Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009523

Physical Location & Seq

Genomic Coordinates Reverse (-)

89362646 .. 89365665

Gene Structure 3020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00152380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGAGACCGATACGCCGGCGTTTCAAATCGACCTGGGTAATCTCATGGCTGTGGACCTTCATCACCAATTCCCCTCCAACCCTTCTTCCAGGGAGGAATTGGTGAAGGAATATATTACAAGAGGAACTGAGTTAGTTCAAGCTATTGCGAATAATCTTTTCAATTTGCCTTCGACTGAAGACATTGAGGGTACCCTTGTGAAGTTGCCTGCTCCAACAACTAGATTACCCAGAGAAAAGCATATTCCAAAGCCTAAACCTCCTACAAAATGGGAACAGTTTGCCCAGAAGAAAGGTATAAAGAACCGTAAGAAAGACAAGATTGCATATGATGAGTCCAGTGAAACTTGGAAACGTCGCTATGGATATGATCATGCAAATGATGAGGATAATGTACCTATCATTGAGGCAAAGTTGACTGATGTGCCAGGGGAGGATCCCTTTGCTAAAAGACGAGAAGATAAAAAGAAGCGTGTTGAGAAGCAAGACAAAAACAGGTTGCAGAACTTGAAGCAAGCTGCTAAAGTTGGTGCTTTGCCAAGTCATGTTCAACTAGCTGCGACAAGGTTGCCTATAACAGGAACCCAGGCTGCACCCCAAAAGGTTACTAAAGATGAACTTGGTGATGTAGCTGGAATTGCAGCAACTGCAACAGCCAGTGGTGGAAAATTTGACAAGAAGTTGCCAGGTGAAAAACCTGGTAAACATAAAGGAAAGTATCGCAAGTTTTTACCAGTTATAGGAGGAAAAGGGATACACACGCAAGAGCAGGAGCAAACCGATAAAATTCTGAACAAGCTAATCTCTAAGAACTCCCATGAGATGCTCAATGTTAACAAGGCTGTTAACATGTATAATGTGAAGAAAGATAAGAAGCGAAACAACAGACCGGAGAAGTCTTCAGGAACCCCTGGCCAGTTGAAACCAAGGAAAAGCCTTCAGAAGAAACCATTTAACAAGGGCTCTTCAAAGTCATTTGACAAGGGATCTAAAAAGCCATTTGACAAGGGATCTAAAAGGCCATTTAACAAGGGATCTTCGAACAAAGGCAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRS1

Protein Analysis

352

Amino Acids

39.44

Weight (kDa)

