Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009523

Physical Location & Seq

Genomic Coordinates Reverse (-)

3071031 .. 3073789

Gene Structure 2759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G003280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAGACCGATACGACGGCGTTTCAAATCGACCTGGGTAATCTCATGGCTGTGGACCTTCATCATCAATTTCCCTCCAACCCTTCTTCCAGGGAGGAATTGGTGAAGGAATATATTGCAAGAGGAACTGAGTTAGTTCAAGCTATTGCGAATAATCTTTTTAATTTGCCTTCGACTGAAGACATTGAGGGTACCCTCGTGAAGTTGCCTGCTCCAACAACTAGATTGCCCAGAGAGAAGCATATTCCAAAGCCTAAACCTCCTACAAAATGGGAACAGTTTGCCCAGAAGAAAGGTATAAAGAACCGTAAGAAAGACAAGATTGCATATGATGAGTCCAGTGAAACTTGGAAACGTCGCTATGGATATGATCATGCAAATGATGAGGATAATGTGCCTATCATTGAGGCAAAGTTGACTGATGTGCCAGGGGAGGATCCCTTTGCTAAAAGACGAGAAGATAAAAAGAAACGTGTTGAGAAGCAAGACAAAAACAGGTTGCAGAACTTGAAGCAAGCTGCTAAAGTTGGTGCTTTGCCAAGCTGCGACAAGGTTGCCTATAACAGGAACCCAGGCCGCACCCAAAAGGTTACTAAAGATGAACTTGGTGATGTAGCTGGAATTGCAGCAACTGCAACAGCCAGTGGTGGAAAATTTGACAAGAAGTTGCCAGGTGAAAAACCTGGTAAACATAAAGGAAAGTATCGCAAGTTTTTACCAGTTATAGGAGGAAAAGGGATACACACGCAAGAGCAGGAGCAAACCGATAAAATTCTGAACAAGCTAATCTCTAAGAACTCCCATGAGATGCTCAATGTTAACAAGGCTGTTAACATGTATAATGTGAAGAAAGATAAGAAGCGAAACAACAGACCGGAGAAGTCTTCAGGAACCCCTGGCCAGTTGAAACCAAGGAAGAACCTTCAGAAGAAGCCATTTAACAAGGGCTCTTCAAAGTCATTTGACAAGGGATCTAAAAAGCCATTTGACAAGGGATCTAAAAGGCCATTTAACAAGGGATCTTCGAACAAAGGCAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRS1

Protein Analysis

347

Amino Acids

39.09

Weight (kDa)

