Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009523

Physical Location & Seq

Genomic Coordinates Forward (+)

3282148 .. 3288064

Gene Structure 5917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG041000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTTCCTTTGTTGTCTACAGATTCCAAAGCCTAAACCTCCTACAAAATGGGAACAGTTTGCCCAGAAGAAAGGTATAAAGAACCGTAAGAAAGACAAGATTGCATATGATGAGTCCAGTGAAACTTGGAAACGTCGCTATGGATATGATCATGCAAATGATGAGGATAATGTGCCTATCATTGAGGCAAAGTTGACTGATGTGCCAGGGGAGGATCCCTTTGCTAAAAGACGAGAAGATAAAAAGAAACGTGTTGAGAAGCAAGACAAAAACAGGTTGCAGAACTTGAAGCAAGCTGCTAAAGTTGGTGCTTTGCCAAGTCATGTTCAACTAGCTGCGACAAGGTTGCCTATAACAGGAACCCAGGCCGCAACCCAAAAGGTTACTAAAGATGAACTTGGTGATGTAGCTGGAATTGCAGCAACTGCAACAGCCAGTGGTGGAAAATTTGACAAGAAGTTGCCAGGTGAAAAACCTGGTAAACATAAAGGAAAGTATCGCAAGTTTTTACCAGTTATAGGAGGAAAAGGGATACACACGCAAGAGCAGGAGCAAACCGATAAAATTCTGAACAAGCTAATCTCTAAGAACTCCCATGAGATGCTCAATGTTAACAAGGCTGTTAACATGTATAATGTGAAGAAAGATAAGAAGCGAAACAACAGACCGGAGAAGTCTTCAGGAACCCCTGGCCAGTTGAAACCAAGGAAGAACCTTCAGAAGAAGCCATTTAACAAGGGCTCTTCAAAGTCATTTGACAAGGGATCTAAAAAGCCATTTGACAAGGGATCTAAAAGGCCATTTAACAAGGGATCTTCAAACAAAGGCAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRS1

Protein Analysis

278

Amino Acids

31.23

Weight (kDa)