10.0

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRS1	PF04939	8 - 170	1.4e-53	Ribosome biogenesis regulatory protein (RRS1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37990
fragaria_vesca	FvH4_1g03500
malus_domestica	MD02G1034000.v1.1 MD15G1174800.v1.1
prunus_persica	Prupe.7G241100_v2.0.a1
pyrus_communis	pycom02g02780 pycom15g15630
rosa_chinensis	RchiOBHm_Chr2g0088711
rosa_laevigata	RLG00000015978 RLG00000034377
rosa_multiflora	Rmu_sc0006835.1_g000005 Rmu_sc0006835.1_g000006 Rmu_sc0015442.1_g000017
rosa_roxburghii	Rroxscaffold_2G00152380
rosa_rugosa	Rorug01G0486300 Rorug01G0486400
rosa_samantha	Rh2AG041600 Rh2BG040300 Rh2CG041000 Rh2DG040700 Rh5BG314200
rosa_wichuraiana	Rw2G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	191
AclWI	GGATC	5 cut(s)	431, 444, 994, 1018, 1042
AcoI	YGGCCR	1 cut(s)	913
AcsI	RAATTY	2 cut(s)	668, 786
AcuI	CTGAAG	3 cut(s)	198, 885, 923
AfaI	GTAC	2 cut(s)	193, 396
AfiI	CCNNNNNNNGG	2 cut(s)	578, 740
AflIII	ACRYGT	1 cut(s)	849
AgsI	TTSAA	7 cut(s)	26, 140, 163, 511, 551, 922, 969
AjnI	CCWGG	7 cut(s)	33, 89, 427, 585, 685, 697, 910
AluBI	AGCT	5 cut(s)	143, 518, 557, 632, 799
AluI	AGCT	5 cut(s)	143, 518, 557, 632, 799
AlwI	GGATC	5 cut(s)	431, 444, 994, 1018, 1042
AlwNI	CAGNNNCTG	1 cut(s)	647
AoxI	GGCC	2 cut(s)	913, 1019
ApeKI	GCWGC	4 cut(s)	518, 557, 590, 641
ApoI	RAATTY	2 cut(s)	668, 786
Asp718I	GGTACC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	4 cut(s)	56, 115, 635, 701
AsuII	TTCGAA	1 cut(s)	1040
AvaII	GGWCC	1 cut(s)	55
BaeI	ACNNNNGTAYC	2 cut(s)	183, 216
BalI	TGGCCA	1 cut(s)	915
BamHI	GGATCC	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	965
BbsI	GAAGAC	2 cut(s)	186, 891
BbvI	GCAGC	4 cut(s)	505, 544, 577, 653
BcgI	CGANNNNNNTGC	2 cut(s)	550, 584
BciT130I	CCWGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
BciVI	GTATCC	1 cut(s)	747
BclI	TGATCA	1 cut(s)	370
BfaI	CTAG	2 cut(s)	222, 554
BfuI	GTATCC	1 cut(s)	747
BisI	GCNGC	4 cut(s)	519, 558, 591, 642
BlsI	GCNGC	4 cut(s)	520, 559, 592, 643
Bme1390I	CCNGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	4 cut(s)	193, 438, 583, 907
BmrFI	CCNGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
BmsI	GCATC	1 cut(s)	813
BpiI	GAAGAC	2 cut(s)	186, 891
Bpu14I	TTCGAA	1 cut(s)	1040
BsaJI	CCNNGG	6 cut(s)	34, 90, 428, 585, 910, 926
BsaWI	WCCGGW	1 cut(s)	889
Bsc4I	CCNNNNNNNGG	2 cut(s)	578, 740
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	4 cut(s)	339, 657, 734, 916
BseBI	CCWGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
BseDI	CCNNGG	6 cut(s)	34, 90, 428, 585, 910, 926
BseLI	CCNNNNNNNGG	2 cut(s)	578, 740
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	4 cut(s)	339, 657, 734, 916
BseXI	GCAGC	4 cut(s)	505, 544, 577, 653
BsgI	GTGCAG	1 cut(s)	576
BshFI	GGCC	2 cut(s)	915, 1021
BshNI	GGYRCC	1 cut(s)	191
BsiSI	CCGG	2 cut(s)	17, 890
BslI	CCNNNNNNNGG	2 cut(s)	578, 740
BsnI	GGCC	2 cut(s)	915, 1021
Bsp119I	TTCGAA	1 cut(s)	1040
Bsp1286I	GDGCHC	1 cut(s)	965
Bsp143I	GATC	5 cut(s)	370, 436, 986, 1010, 1034
BspANI	GGCC	2 cut(s)	915, 1021
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	4 cut(s)	193, 438, 583, 907
BspPI	GGATC	5 cut(s)	431, 444, 994, 1018, 1042
BspQI	GCTCTTC	1 cut(s)	970
