Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009523

Physical Location & Seq

Genomic Coordinates Forward (+)

41627885 .. 41636116

Gene Structure 8232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG314200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCTTGGAGCCGGCCGGAGCCGCCGTCACAAAGCCCGCCGCCACCATCAAATTAAGGAAGAGAAAAGGGTAAGGAGACCCACCAAAGAGAGGTGGCGAGAAGAGATTTTTCAATTAACTCCAAGATTGAAATACTTAAGTGCCTACAGTTTAAAAGTTAAAACTGCCGTTAACATGTATAATGTGAAGAAAGATAAGAAGCGAAACAACAGATCGGAGAAGTCTTCAGGAACCCCGAGCCAGTATCCAACCCTCAGAGCCATTTCAAAGCCACAAGGGATCCAAAAAGCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRS1

Protein Analysis

98

Amino Acids

11.63

Weight (kDa)

11.38

Isoelectric Point (pI)

74.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37990
fragaria_vesca	FvH4_1g03500
malus_domestica	MD02G1034000.v1.1 MD15G1174800.v1.1
prunus_persica	Prupe.7G241100_v2.0.a1
pyrus_communis	pycom02g02780 pycom15g15630
rosa_chinensis	RchiOBHm_Chr2g0088711
rosa_laevigata	RLG00000015978 RLG00000034377
rosa_multiflora	Rmu_sc0006835.1_g000005 Rmu_sc0006835.1_g000006 Rmu_sc0015442.1_g000017
rosa_roxburghii	Rroxscaffold_2G00152380
rosa_rugosa	Rorug01G0486300 Rorug01G0486400
rosa_samantha	Rh2AG041600 Rh2BG040300 Rh2CG041000 Rh2DG040700 Rh5BG314200
rosa_wichuraiana	Rw2G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	22, 37, 40
AclWI	GGATC	2 cut(s)	274, 287
AcoI	YGGCCR	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	90
AflII	CTTAAG	1 cut(s)	136
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	3 cut(s)	113, 130, 267
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	2 cut(s)	274, 287
Ama87I	CYCGRG	1 cut(s)	235
AoxI	GGCC	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	235
BamHI	GGATCC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	216
BccI	CCATC	1 cut(s)	54
BceAI	ACGGC	2 cut(s)	9, 152
BciVI	GTATCC	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	70
BfmI	CTRYAG	1 cut(s)	145
BfrI	CTTAAG	1 cut(s)	136
BfuI	GTATCC	1 cut(s)	255
BisI	GCNGC	2 cut(s)	22, 40
BlsI	GCNGC	2 cut(s)	23, 41
BmeT110I	CYCGRG	1 cut(s)	235
BmiI	GGNNCC	4 cut(s)	10, 20, 232, 281
BpiI	GAAGAC	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	241
BseX3I	CGGCCG	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	12, 16
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	15
Bso31I	GGTCTC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	212, 279
BspACI	CCGC	3 cut(s)	22, 37, 40
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	267
BspLI	GGNNCC	4 cut(s)	10, 20, 232, 281
BspPI	GGATC	2 cut(s)	274, 287
BspTI	CTTAAG	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	11
BssMI	GATC	2 cut(s)	212, 279
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	2 cut(s)	54, 96
BstAFI	CTTAAG	1 cut(s)	136
BstC8I	GCNNGC	2 cut(s)	13, 37
BstDEI	CTNAG	1 cut(s)	254
BstKTI	GATC	2 cut(s)	215, 282
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	2 cut(s)	212, 279
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNSI	RCATGY	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
BstZI	CGGCCG	1 cut(s)	13
BsuI	GTATCC	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	15
Cac8I	GCNNGC	2 cut(s)	13, 37
Cfr10I	RCCGGY	1 cut(s)	11
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	8 cut(s)	11, 15, 21, 35, 240, 260, 271, 290
CviKI_1	RGCY	8 cut(s)	11, 15, 21, 35, 240, 260, 271, 290
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	2 cut(s)	214, 281
DpnII	GATC	2 cut(s)	212, 279
DraI	TTTAAA	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	13
EagI	CGGCCG	1 cut(s)	13
Eam1104I	CTCTTC	2 cut(s)	54, 96
EarI	CTCTTC	2 cut(s)	54, 96
EclXI	CGGCCG	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	70
Eco52I	CGGCCG	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	235
FaeI	CATG	1 cut(s)	178
FaiI	YATR	2 cut(s)	176, 180
FatI	CATG	1 cut(s)	174
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	22, 40
Fsp4HI	GCNGC	2 cut(s)	22, 40
GluI	GCNGC	2 cut(s)	22, 40
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	2 cut(s)	12, 16
Hin1II	CATG	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HpaI	GTTAAC	1 cut(s)	172
HpaII	CCGG	2 cut(s)	12, 16
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	217, 257
Hpy188III	TCNNGA	1 cut(s)	228
Hpy8I	GTNNAC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	178
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
KspAI	GTTAAC	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	212, 279
LmnI	GCTCC	2 cut(s)	8, 18
LpnPI	CCDG	4 cut(s)	25, 29, 213, 254
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	2 cut(s)	214, 281
MboI	GATC	2 cut(s)	212, 279
MboII	GAAGA	4 cut(s)	71, 113, 199, 216
MflI	RGATCY	1 cut(s)	279
MluCI	AATT	2 cut(s)	51, 113
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	2 cut(s)	84, 263
MroNI	GCCGGC	1 cut(s)	11
MseI	TTAA	7 cut(s)	54, 116, 137, 152, 159, 171, 295
MspCI	CTTAAG	1 cut(s)	136
MspI	CCGG	2 cut(s)	12, 16
MwoI	GCNNNNNNNGC	1 cut(s)	21
NaeI	GCCGGC	1 cut(s)	13
NdeII	GATC	2 cut(s)	212, 279
NgoMIV	GCCGGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	4 cut(s)	10, 20, 232, 281
NmuCI	GTSAC	1 cut(s)	26
NspI	RCATGY	1 cut(s)	178
PciI	ACATGT	1 cut(s)	174
PdiI	GCCGGC	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	23, 41
PscI	ACATGT	1 cut(s)	174
PspN4I	GGNNCC	4 cut(s)	10, 20, 232, 281
PsuI	RGATCY	1 cut(s)	279
SaqAI	TTAA	7 cut(s)	54, 116, 137, 152, 159, 171, 295
SatI	GCNGC	2 cut(s)	22, 40
Sau3AI	GATC	2 cut(s)	212, 279
SetI	ASST	1 cut(s)	95
SfcI	CTRYAG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
Sse9I	AATT	2 cut(s)	51, 113
SsiI	CCGC	3 cut(s)	22, 37, 40
TaaI	ACNGT	1 cut(s)	149
TasI	AATT	2 cut(s)	51, 113
TauI	GCSGC	2 cut(s)	24, 42
Tru1I	TTAA	7 cut(s)	54, 116, 137, 152, 159, 171, 295
Tru9I	TTAA	7 cut(s)	54, 116, 137, 152, 159, 171, 295
TseFI	GTSAC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	26
Vha464I	CTTAAG	1 cut(s)	136
XceI	RCATGY	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.