AT2G38150

Glycosyltransferase sugar-binding region containing DXD motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004935
Physical Location & Seq
Reverse (-)
15981625 .. 15982917
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38150.1

Sequence Viewer

Length: 1218 bp
ATGCGAGCAAGAAAGTTATCGATCTTCGCGAACTTCACGTTTTCTGTATTATTATTGTATCTCCTCTATATAGAATCTCCAAAATCAACTCTCTATGACAATAACCTACCGTTCAAACCAAACGTGCCTCTTCCCAGACCCTATGGCCCCATGAGTAGTAGTTGTAATATCAACTCAGTTGTGGACTCGGAGCATAAAGAGAAGGAGTTAGATCCGTTGTTACCTCCTCGTAAAGCTAGCAAGAACCAGAGAATTGACTGGTTCAGAAGAAAGCTACCTGAGCTGGAGATACTGAAATCGACTACCAAGAGCAAGAGTTTCCATACAAGAGTTTTGGACTTGTACAACAAGAATTGCTCTGCTCAGTTCTTTATGATTTGGCTTTCTCCTGCAAATTCTTTTGGACCAAGAGAGATGTTAGCTATTGATACTCTCTTCACCACCAATCCTGGTGCTTGCTTGGCGATTTTGTCCAACTCCTTAGACTCCCCAAACGGATACACTATCCTTAAACCATTGTTTGATCAAGGTTTCAACCTCATTGCTGTAACTATAGATATCCCGTTTCTCGTCAAGAACACTCCTGCTGAAGCTTGGCTGAAAAGGCTAAAGAGTGGCAACATGGATCCCGGTTCTATCCCCTTGTTCATGAATCTCTCTGATCTAACAAGACTCGCAGTACTCTACAAATACGGAGGAGTCTATCTAGACACAGACATCATCTTCCTCAACGACATGACAGGACTAAGAAACGCTATTGGAGCACAGAGTAGTGATCCAGCAACCAAGAGATGGACGAGACTAAACAACGCAGTGATGGTCTTTGACATCTACCATCCGCTAATGCGAGAATTCTTGCAAGAGTATGCCACAACTTTCGACGGAAACAAATGGGGATACAACAGCCCTTACCTAGTCTCTAGAGTTATCAAGAGATTAGGAAACAAACCTGGATACAACAATCTCACAATCTTTTCTCCCGATGCTTTCTATCCAGTAAACTGGATCAAAATCCAAAAGCTTTTCAAGAAACCTGCAACCACAAGAGAAGCAAAATGGGTAGAGAAGACAGTACAGGACATGAACAAAGGGAGTTACATGATACATCTGTGGAACAAAGTCACAAGGAAGATTAAGATTGAAGAAGGAAGTGTAATGCACACTCTCGTCTCCACTCACTGCACAGTCTGCGGAAACATCACAAACTCTCACATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00601 ko00603 ko01100 map00601 map00603 map01100
Pfam Domains
Protein Families
Gb3_synth Gly_transf_sug

Protein Analysis

405

Amino Acids

46.26

Weight (kDa)