9.97

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRS1	PF04939	8 - 170	8.9e-54	Ribosome biogenesis regulatory protein (RRS1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37990
fragaria_vesca	FvH4_1g03500
malus_domestica	MD02G1034000.v1.1 MD15G1174800.v1.1
prunus_persica	Prupe.7G241100_v2.0.a1
pyrus_communis	pycom02g02780 pycom15g15630
rosa_chinensis	RchiOBHm_Chr2g0088711
rosa_laevigata	RLG00000015978 RLG00000034377
rosa_multiflora	Rmu_sc0006835.1_g000005 Rmu_sc0006835.1_g000006 Rmu_sc0015442.1_g000017
rosa_roxburghii	Rroxscaffold_2G00152380
rosa_rugosa	Rorug01G0486300 Rorug01G0486400
rosa_samantha	Rh2AG041600 Rh2BG040300 Rh2CG041000 Rh2DG040700 Rh5BG314200
rosa_wichuraiana	Rw2G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	191
AciI	CCGC	1 cut(s)	577
AclWI	GGATC	5 cut(s)	431, 444, 979, 1003, 1027
AcoI	YGGCCR	1 cut(s)	898
AcsI	RAATTY	2 cut(s)	653, 771
AcuI	CTGAAG	3 cut(s)	198, 870, 908
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	2 cut(s)	564, 725
AflIII	ACRYGT	2 cut(s)	472, 834
AgsI	TTSAA	5 cut(s)	26, 140, 511, 907, 954
AjnI	CCWGG	7 cut(s)	33, 89, 427, 571, 670, 682, 895
AluBI	AGCT	5 cut(s)	143, 518, 543, 617, 784
AluI	AGCT	5 cut(s)	143, 518, 543, 617, 784
AlwI	GGATC	5 cut(s)	431, 444, 979, 1003, 1027
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	3 cut(s)	574, 898, 1004
ApeKI	GCWGC	3 cut(s)	518, 543, 626
ApoI	RAATTY	2 cut(s)	653, 771
Asp718I	GGTACC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	3 cut(s)	115, 620, 686
AsuII	TTCGAA	1 cut(s)	1025
AvaII	GGWCC	1 cut(s)	55
BaeI	ACNNNNGTAYC	2 cut(s)	183, 216
BalI	TGGCCA	1 cut(s)	900
BamHI	GGATCC	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	950
BauI	CACGAG	1 cut(s)	197
BbsI	GAAGAC	2 cut(s)	186, 876
BbvI	GCAGC	3 cut(s)	505, 530, 638
BceAI	ACGGC	1 cut(s)	33
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	7 cut(s)	35, 91, 429, 573, 672, 684, 897
BciVI	GTATCC	1 cut(s)	732
BclI	TGATCA	1 cut(s)	370
BfaI	CTAG	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	732
BisI	GCNGC	4 cut(s)	519, 544, 577, 627
BlsI	GCNGC	4 cut(s)	520, 545, 578, 628
Bme1390I	CCNGG	7 cut(s)	35, 91, 429, 573, 672, 684, 897
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	4 cut(s)	193, 438, 569, 892
BmrFI	CCNGG	7 cut(s)	35, 91, 429, 573, 672, 684, 897
BmsI	GCATC	1 cut(s)	798
BpiI	GAAGAC	2 cut(s)	186, 876
Bpu14I	TTCGAA	1 cut(s)	1025
BsaJI	CCNNGG	6 cut(s)	34, 90, 428, 571, 895, 911
BsaWI	WCCGGW	1 cut(s)	874
Bsc4I	CCNNNNNNNGG	2 cut(s)	564, 725
Bse1I	ACTGG	4 cut(s)	339, 642, 719, 901
BseBI	CCWGG	7 cut(s)	35, 91, 429, 573, 672, 684, 897
BseDI	CCNNGG	6 cut(s)	34, 90, 428, 571, 895, 911
BseLI	CCNNNNNNNGG	2 cut(s)	564, 725
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	4 cut(s)	339, 642, 719, 901
BseXI	GCAGC	3 cut(s)	505, 530, 638
BshFI	GGCC	3 cut(s)	576, 900, 1006
BshNI	GGYRCC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	875
BslI	CCNNNNNNNGG	2 cut(s)	564, 725
BsnI	GGCC	3 cut(s)	576, 900, 1006
Bsp119I	TTCGAA	1 cut(s)	1025
Bsp1286I	GDGCHC	1 cut(s)	950
Bsp143I	GATC	5 cut(s)	370, 436, 971, 995, 1019
BspACI	CCGC	1 cut(s)	577
BspANI	GGCC	3 cut(s)	576, 900, 1006