10.15

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRS1	PF04939	7 - 96	5.6e-30	Ribosome biogenesis regulatory protein (RRS1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37990
fragaria_vesca	FvH4_1g03500
malus_domestica	MD02G1034000.v1.1 MD15G1174800.v1.1
prunus_persica	Prupe.7G241100_v2.0.a1
pyrus_communis	pycom02g02780 pycom15g15630
rosa_chinensis	RchiOBHm_Chr2g0088711
rosa_laevigata	RLG00000015978 RLG00000034377
rosa_multiflora	Rmu_sc0006835.1_g000005 Rmu_sc0006835.1_g000006 Rmu_sc0015442.1_g000017
rosa_roxburghii	Rroxscaffold_2G00152380
rosa_rugosa	Rorug01G0486300 Rorug01G0486400
rosa_samantha	Rh2AG041600 Rh2BG040300 Rh2CG041000 Rh2DG040700 Rh5BG314200
rosa_wichuraiana	Rw2G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	16
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	5 cut(s)	209, 222, 772, 796, 820
AcoI	YGGCCR	1 cut(s)	691
AcsI	RAATTY	2 cut(s)	446, 564
AcuI	CTGAAG	2 cut(s)	663, 701
AfiI	CCNNNNNNNGG	2 cut(s)	356, 518
AflIII	ACRYGT	2 cut(s)	250, 627
AgsI	TTSAA	5 cut(s)	289, 329, 700, 747, 819
AjnI	CCWGG	5 cut(s)	205, 363, 463, 475, 688
AluBI	AGCT	4 cut(s)	296, 335, 410, 577
AluI	AGCT	4 cut(s)	296, 335, 410, 577
AlwI	GGATC	5 cut(s)	209, 222, 772, 796, 820
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	3 cut(s)	366, 691, 797
ApeKI	GCWGC	3 cut(s)	296, 335, 419
ApoI	RAATTY	2 cut(s)	446, 564
AsuHPI	GGTGA	2 cut(s)	413, 479
BalI	TGGCCA	1 cut(s)	693
BamHI	GGATCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	743
BbsI	GAAGAC	1 cut(s)	669
BbvI	GCAGC	3 cut(s)	283, 322, 431
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BciT130I	CCWGG	5 cut(s)	207, 365, 465, 477, 690
BciVI	GTATCC	1 cut(s)	525
BclI	TGATCA	1 cut(s)	148
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	17
BfuI	GTATCC	1 cut(s)	525
BisI	GCNGC	4 cut(s)	297, 336, 369, 420
BlsI	GCNGC	4 cut(s)	298, 337, 370, 421
Bme1390I	CCNGG	5 cut(s)	207, 365, 465, 477, 690
BmiI	GGNNCC	3 cut(s)	216, 361, 685
BmrFI	CCNGG	5 cut(s)	207, 365, 465, 477, 690
BmsI	GCATC	1 cut(s)	591
BpiI	GAAGAC	1 cut(s)	669
BsaJI	CCNNGG	4 cut(s)	206, 363, 688, 704
BsaWI	WCCGGW	1 cut(s)	667
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 518
Bse1I	ACTGG	4 cut(s)	117, 435, 512, 694
BseBI	CCWGG	5 cut(s)	207, 365, 465, 477, 690
BseDI	CCNNGG	4 cut(s)	206, 363, 688, 704
BseLI	CCNNNNNNNGG	2 cut(s)	356, 518
BseNI	ACTGG	4 cut(s)	117, 435, 512, 694
BseXI	GCAGC	3 cut(s)	283, 322, 431
BshFI	GGCC	3 cut(s)	368, 693, 799
BsiSI	CCGG	1 cut(s)	668
BslI	CCNNNNNNNGG	2 cut(s)	356, 518
BsnI	GGCC	3 cut(s)	368, 693, 799
Bsp1286I	GDGCHC	1 cut(s)	743
Bsp143I	GATC	5 cut(s)	148, 214, 764, 788, 812
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	3 cut(s)	368, 693, 799
BspLI	GGNNCC	3 cut(s)	216, 361, 685
BspPI	GGATC	5 cut(s)	209, 222, 772, 796, 820
BspQI	GCTCTTC	1 cut(s)	748
BsrI	ACTGG	4 cut(s)	117, 435, 512, 694
BssECI	CCNNGG	4 cut(s)	206, 363, 688, 704
BssMI	GATC	5 cut(s)	148, 214, 764, 788, 812
BssT1I	CCWWGG	1 cut(s)	704
Bst2UI	CCWGG	5 cut(s)	207, 365, 465, 477, 690
Bst4CI	ACNGT	2 cut(s)	57, 86
Bst6I	CTCTTC	1 cut(s)	748
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	585
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstKTI	GATC	5 cut(s)	151, 217, 767, 791, 815
BstMBI	GATC	5 cut(s)	148, 214, 764, 788, 812
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 425
BstNI	CCWGG	5 cut(s)	207, 365, 465, 477, 690
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	5 cut(s)	205, 363, 463, 475, 688
BstSFI	CTRYAG	1 cut(s)	17
BstV1I	GCAGC	3 cut(s)	283, 322, 431
BstV2I	GAAGAC	1 cut(s)	669
BstX2I	RGATCY	4 cut(s)	214, 764, 788, 812
BstYI	RGATCY	4 cut(s)	214, 764, 788, 812
BsuI	GTATCC	1 cut(s)	525
BsuRI	GGCC	3 cut(s)	368, 693, 799
BtsIMutI	CAGTG	2 cut(s)	124, 442
Cac8I	GCNNGC	1 cut(s)	294
CaiI	CAGNNNCTG	1 cut(s)	425
CsiI	ACCWGGT	1 cut(s)	475
CviAII	CATG	4 cut(s)	152, 323, 596, 628
DdeI	CTNAG	1 cut(s)	585
DpnI	GATC	5 cut(s)	150, 216, 766, 790, 814
DpnII	GATC	5 cut(s)	148, 214, 764, 788, 812
EaeI	YGGCCR	1 cut(s)	691
Eam1104I	CTCTTC	1 cut(s)	748
EarI	CTCTTC	1 cut(s)	748
Eco130I	CCWWGG	1 cut(s)	704
Eco24I	GRGCYC	1 cut(s)	743
