Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009523

Physical Location & Seq

Genomic Coordinates Forward (+)

2621316 .. 2623812

Gene Structure 2497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1034000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGAGATCCCGCAGCAGCAGCAGCAGCAGCAGCAGATTCAAGTCGATCTGGGTAATCTCATGGCCTTCGACCCTCATCACAGCTTCCCCTCTAACCCCTCCTCCAGGGAGGAATTAGTGAAGGAATGTATAGCGAAAGGGACTGAGTTGGTTCAAGCTATTGCAAATAGTCTTTTCAACTTACCTTCAACTGAAGATATAGACGGTCCAATTGTGCAATTGCCTCGTCCCGAAACGAAACTGCCAAGACAGAAGCATCTGCCAGTGCCTAAACCTCCAACGAAATGGGAAACTTTTGCCAAAACAAAAGGTATCAAGAATCGTAAAAGAGACAAGATTGCATATGATGAGCCGACTGAAACTTGGAAACGTCGCTTTGGATATGATCGTGCAAATGATGAGAATAGTGTACCTATCATTGAGGCGAAGGAGACTGATGTGCCAGGGGAAGATCCTTTTGCTAAAAGGCAAGAGGATAAAAAGAAAAGAGTTGAAAAACAAGACAAGAATAGGTTGCAGAACTTGAAGCAAGCTGCAAAAGTTGGTGCTTTACCAAGCCATGTTCAACTGGCTGCCACACGATTGCCCATAACGGGAACCCAGTCTACAATGAAGAAGTTTTCTAAAGATGAACTGGGTAATGTAGCGGGAATTGCAGCAACTGCAACAGCCAGTGGTGGTAAGTTTGACAAGAAATTGCCAGGTGAAAAACCTCCTAAACATAAAGGAAAGTTCCGCAAGTTTTTACCAGTTGTAGAAGGAAAGGGGAAACACTCGCAAGAGCAGGAACAAACAGATAAAGTACTGAACAAGCTAATCTCTAAGAATTCCCATGAGATATTTAACGTTGACAAGGCTGTTAACATGTACAACGTCAAGAAGGACAAGAAGCGAAAGAACAAGCCAGGGATGTCCTCGAGCACGTTAAAACCGAAGAAGAACATCCAAAAGAAGCCATTAAAGAAGGGATCTTCATCGAAAGGAAAGGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRS1

Protein Analysis

332

Amino Acids

37.19

Weight (kDa)