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	4 cut(s)	193, 438, 569, 892
BspPI	GGATC	5 cut(s)	431, 444, 979, 1003, 1027
BspQI	GCTCTTC	1 cut(s)	955
BspT104I	TTCGAA	1 cut(s)	1025
BspT107I	GGYRCC	1 cut(s)	191
BsrI	ACTGG	4 cut(s)	339, 642, 719, 901
BssECI	CCNNGG	6 cut(s)	34, 90, 428, 571, 895, 911
BssMI	GATC	5 cut(s)	370, 436, 971, 995, 1019
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	911
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	7 cut(s)	35, 91, 429, 573, 672, 684, 897
Bst4CI	ACNGT	2 cut(s)	279, 308
Bst6I	CTCTTC	1 cut(s)	955
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstBI	TTCGAA	1 cut(s)	1025
BstC8I	GCNNGC	2 cut(s)	210, 516
BstDEI	CTNAG	2 cut(s)	129, 792
BstENI	CCTNNNNNAGG	1 cut(s)	562
BstKTI	GATC	5 cut(s)	373, 439, 974, 998, 1022
BstMBI	GATC	5 cut(s)	370, 436, 971, 995, 1019
BstMWI	GCNNNNNNNGC	2 cut(s)	623, 632
BstNI	CCWGG	7 cut(s)	35, 91, 429, 573, 672, 684, 897
BstNSI	RCATGY	1 cut(s)	838
BstSCI	CCNGG	7 cut(s)	33, 89, 427, 571, 670, 682, 895
BstV1I	GCAGC	3 cut(s)	505, 530, 638
BstV2I	GAAGAC	2 cut(s)	186, 876
BstX2I	RGATCY	4 cut(s)	436, 971, 995, 1019
BstYI	RGATCY	4 cut(s)	436, 971, 995, 1019
BsuI	GTATCC	1 cut(s)	732
BsuRI	GGCC	3 cut(s)	576, 900, 1006
BtsIMutI	CAGTG	2 cut(s)	346, 649
Cac8I	GCNNGC	2 cut(s)	210, 516
CaiI	CAGNNNCTG	1 cut(s)	632
Cfr13I	GGNCC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	682
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	4 cut(s)	46, 374, 803, 835
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	2 cut(s)	129, 792
DpnI	GATC	5 cut(s)	372, 438, 973, 997, 1021
DpnII	GATC	5 cut(s)	370, 436, 971, 995, 1019
EaeI	YGGCCR	1 cut(s)	898
Eam1104I	CTCTTC	1 cut(s)	955
EarI	CTCTTC	1 cut(s)	955
Eco130I	CCWWGG	1 cut(s)	911
Eco24I	GRGCYC	1 cut(s)	950
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	3 cut(s)	198, 870, 908
EcoNI	CCTNNNNNAGG	1 cut(s)	562
EcoRII	CCWGG	7 cut(s)	33, 89, 427, 571, 670, 682, 895
EcoT14I	CCWWGG	1 cut(s)	911
EcoT38I	GRGCYC	1 cut(s)	950
ErhI	CCWWGG	1 cut(s)	911
FaeI	CATG	4 cut(s)	49, 377, 806, 838
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FatI	CATG	4 cut(s)	45, 373, 802, 834
FauNDI	CATATG	1 cut(s)	328
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	4 cut(s)	519, 544, 577, 627
FriOI	GRGCYC	1 cut(s)	950
Fsp4HI	GCNGC	4 cut(s)	519, 544, 577, 627
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	4 cut(s)	519, 544, 577, 627
HaeIII	GGCC	3 cut(s)	576, 900, 1006
HapII	CCGG	1 cut(s)	875
Hin1II	CATG	4 cut(s)	49, 377, 806, 838
HincII	GTYRAC	3 cut(s)	417, 820, 832
HindII	GTYRAC	3 cut(s)	417, 820, 832
HinfI	GANTC	1 cut(s)	335
HpaI	GTTAAC	2 cut(s)	820, 832
HpaII	CCGG	1 cut(s)	875
HphI	GGTGA	3 cut(s)	115, 620, 686
Hpy166II	GTNNAC	5 cut(s)	55, 417, 689, 820, 832
Hpy188I	TCNGA	2 cut(s)	777, 927
Hpy188III	TCNNGA	2 cut(s)	199, 888
Hpy8I	GTNNAC	5 cut(s)	55, 417, 689, 820, 832
Hpy99I	CGWCG	2 cut(s)	19, 360
HpyAV	CCTTC	5 cut(s)	68, 93, 100, 180, 932
HpyCH4III	ACNGT	2 cut(s)	279, 308
HpyCH4IV	ACGT	2 cut(s)	355, 472
HpyCH4V	TGCA	6 cut(s)	119, 326, 377, 502, 626, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	623, 632
