Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009523

Physical Location & Seq

Genomic Coordinates Forward (+)

41711362 .. 41711783

Gene Structure 422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034377

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTATAATGTGAAGAAAGATAAGAAGGGAAACAACCGACCGGAGAAGTCTTCAGGAACCCCTAGCCGGTTGAAACCAAGGATAGACCTTGGGAAGAAGCCATTTAACAAAGGCTCTTCAAAGCCATTTGACAAGGGATCCAAAAAGCCATTTAACAAGCAGGGATCGATCTTCGAACAAATGCAGAAAATGAAATTCTTAGCCATGACGGAGAAGGCATTTCTACTCTCCACTCTTGCTATCTCTATGTGTCTCAAGTGGCAACGGGAATGGGATTTGGTGTTCCACCAAATCCTCAGAATCTTAGGACGGACAGCACCACAAAACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRS1

Protein Analysis

111

Amino Acids

12.76

Weight (kDa)

10.36

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37990
fragaria_vesca	FvH4_1g03500
malus_domestica	MD02G1034000.v1.1 MD15G1174800.v1.1
prunus_persica	Prupe.7G241100_v2.0.a1
pyrus_communis	pycom02g02780 pycom15g15630
rosa_chinensis	RchiOBHm_Chr2g0088711
rosa_laevigata	RLG00000015978 RLG00000034377
rosa_multiflora	Rmu_sc0006835.1_g000005 Rmu_sc0006835.1_g000006 Rmu_sc0015442.1_g000017
rosa_roxburghii	Rroxscaffold_2G00152380
rosa_rugosa	Rorug01G0486300 Rorug01G0486400
rosa_samantha	Rh2AG041600 Rh2BG040300 Rh2CG041000 Rh2DG040700 Rh5BG314200
rosa_wichuraiana	Rw2G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	132, 145, 172
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	73, 120
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	3 cut(s)	132, 145, 172
ApoI	RAATTY	1 cut(s)	194
AsuII	TTCGAA	1 cut(s)	174
BamHI	GGATCC	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	58, 139
BpiI	GAAGAC	1 cut(s)	42
Bpu14I	TTCGAA	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	239
Bsa29I	ATCGAT	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	77, 88
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	66
BseCI	ATCGAT	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	77, 88
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	310
Bsh1285I	CGRYCG	1 cut(s)	41
BshVI	ATCGAT	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	41, 67
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	257
Bsp119I	TTCGAA	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	137, 164, 168
BspCNI	CTCAG	1 cut(s)	309
BspDI	ATCGAT	1 cut(s)	167
BspLI	GGNNCC	2 cut(s)	58, 139
BspPI	GGATC	3 cut(s)	132, 145, 172
BspQI	GCTCTTC	1 cut(s)	121
BspT104I	TTCGAA	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	2 cut(s)	77, 88
BssMI	GATC	3 cut(s)	137, 164, 168
BssT1I	CCWWGG	2 cut(s)	77, 88
Bst6I	CTCTTC	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	174
BstDEI	CTNAG	3 cut(s)	199, 296, 304
BstKTI	GATC	3 cut(s)	140, 167, 171
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	3 cut(s)	137, 164, 168
BstMCI	CGRYCG	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
Bsu15I	ATCGAT	1 cut(s)	167
BsuTUI	ATCGAT	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	66
ClaI	ATCGAT	1 cut(s)	167
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	6 cut(s)	66, 100, 114, 124, 148, 203
CviKI_1	RGCY	6 cut(s)	66, 100, 114, 124, 148, 203
DdeI	CTNAG	3 cut(s)	199, 296, 304
DpnI	GATC	3 cut(s)	139, 166, 170
DpnII	GATC	3 cut(s)	137, 164, 168
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco130I	CCWWGG	2 cut(s)	77, 88
Eco57I	CTGAAG	1 cut(s)	36
EcoT14I	CCWWGG	2 cut(s)	77, 88
ErhI	CCWWGG	2 cut(s)	77, 88
FaeI	CATG	1 cut(s)	208
FaiI	YATR	3 cut(s)	6, 206, 248
FatI	CATG	1 cut(s)	204
FspBI	CTAG	1 cut(s)	63
HapII	CCGG	2 cut(s)	41, 67
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	1 cut(s)	300
HpaII	CCGG	2 cut(s)	41, 67
Hpy188I	TCNGA	1 cut(s)	299
Hpy188III	TCNNGA	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	19, 208
HpyCH4V	TGCA	1 cut(s)	184
HpyF3I	CTNAG	3 cut(s)	199, 296, 304
Hsp92II	CATG	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	137, 164, 168
LguI	GCTCTTC	1 cut(s)	121
LpnPI	CCDG	4 cut(s)	39, 54, 80, 146
MaeI	CTAG	1 cut(s)	63
MalI	GATC	3 cut(s)	139, 166, 170
MboI	GATC	3 cut(s)	137, 164, 168
MboII	GAAGA	5 cut(s)	25, 42, 106, 108, 163
MflI	RGATCY	1 cut(s)	137
MluCI	AATT	1 cut(s)	194
MnlI	CCTC	1 cut(s)	305
MseI	TTAA	2 cut(s)	105, 153
MspI	CCGG	2 cut(s)	41, 67
NdeII	GATC	3 cut(s)	137, 164, 168
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	2 cut(s)	58, 139
NspV	TTCGAA	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	58, 139
PsuI	RGATCY	1 cut(s)	137
SapI	GCTCTTC	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	105, 153
Sau3AI	GATC	3 cut(s)	137, 164, 168
SetI	ASST	1 cut(s)	90
SfuI	TTCGAA	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	194
SspMI	CTAG	1 cut(s)	63
StyI	CCWWGG	2 cut(s)	77, 88
TaqI	TCGA	2 cut(s)	167, 174
TasI	AATT	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	300
Tru1I	TTAA	2 cut(s)	105, 153
Tru9I	TTAA	2 cut(s)	105, 153
TspDTI	ATGAA	1 cut(s)	206
TspGWI	ACGGA	2 cut(s)	224, 325
XapI	RAATTY	1 cut(s)	194
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.