cut(s)	367, 433, 959
BstMWI	GCNNNNNNNGC	2 cut(s)	635, 644
BstNI	CCWGG	4 cut(s)	88, 426, 584, 684
BstNSI	RCATGY	1 cut(s)	850
BstSCI	CCNGG	4 cut(s)	86, 424, 582, 682
BstV1I	GCAGC	4 cut(s)	502, 541, 574, 650
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	2 cut(s)	433, 959
BstYI	RGATCY	2 cut(s)	433, 959
Bsu15I	ATCGAT	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	47, 653
BsuTUI	ATCGAT	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	902
BtsIMutI	CAGTG	3 cut(s)	123, 252, 661
Cac8I	GCNNGC	1 cut(s)	513
CaiI	CAGNNNCTG	1 cut(s)	644
Cfr13I	GGNCC	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	140
CviAII	CATG	4 cut(s)	43, 542, 815, 847
DdeI	CTNAG	3 cut(s)	126, 594, 804
DpnI	GATC	3 cut(s)	369, 435, 961
DpnII	GATC	3 cut(s)	367, 433, 959
EaeI	YGGCCR	1 cut(s)	651
Eco130I	CCWWGG	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	907
EcoNI	CCTNNNNNAGG	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	808
EcoRII	CCWGG	4 cut(s)	86, 424, 582, 682
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	4 cut(s)	46, 545, 818, 850
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	4 cut(s)	42, 541, 814, 846
FauNDI	CATATG	1 cut(s)	325
Fnu4HI	GCNGC	4 cut(s)	516, 555, 588, 639
FokI	GGATG	1 cut(s)	889
Fsp4HI	GCNGC	4 cut(s)	516, 555, 588, 639
FspBI	CTAG	1 cut(s)	551
GluI	GCNGC	4 cut(s)	516, 555, 588, 639
GsuI	CTGGAG	2 cut(s)	70, 882
HaeIII	GGCC	2 cut(s)	47, 653
HapII	CCGG	1 cut(s)	887
Hin1II	CATG	4 cut(s)	46, 545, 818, 850
HincII	GTYRAC	1 cut(s)	844
HindII	GTYRAC	1 cut(s)	844
HinfI	GANTC	2 cut(s)	19, 301
HpaI	GTTAAC	1 cut(s)	844
HpaII	CCGG	1 cut(s)	887
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	844
Hpy188I	TCNGA	1 cut(s)	789
Hpy188III	TCNNGA	2 cut(s)	212, 859
Hpy8I	GTNNAC	1 cut(s)	844
Hpy99I	CGWCG	1 cut(s)	357
HpyAV	CCTTC	9 cut(s)	58, 97, 177, 592, 705, 734, 760, 944, 949
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	7 cut(s)	199, 323, 374, 499, 518, 590, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	635, 644
HpyF3I	CTNAG	3 cut(s)	126, 594, 804
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	4 cut(s)	46, 545, 818, 850
KspAI	GTTAAC	1 cut(s)	844
Kzo9I	GATC	3 cut(s)	367, 433, 959
LmnI	GCTCC	1 cut(s)	769
Lsp1109I	GCAGC	4 cut(s)	502, 541, 574, 650
LweI	GCATC	2 cut(s)	247, 911
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	3 cut(s)	369, 435, 961
MboI	GATC	3 cut(s)	367, 433, 959
MboII	GAAGA	6 cut(s)	188, 233, 421, 443, 940, 954
MflI	RGATCY	2 cut(s)	433, 959
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	5 cut(s)	95, 221, 614, 677, 808
MnlI	CCTC	9 cut(s)	66, 82, 85, 91, 94, 216, 267, 397, 916
MseI	TTAA	3 cut(s)	825, 843, 950
MspI	CCGG	1 cut(s)	887
MspR9I	CCNGG	4 cut(s)	88, 426, 584, 684
MvaI	CCWGG	4 cut(s)	88, 426, 584, 684
MwoI	GCNNNNNNNGC	2 cut(s)	635, 644
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	3 cut(s)	367, 433, 959
NlaIII	CATG	4 cut(s)	46, 545, 818, 850
NlaIV	GGNNCC	2 cut(s)	190, 580
NspI	RCATGY	1 cut(s)	850
PaeR7I	CTCGAG	1 cut(s)	907
PciI	ACATGT	1 cut(s)	846
PfeI	GAWTC	2 cut(s)	19, 301
PkrI	GCNGC	4 cut(s)	517, 556, 589, 640
PscI	ACATGT	1 cut(s)	846
Psp6I	CCWGG	4 cut(s)	86, 424, 582, 682
PspGI	CCWGG	4 cut(s)	86, 424, 582, 682
PspN4I	GGNNCC	2 cut(s)	190, 580
PspPI	GGNCC	1 cut(s)	188
PspXI	VCTCGAGB	1 cut(s)	907
PstNI	CAGNNNCTG	1 cut(s)	644
PsuI	RGATCY	2 cut(s)	433, 959
SaqAI	TTAA	3 cut(s)	825, 843, 950
SatI	GCNGC	4 cut(s)	516, 555, 588, 639
Sau3AI	GATC	3 cut(s)	367, 433, 959
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	4 cut(s)	88, 426, 584, 684
SduI	GDGCHC	1 cut(s)	532
SfaNI	GCATC	2 cut(s)	247, 911
Sfr274I	CTCGAG	1 cut(s)	907
SinI	GGWCC	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	907
SmlI	CTYRAG	1 cut(s)	907
SmoI	CTYRAG	1 cut(s)	907
Sse9I	AATT	5 cut(s)	95, 221, 614, 677, 808
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	1 cut(s)	551
StyD4I	CCNGG	4 cut(s)	86, 424, 582, 682
StyI	CCWWGG	1 cut(s)	31
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	4 cut(s)	27, 51, 140, 908
TasI	AATT	5 cut(s)	95, 221, 614, 677, 808
TfiI	GAWTC	2 cut(s)	19, 301
Tru1I	TTAA	3 cut(s)	825, 843, 950
Tru9I	TTAA	3 cut(s)	825, 843, 950
TscAI	CASTG	3 cut(s)	130, 252, 661
TseI	GCWGC	4 cut(s)	515, 554, 587, 638
TspDTI	ATGAA	2 cut(s)	471, 627
TspRI	CASTG	3 cut(s)	130, 252, 661
VpaK11BI	GGWCC	1 cut(s)	188
XagI	CCTNNNNNAGG	1 cut(s)	85
XapI	RAATTY	1 cut(s)	808
XceI	RCATGY	1 cut(s)	850
XcmI	CCANNNNNNNNNTGG	1 cut(s)	342
XhoI	CTCGAG	1 cut(s)	907
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.