HpyF3I	CTNAG	2 cut(s)	129, 792
HpySE526I	ACGT	2 cut(s)	355, 472
Hsp92II	CATG	4 cut(s)	49, 377, 806, 838
KpnI	GGTACC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	370
KspAI	GTTAAC	2 cut(s)	820, 832
Kzo9I	GATC	5 cut(s)	370, 436, 971, 995, 1019
LguI	GCTCTTC	1 cut(s)	955
LmnI	GCTCC	2 cut(s)	217, 757
Lsp1109I	GCAGC	3 cut(s)	505, 530, 638
LweI	GCATC	1 cut(s)	798
MabI	ACCWGGT	1 cut(s)	682
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	2 cut(s)	355, 472
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	5 cut(s)	372, 438, 973, 997, 1021
MboI	GATC	5 cut(s)	370, 436, 971, 995, 1019
MflI	RGATCY	4 cut(s)	436, 971, 995, 1019
MhlI	GDGCHC	1 cut(s)	950
MlsI	TGGCCA	1 cut(s)	900
MluCI	AATT	6 cut(s)	68, 98, 163, 621, 653, 771
MluNI	TGGCCA	1 cut(s)	900
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	2 cut(s)	102, 239
Mox20I	TGGCCA	1 cut(s)	900
MscI	TGGCCA	1 cut(s)	900
MseI	TTAA	5 cut(s)	162, 819, 831, 939, 1011
MslI	CAYNNNNRTG	2 cut(s)	50, 378
Msp20I	TGGCCA	1 cut(s)	900
MspI	CCGG	1 cut(s)	875
MspR9I	CCNGG	7 cut(s)	35, 91, 429, 573, 672, 684, 897
MvaI	CCWGG	7 cut(s)	35, 91, 429, 573, 672, 684, 897
MwoI	GCNNNNNNNGC	2 cut(s)	623, 632
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	5 cut(s)	370, 436, 971, 995, 1019
NlaIII	CATG	4 cut(s)	49, 377, 806, 838
NlaIV	GGNNCC	4 cut(s)	193, 438, 569, 892
NspI	RCATGY	1 cut(s)	838
NspV	TTCGAA	1 cut(s)	1025
PciI	ACATGT	1 cut(s)	834
PciSI	GCTCTTC	1 cut(s)	955
PkrI	GCNGC	4 cut(s)	520, 545, 578, 628
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PscI	ACATGT	1 cut(s)	834
Psp6I	CCWGG	7 cut(s)	33, 89, 427, 571, 670, 682, 895
PspGI	CCWGG	7 cut(s)	33, 89, 427, 571, 670, 682, 895
PspN4I	GGNNCC	4 cut(s)	193, 438, 569, 892
PspPI	GGNCC	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	4 cut(s)	436, 971, 995, 1019
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
RseI	CAYNNNNRTG	2 cut(s)	50, 378
SapI	GCTCTTC	1 cut(s)	955
SaqAI	TTAA	5 cut(s)	162, 819, 831, 939, 1011
SatI	GCNGC	4 cut(s)	519, 544, 577, 627
Sau3AI	GATC	5 cut(s)	370, 436, 971, 995, 1019
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	7 cut(s)	35, 91, 429, 573, 672, 684, 897
SduI	GDGCHC	1 cut(s)	950
SexAI	ACCWGGT	1 cut(s)	682
SfaNI	GCATC	1 cut(s)	798
SfuI	TTCGAA	1 cut(s)	1025
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	2 cut(s)	50, 378
Sse9I	AATT	6 cut(s)	68, 98, 163, 621, 653, 771
SsiI	CCGC	1 cut(s)	577
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	7 cut(s)	33, 89, 427, 571, 670, 682, 895
StyI	CCWWGG	1 cut(s)	911
TaaI	ACNGT	2 cut(s)	279, 308
TaiI	ACGT	2 cut(s)	358, 475
TaqI	TCGA	3 cut(s)	30, 173, 1025
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	6 cut(s)	68, 98, 163, 621, 653, 771
TauI	GCSGC	1 cut(s)	579
Tru1I	TTAA	5 cut(s)	162, 819, 831, 939, 1011
Tru9I	TTAA	5 cut(s)	162, 819, 831, 939, 1011
TscAI	CASTG	2 cut(s)	346, 649
TseI	GCWGC	3 cut(s)	518, 543, 626
TspDTI	ATGAA	2 cut(s)	50, 615
TspRI	CASTG	2 cut(s)	346, 649
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	562
XapI	RAATTY	2 cut(s)	653, 771
XceI	RCATGY	1 cut(s)	838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.