BspT104I	TTCGAA	1 cut(s)	1040
BspT107I	GGYRCC	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	4 cut(s)	339, 657, 734, 916
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	6 cut(s)	34, 90, 428, 585, 910, 926
BssMI	GATC	5 cut(s)	370, 436, 986, 1010, 1034
BssT1I	CCWWGG	1 cut(s)	926
Bst2UI	CCWGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
Bst4CI	ACNGT	2 cut(s)	279, 308
Bst6I	CTCTTC	1 cut(s)	970
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstBI	TTCGAA	1 cut(s)	1040
BstC8I	GCNNGC	3 cut(s)	18, 210, 516
BstDEI	CTNAG	2 cut(s)	129, 807
BstENI	CCTNNNNNAGG	1 cut(s)	576
BstKTI	GATC	5 cut(s)	373, 439, 989, 1013, 1037
BstMBI	GATC	5 cut(s)	370, 436, 986, 1010, 1034
BstMWI	GCNNNNNNNGC	2 cut(s)	638, 647
BstNI	CCWGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
BstNSI	RCATGY	1 cut(s)	853
BstSCI	CCNGG	7 cut(s)	33, 89, 427, 585, 685, 697, 910
BstV1I	GCAGC	4 cut(s)	505, 544, 577, 653
BstV2I	GAAGAC	2 cut(s)	186, 891
BstX2I	RGATCY	4 cut(s)	436, 986, 1010, 1034
BstYI	RGATCY	4 cut(s)	436, 986, 1010, 1034
BsuI	GTATCC	1 cut(s)	747
BsuRI	GGCC	2 cut(s)	915, 1021
BtsIMutI	CAGTG	2 cut(s)	346, 664
Cac8I	GCNNGC	3 cut(s)	18, 210, 516
CaiI	CAGNNNCTG	1 cut(s)	647
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	697
Csp6I	GTAC	2 cut(s)	192, 395
CviAII	CATG	5 cut(s)	46, 374, 545, 818, 850
CviQI	GTAC	2 cut(s)	192, 395
DdeI	CTNAG	2 cut(s)	129, 807
DpnI	GATC	5 cut(s)	372, 438, 988, 1012, 1036
DpnII	GATC	5 cut(s)	370, 436, 986, 1010, 1034
EaeI	YGGCCR	1 cut(s)	913
Eam1104I	CTCTTC	1 cut(s)	970
EarI	CTCTTC	1 cut(s)	970
Eco130I	CCWWGG	1 cut(s)	926
Eco24I	GRGCYC	1 cut(s)	965
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	3 cut(s)	198, 885, 923
EcoNI	CCTNNNNNAGG	1 cut(s)	576
EcoRII	CCWGG	7 cut(s)	33, 89, 427, 585, 685, 697, 910
EcoT14I	CCWWGG	1 cut(s)	926
EcoT38I	GRGCYC	1 cut(s)	965
ErhI	CCWWGG	1 cut(s)	926
FaeI	CATG	5 cut(s)	49, 377, 548, 821, 853
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FatI	CATG	5 cut(s)	45, 373, 544, 817, 849
FauNDI	CATATG	1 cut(s)	328
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	4 cut(s)	519, 558, 591, 642
FriOI	GRGCYC	1 cut(s)	965
Fsp4HI	GCNGC	4 cut(s)	519, 558, 591, 642
FspBI	CTAG	2 cut(s)	222, 554
GluI	GCNGC	4 cut(s)	519, 558, 591, 642
HaeIII	GGCC	2 cut(s)	915, 1021
HapII	CCGG	2 cut(s)	17, 890
Hin1II	CATG	5 cut(s)	49, 377, 548, 821, 853
HincII	GTYRAC	3 cut(s)	417, 835, 847
HindII	GTYRAC	3 cut(s)	417, 835, 847
HinfI	GANTC	1 cut(s)	335
HpaI	GTTAAC	2 cut(s)	835, 847
HpaII	CCGG	2 cut(s)	17, 890
HphI	GGTGA	4 cut(s)	56, 115, 635, 701
Hpy166II	GTNNAC	5 cut(s)	55, 417, 704, 835, 847
Hpy188I	TCNGA	2 cut(s)	792, 942
Hpy188III	TCNNGA	1 cut(s)	903
Hpy8I	GTNNAC	5 cut(s)	55, 417, 704, 835, 847
Hpy99I	CGWCG	1 cut(s)	360
HpyAV	CCTTC	5 cut(s)	68, 93, 100, 180, 947
HpyCH4III	ACNGT	2 cut(s)	279, 308
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	6 cut(s)	326, 377, 502, 593, 641, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	638, 647
HpyF3I	CTNAG	2 cut(s)	129, 807
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	5 cut(s)	49, 377, 548, 821, 853
KpnI	GGTACC	1 cut(s)	195
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	370
KspAI	GTTAAC	2 cut(s)	835, 847