9.95

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRS1	PF04939	13 - 175	1.4e-53	Ribosome biogenesis regulatory protein (RRS1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37990
fragaria_vesca	FvH4_1g03500
malus_domestica	MD02G1034000.v1.1 MD15G1174800.v1.1
prunus_persica	Prupe.7G241100_v2.0.a1
pyrus_communis	pycom02g02780 pycom15g15630
rosa_chinensis	RchiOBHm_Chr2g0088711
rosa_laevigata	RLG00000015978 RLG00000034377
rosa_multiflora	Rmu_sc0006835.1_g000005 Rmu_sc0006835.1_g000006 Rmu_sc0015442.1_g000017
rosa_roxburghii	Rroxscaffold_2G00152380
rosa_rugosa	Rorug01G0486300 Rorug01G0486400
rosa_samantha	Rh2AG041600 Rh2BG040300 Rh2CG041000 Rh2DG040700 Rh5BG314200
rosa_wichuraiana	Rw2G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	605
AciI	CCGC	3 cut(s)	11, 647, 736
AclI	AACGTT	1 cut(s)	846
AclWI	GGATC	2 cut(s)	446, 976
AcsI	RAATTY	1 cut(s)	826
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	3 cut(s)	411, 804, 869
AfiI	CCNNNNNNNGG	2 cut(s)	105, 593
AflIII	ACRYGT	1 cut(s)	864
AgsI	TTSAA	7 cut(s)	41, 155, 178, 189, 494, 526, 566
AjnI	CCWGG	4 cut(s)	104, 442, 700, 904
AluBI	AGCT	4 cut(s)	84, 158, 533, 814
AluI	AGCT	4 cut(s)	84, 158, 533, 814
Alw21I	GWGCWC	1 cut(s)	923
Alw26I	GTCTC	2 cut(s)	324, 425
AlwI	GGATC	2 cut(s)	446, 976
AlwNI	CAGNNNCTG	1 cut(s)	662
Ama87I	CYCGRG	1 cut(s)	916
AoxI	GGCC	1 cut(s)	63
ApoI	RAATTY	1 cut(s)	826
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	716
AvaI	CYCGRG	1 cut(s)	916
AvaII	GGWCC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	923
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	4 cut(s)	106, 444, 702, 906
BcoDI	GTCTC	2 cut(s)	324, 425
BmcAI	AGTACT	1 cut(s)	804
Bme1390I	CCNGG	4 cut(s)	106, 444, 702, 906
Bme18I	GGWCC	1 cut(s)	206
BmeT110I	CYCGRG	1 cut(s)	916
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	598
BmrFI	CCNGG	4 cut(s)	106, 444, 702, 906
BmrI	ACTGGG	2 cut(s)	595, 644
BmsI	GCATC	1 cut(s)	265
BmuI	ACTGGG	2 cut(s)	595, 644
BpmI	CTGGAG	1 cut(s)	88
BsaBI	GATNNNNATC	1 cut(s)	973
BsaJI	CCNNGG	3 cut(s)	105, 443, 905
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 593
Bse1I	ACTGG	6 cut(s)	263, 573, 601, 639, 672, 749
Bse8I	GATNNNNATC	1 cut(s)	973
BseBI	CCWGG	4 cut(s)	106, 444, 702, 906
BseDI	CCNNGG	3 cut(s)	105, 443, 905
BseGI	GGATG	2 cut(s)	915, 942
BseJI	GATNNNNATC	1 cut(s)	973
BseLI	CCNNNNNNNGG	2 cut(s)	105, 593
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	6 cut(s)	263, 573, 601, 639, 672, 749
BseRI	GAGGAG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	923
BsiHKCI	CYCGRG	1 cut(s)	916
BslFI	GGGAC	2 cut(s)	154, 213
BslI	CCNNNNNNNGG	2 cut(s)	105, 593
BsmAI	GTCTC	2 cut(s)	324, 425
BsmFI	GGGAC	2 cut(s)	154, 213
BsnI	GGCC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	916
Bsp1286I	GDGCHC	1 cut(s)	923
Bsp1407I	TGTACA	1 cut(s)	867
Bsp143I	GATC	5 cut(s)	6, 46, 385, 451, 968
BspACI	CCGC	3 cut(s)	11, 647, 736
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	598
BspPI	GGATC	2 cut(s)	446, 976
BsrGI	TGTACA	1 cut(s)	867
BsrI	ACTGG	6 cut(s)	263, 573, 601, 639, 672, 749
BssECI	CCNNGG	3 cut(s)	105, 443, 905
BssMI	GATC	5 cut(s)	6, 46, 385, 451, 968
Bst2UI	CCWGG	4 cut(s)	106, 444, 702, 906
Bst4CI	ACNGT	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstAUI	TGTACA	1 cut(s)	867
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	2 cut(s)	144, 822
BstENI	CCTNNNNNAGG	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	915, 942
BstKTI	GATC	5 cut(s)	9, 49, 388, 454, 971
BstMAI	GTCTC	2 cut(s)	324, 425
BstMBI	GATC	5 cut(s)	6, 46, 385, 451, 968
BstMWI	GCNNNNNNNGC	7 cut(s)	19, 22, 25, 28, 31, 653, 662
BstNI	CCWGG	4 cut(s)	106, 444, 702, 906
BstNSI	RCATGY	1 cut(s)	868
BstSCI	CCNGG	4 cut(s)	104, 442, 700, 904
BstX2I	RGATCY	3 cut(s)	6, 451, 968
BstXI	CCANNNNNNTGG	1 cut(s)	285
BstYI	RGATCY	3 cut(s)	6, 451, 968
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	915, 942
BtsIMutI	CAGTG	2 cut(s)	270, 679
Cac8I	GCNNGC	1 cut(s)	531