Eco57I	CTGAAG	2 cut(s)	663, 701
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoRII	CCWGG	5 cut(s)	205, 363, 463, 475, 688
EcoT14I	CCWWGG	1 cut(s)	704
EcoT38I	GRGCYC	1 cut(s)	743
ErhI	CCWWGG	1 cut(s)	704
FaeI	CATG	4 cut(s)	155, 326, 599, 631
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FatI	CATG	4 cut(s)	151, 322, 595, 627
FauNDI	CATATG	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	4 cut(s)	297, 336, 369, 420
FriOI	GRGCYC	1 cut(s)	743
Fsp4HI	GCNGC	4 cut(s)	297, 336, 369, 420
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	4 cut(s)	297, 336, 369, 420
HaeIII	GGCC	3 cut(s)	368, 693, 799
HapII	CCGG	1 cut(s)	668
Hin1II	CATG	4 cut(s)	155, 326, 599, 631
HincII	GTYRAC	3 cut(s)	195, 613, 625
HindII	GTYRAC	3 cut(s)	195, 613, 625
HinfI	GANTC	2 cut(s)	22, 113
HpaI	GTTAAC	2 cut(s)	613, 625
HpaII	CCGG	1 cut(s)	668
HphI	GGTGA	2 cut(s)	413, 479
Hpy166II	GTNNAC	5 cut(s)	17, 195, 482, 613, 625
Hpy188I	TCNGA	2 cut(s)	570, 720
Hpy188III	TCNNGA	1 cut(s)	681
Hpy8I	GTNNAC	5 cut(s)	17, 195, 482, 613, 625
Hpy99I	CGWCG	1 cut(s)	138
HpyAV	CCTTC	1 cut(s)	725
HpyCH4III	ACNGT	2 cut(s)	57, 86
HpyCH4IV	ACGT	2 cut(s)	133, 250
HpyCH4V	TGCA	5 cut(s)	104, 155, 280, 419, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 425
HpyF3I	CTNAG	1 cut(s)	585
HpySE526I	ACGT	2 cut(s)	133, 250
Hsp92II	CATG	4 cut(s)	155, 326, 599, 631
Ksp22I	TGATCA	1 cut(s)	148
KspAI	GTTAAC	2 cut(s)	613, 625
Kzo9I	GATC	5 cut(s)	148, 214, 764, 788, 812
LguI	GCTCTTC	1 cut(s)	748
LmnI	GCTCC	1 cut(s)	550
Lsp1109I	GCAGC	3 cut(s)	283, 322, 431
LweI	GCATC	1 cut(s)	591
MabI	ACCWGGT	1 cut(s)	475
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	2 cut(s)	133, 250
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	5 cut(s)	150, 216, 766, 790, 814
MboI	GATC	5 cut(s)	148, 214, 764, 788, 812
MboII	GAAGA	8 cut(s)	79, 248, 652, 669, 721, 733, 735, 807
MflI	RGATCY	4 cut(s)	214, 764, 788, 812
MhlI	GDGCHC	1 cut(s)	743
MlsI	TGGCCA	1 cut(s)	693
MluCI	AATT	3 cut(s)	414, 446, 564
MluNI	TGGCCA	1 cut(s)	693
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	5 cut(s)	48, 157, 178, 205, 515
Mox20I	TGGCCA	1 cut(s)	693
MscI	TGGCCA	1 cut(s)	693
MseI	TTAA	4 cut(s)	612, 624, 732, 804
MslI	CAYNNNNRTG	1 cut(s)	156
Msp20I	TGGCCA	1 cut(s)	693
MspI	CCGG	1 cut(s)	668
MspR9I	CCNGG	5 cut(s)	207, 365, 465, 477, 690
MvaI	CCWGG	5 cut(s)	207, 365, 465, 477, 690
MwoI	GCNNNNNNNGC	2 cut(s)	416, 425
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	5 cut(s)	148, 214, 764, 788, 812
NlaIII	CATG	4 cut(s)	155, 326, 599, 631
NlaIV	GGNNCC	3 cut(s)	216, 361, 685
NspI	RCATGY	1 cut(s)	631
PciI	ACATGT	1 cut(s)	627
PciSI	GCTCTTC	1 cut(s)	748
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	4 cut(s)	298, 337, 370, 421
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
PscI	ACATGT	1 cut(s)	627
Psp6I	CCWGG	5 cut(s)	205, 363, 463, 475, 688
PspGI	CCWGG	5 cut(s)	205, 363, 463, 475, 688
PspN4I	GGNNCC	3 cut(s)	216, 361, 685
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	4 cut(s)	214, 764, 788, 812
RseI	CAYNNNNRTG	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	748
SaqAI	TTAA	4 cut(s)	612, 624, 732, 804
SatI	GCNGC	4 cut(s)	297, 336, 369, 420
Sau3AI	GATC	5 cut(s)	148, 214, 764, 788, 812
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	5 cut(s)	207, 365, 465, 477, 690
SduI	GDGCHC	1 cut(s)	743
SexAI	ACCWGGT	1 cut(s)	475
SfaNI	GCATC	1 cut(s)	591
SfcI	CTRYAG	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	156
Sse9I	AATT	3 cut(s)	414, 446, 564
SsiI	CCGC	1 cut(s)	369
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	5 cut(s)	205, 363, 463, 475, 688
StyI	CCWWGG	1 cut(s)	704
TaaI	ACNGT	2 cut(s)	57, 86
TaiI	ACGT	2 cut(s)	136, 253
TasI	AATT	3 cut(s)	414, 446, 564
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	4 cut(s)	612, 624, 732, 804
Tru9I	TTAA	4 cut(s)	612, 624, 732, 804
TscAI	CASTG	2 cut(s)	124, 442
TseI	GCWGC	3 cut(s)	296, 335, 419
TspDTI	ATGAA	1 cut(s)	408
TspRI	CASTG	2 cut(s)	124, 442
XagI	CCTNNNNNAGG	1 cut(s)	354
XapI	RAATTY	2 cut(s)	446, 564
XceI	RCATGY	1 cut(s)	631
XmiI	GTMKAC	1 cut(s)	16
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.