Kzo9I	GATC	5 cut(s)	370, 436, 986, 1010, 1034
LguI	GCTCTTC	1 cut(s)	970
LmnI	GCTCC	2 cut(s)	217, 772
Lsp1109I	GCAGC	4 cut(s)	505, 544, 577, 653
LweI	GCATC	1 cut(s)	813
MabI	ACCWGGT	1 cut(s)	697
MaeI	CTAG	2 cut(s)	222, 554
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	5 cut(s)	372, 438, 988, 1012, 1036
MboI	GATC	5 cut(s)	370, 436, 986, 1010, 1034
MboII	GAAGA	9 cut(s)	78, 191, 301, 470, 874, 891, 955, 957, 1029
MflI	RGATCY	4 cut(s)	436, 986, 1010, 1034
MhlI	GDGCHC	1 cut(s)	965
MlsI	TGGCCA	1 cut(s)	915
MluCI	AATT	6 cut(s)	68, 98, 163, 636, 668, 786
MluNI	TGGCCA	1 cut(s)	915
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	2 cut(s)	102, 239
MnlI	CCTC	9 cut(s)	85, 88, 116, 181, 270, 379, 400, 427, 737
Mox20I	TGGCCA	1 cut(s)	915
MreI	CGCCGGCG	1 cut(s)	16
MroNI	GCCGGC	1 cut(s)	16
MscI	TGGCCA	1 cut(s)	915
MseI	TTAA	4 cut(s)	834, 846, 954, 1026
MslI	CAYNNNNRTG	2 cut(s)	50, 378
Msp20I	TGGCCA	1 cut(s)	915
MspI	CCGG	2 cut(s)	17, 890
MspR9I	CCNGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
MvaI	CCWGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
MwoI	GCNNNNNNNGC	2 cut(s)	638, 647
NaeI	GCCGGC	1 cut(s)	18
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	5 cut(s)	370, 436, 986, 1010, 1034
NgoMIV	GCCGGC	1 cut(s)	16
NlaIII	CATG	5 cut(s)	49, 377, 548, 821, 853
NlaIV	GGNNCC	4 cut(s)	193, 438, 583, 907
NspI	RCATGY	1 cut(s)	853
NspV	TTCGAA	1 cut(s)	1040
PciI	ACATGT	1 cut(s)	849
PciSI	GCTCTTC	1 cut(s)	970
PdiI	GCCGGC	1 cut(s)	18
PkrI	GCNGC	4 cut(s)	520, 559, 592, 643
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PscI	ACATGT	1 cut(s)	849
Psp6I	CCWGG	7 cut(s)	33, 89, 427, 585, 685, 697, 910
PspGI	CCWGG	7 cut(s)	33, 89, 427, 585, 685, 697, 910
PspN4I	GGNNCC	4 cut(s)	193, 438, 583, 907
PspPI	GGNCC	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	647
PsuI	RGATCY	4 cut(s)	436, 986, 1010, 1034
RsaI	GTAC	2 cut(s)	193, 396
RsaNI	GTAC	2 cut(s)	192, 395
RseI	CAYNNNNRTG	2 cut(s)	50, 378
SapI	GCTCTTC	1 cut(s)	970
SaqAI	TTAA	4 cut(s)	834, 846, 954, 1026
SatI	GCNGC	4 cut(s)	519, 558, 591, 642
Sau3AI	GATC	5 cut(s)	370, 436, 986, 1010, 1034
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	7 cut(s)	35, 91, 429, 587, 687, 699, 912
SduI	GDGCHC	1 cut(s)	965
SexAI	ACCWGGT	1 cut(s)	697
SfaNI	GCATC	1 cut(s)	813
SfuI	TTCGAA	1 cut(s)	1040
SgrAI	CRCCGGYG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	2 cut(s)	50, 378
Sse9I	AATT	6 cut(s)	68, 98, 163, 636, 668, 786
SspMI	CTAG	2 cut(s)	222, 554
StyD4I	CCNGG	7 cut(s)	33, 89, 427, 585, 685, 697, 910
StyI	CCWWGG	1 cut(s)	926
TaaI	ACNGT	2 cut(s)	279, 308
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	3 cut(s)	30, 173, 1040
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	6 cut(s)	68, 98, 163, 636, 668, 786
Tru1I	TTAA	4 cut(s)	834, 846, 954, 1026
Tru9I	TTAA	4 cut(s)	834, 846, 954, 1026
TscAI	CASTG	2 cut(s)	346, 664
TseI	GCWGC	4 cut(s)	518, 557, 590, 641
TspDTI	ATGAA	2 cut(s)	50, 630
TspRI	CASTG	2 cut(s)	346, 664
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	576
XapI	RAATTY	2 cut(s)	668, 786
XceI	RCATGY	1 cut(s)	853
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XspI	CTAG	2 cut(s)	222, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.