CaiI	CAGNNNCTG	1 cut(s)	662
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	3 cut(s)	410, 803, 868
CviAII	CATG	4 cut(s)	61, 560, 833, 865
CviQI	GTAC	3 cut(s)	410, 803, 868
DdeI	CTNAG	2 cut(s)	144, 822
DpnI	GATC	5 cut(s)	8, 48, 387, 453, 970
DpnII	GATC	5 cut(s)	6, 46, 385, 451, 968
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	916
EcoNI	CCTNNNNNAGG	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	826
EcoRII	CCWGG	4 cut(s)	104, 442, 700, 904
FaeI	CATG	4 cut(s)	64, 563, 836, 868
FaqI	GGGAC	2 cut(s)	154, 213
FatI	CATG	4 cut(s)	60, 559, 832, 864
FauI	CCCGC	2 cut(s)	18, 640
FauNDI	CATATG	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	605
FokI	GGATG	2 cut(s)	922, 929
GsuI	CTGGAG	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	65
Hin1II	CATG	4 cut(s)	64, 563, 836, 868
HincII	GTYRAC	2 cut(s)	850, 862
HindII	GTYRAC	2 cut(s)	850, 862
HinfI	GANTC	2 cut(s)	37, 319
HpaI	GTTAAC	1 cut(s)	862
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	4 cut(s)	410, 606, 850, 862
Hpy188III	TCNNGA	3 cut(s)	230, 316, 877
Hpy8I	GTNNAC	4 cut(s)	410, 606, 850, 862
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	7 cut(s)	76, 115, 195, 421, 752, 874, 958
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	4 cut(s)	370, 846, 873, 923
HpyCH4V	TGCA	8 cut(s)	164, 217, 341, 392, 517, 536, 656, 665
HpyF10VI	GCNNNNNNNGC	7 cut(s)	19, 22, 25, 28, 31, 653, 662
HpyF3I	CTNAG	2 cut(s)	144, 822
HpySE526I	ACGT	4 cut(s)	370, 846, 873, 923
Hsp92II	CATG	4 cut(s)	64, 563, 836, 868
KspAI	GTTAAC	1 cut(s)	862
Kzo9I	GATC	5 cut(s)	6, 46, 385, 451, 968
LweI	GCATC	1 cut(s)	265
MaeII	ACGT	4 cut(s)	370, 846, 873, 923
MalI	GATC	5 cut(s)	8, 48, 387, 453, 970
MboI	GATC	5 cut(s)	6, 46, 385, 451, 968
MboII	GAAGA	6 cut(s)	206, 461, 625, 946, 949, 963
MfeI	CAATTG	2 cut(s)	210, 218
MflI	RGATCY	3 cut(s)	6, 451, 968
MhlI	GDGCHC	1 cut(s)	923
MluCI	AATT	6 cut(s)	113, 210, 218, 651, 695, 826
MmeI	TCCRAC	1 cut(s)	302
MseI	TTAA	4 cut(s)	843, 861, 926, 959
MspR9I	CCNGG	4 cut(s)	106, 444, 702, 906
MunI	CAATTG	2 cut(s)	210, 218
MvaI	CCWGG	4 cut(s)	106, 444, 702, 906
MwoI	GCNNNNNNNGC	7 cut(s)	19, 22, 25, 28, 31, 653, 662
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	5 cut(s)	6, 46, 385, 451, 968
NlaIII	CATG	4 cut(s)	64, 563, 836, 868
NlaIV	GGNNCC	1 cut(s)	598
NspI	RCATGY	1 cut(s)	868
PaeR7I	CTCGAG	1 cut(s)	916
PciI	ACATGT	1 cut(s)	864
PcsI	WCGNNNNNNNCGW	1 cut(s)	929
PfeI	GAWTC	2 cut(s)	37, 319
PscI	ACATGT	1 cut(s)	864
Psp1406I	AACGTT	1 cut(s)	846
Psp6I	CCWGG	4 cut(s)	104, 442, 700, 904
PspGI	CCWGG	4 cut(s)	104, 442, 700, 904
PspN4I	GGNNCC	1 cut(s)	598
PspPI	GGNCC	1 cut(s)	206
PspXI	VCTCGAGB	1 cut(s)	916
PsrI	GAACNNNNNNTAC	2 cut(s)	589, 621
PstNI	CAGNNNCTG	1 cut(s)	662
PsuI	RGATCY	3 cut(s)	6, 451, 968
RsaI	GTAC	3 cut(s)	411, 804, 869
RsaNI	GTAC	3 cut(s)	410, 803, 868
SaqAI	TTAA	4 cut(s)	843, 861, 926, 959
Sau3AI	GATC	5 cut(s)	6, 46, 385, 451, 968
Sau96I	GGNCC	1 cut(s)	206
ScaI	AGTACT	1 cut(s)	804
ScrFI	CCNGG	4 cut(s)	106, 444, 702, 906
SduI	GDGCHC	1 cut(s)	923
SfaNI	GCATC	1 cut(s)	265
Sfr274I	CTCGAG	1 cut(s)	916
SinI	GGWCC	1 cut(s)	206
SlaI	CTCGAG	1 cut(s)	916
SmlI	CTYRAG	1 cut(s)	916
SmoI	CTYRAG	1 cut(s)	916
Sse9I	AATT	6 cut(s)	113, 210, 218, 651, 695, 826
SsiI	CCGC	3 cut(s)	11, 647, 736
StyD4I	CCNGG	4 cut(s)	104, 442, 700, 904
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	4 cut(s)	373, 849, 876, 926
TaqI	TCGA	4 cut(s)	45, 69, 917, 977
TasI	AATT	6 cut(s)	113, 210, 218, 651, 695, 826
TatI	WGTACW	2 cut(s)	802, 867
TfiI	GAWTC	2 cut(s)	37, 319
Tru1I	TTAA	4 cut(s)	843, 861, 926, 959
Tru9I	TTAA	4 cut(s)	843, 861, 926, 959
TscAI	CASTG	2 cut(s)	270, 679
TspDTI	ATGAA	3 cut(s)	626, 645, 963
TspRI	CASTG	2 cut(s)	270, 679
VpaK11BI	GGWCC	1 cut(s)	206
XagI	CCTNNNNNAGG	1 cut(s)	103
XapI	RAATTY	1 cut(s)	826
XceI	RCATGY	1 cut(s)	868
XhoI	CTCGAG	1 cut(s)	916
XmiI	GTMKAC	1 cut(s)	605
ZrmI	AGTACT	1 cut(s)	804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.