9.54

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly_transf_sug PF04488 137 - 257 2.5e-22 Glycosyltransferase sugar-binding region containing DXD motif
Gb3_synth PF04572 275 - 397 3.6e-28 Alpha 1,4-glycosyltransferase conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1042
AccB7I CCANNNNNTGG 1 cut(s) 792
AccII CGCG 1 cut(s) 29
AciI CCGC 2 cut(s) 839, 1191
AclWI GGATC 5 cut(s) 206, 620, 633, 770, 1013
AcsI RAATTY 2 cut(s) 394, 851
AcuI CTGAAG 1 cut(s) 609
AfaI GTAC 3 cut(s) 344, 681, 1074
AfiI CCNNNNNNNGG 1 cut(s) 792
AgsI TTSAA 4 cut(s) 115, 535, 1027, 1142
AjnI CCWGG 2 cut(s) 448, 949
AluBI AGCT 6 cut(s) 236, 274, 283, 422, 593, 1021
AluI AGCT 6 cut(s) 236, 274, 283, 422, 593, 1021
Alw21I GWGCWC 1 cut(s) 766
Alw26I GTCTC 3 cut(s) 793, 922, 1174
AlwI GGATC 5 cut(s) 206, 620, 633, 770, 1013
AoxI GGCC 1 cut(s) 145
ApoI RAATTY 2 cut(s) 394, 851
AspS9I GGNCC 2 cut(s) 146, 404
AsuC2I CCSGG 1 cut(s) 630
AsuHPI GGTGA 1 cut(s) 430
AsuNHI GCTAGC 1 cut(s) 236
AvaII GGWCC 1 cut(s) 404
BaeI ACNNNNGTAYC 2 cut(s) 1094, 1127
BamHI GGATCC 1 cut(s) 625
BbsI GAAGAC 1 cut(s) 1073
Bbv12I GWGCWC 1 cut(s) 766
BccI CCATC 3 cut(s) 786, 811, 843
BciT130I CCWGG 2 cut(s) 450, 951
BciVI GTATCC 3 cut(s) 491, 890, 947
BclI TGATCA 1 cut(s) 523
BcnI CCSGG 1 cut(s) 630
BcoDI GTCTC 3 cut(s) 793, 922, 1174
BfaI CTAG 4 cut(s) 237, 707, 914, 921
BfmI CTRYAG 1 cut(s) 552
BfuAI ACCTGC 1 cut(s) 1042
BfuI GTATCC 3 cut(s) 491, 890, 947
BmcAI AGTACT 1 cut(s) 681
Bme1390I CCNGG 3 cut(s) 450, 630, 951
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 2 cut(s) 146, 404
BmiI GGNNCC 2 cut(s) 148, 627
BmrFI CCNGG 3 cut(s) 450, 630, 951
BmsI GCATC 1 cut(s) 973
BmtI GCTAGC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 1073
BpmI CTGGAG 1 cut(s) 305
Bpu10I CCTNAGC 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 630
Bsa29I ATCGAT 1 cut(s) 20
BsaBI GATNNNNATC 1 cut(s) 1010
Bsc4I CCNNNNNNNGG 1 cut(s) 792
Bse1I ACTGG 3 cut(s) 263, 995, 1007
Bse3DI GCAATG 1 cut(s) 540
Bse8I GATNNNNATC 1 cut(s) 1010
BseBI CCWGG 2 cut(s) 450, 951
BseCI ATCGAT 1 cut(s) 20
BseGI GGATG 1 cut(s) 835
BseJI GATNNNNATC 1 cut(s) 1010
BseLI CCNNNNNNNGG 1 cut(s) 792
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 3 cut(s) 189, 270, 377
BseNI ACTGG 3 cut(s) 263, 995, 1007
BseRI GAGGAG 3 cut(s) 53, 216, 711
BsgI GTGCAG 1 cut(s) 1165
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 147
BshVI ATCGAT 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 766
BsiSI CCGG 1 cut(s) 630
BslI CCNNNNNNNGG 1 cut(s) 792
BsmAI GTCTC 3 cut(s) 793, 922, 1174
BsmBI CGTCTC 1 cut(s) 1174
BsnI GGCC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 766
Bsp1407I TGTACA 1 cut(s) 342
Bsp143I GATC 7 cut(s) 21, 211, 523, 625, 661, 775, 1005
Bsp68I TCGCGA 1 cut(s) 29
BspACI CCGC 2 cut(s) 839, 1191
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 3 cut(s) 188, 271, 376
BspDI ATCGAT 1 cut(s) 20
BspFNI CGCG 1 cut(s) 29
BspHI TCATGA 1 cut(s) 648
BspLI GGNNCC 2 cut(s) 148, 627
BspMI ACCTGC 1 cut(s) 1042
BspOI GCTAGC 1 cut(s) 240
BspPI GGATC 5 cut(s) 206, 620, 633, 770, 1013
BsrDI GCAATG 1 cut(s) 540
BsrGI TGTACA 1 cut(s) 342
BsrI ACTGG 3 cut(s) 263, 995, 1007
BssMI GATC 7 cut(s) 21, 211, 523, 625, 661, 775, 1005
Bst2UI CCWGG 2 cut(s) 450, 951
Bst4CI ACNGT 3 cut(s) 111, 1072, 1186
Bst6I CTCTTC 2 cut(s) 135, 440
BstAPI GCANNNNNTGC 1 cut(s) 1188
BstAUI TGTACA 1 cut(s) 342
BstC8I GCNNGC 3 cut(s) 6, 238, 457
BstDEI CTNAG 5 cut(s) 175, 279, 363, 481, 746
BstF5I GGATG 1 cut(s) 835
BstFNI CGCG 1 cut(s) 29
BstKTI GATC 7 cut(s) 24, 214, 526, 628, 664, 778, 1008
BstMAI GTCTC 3 cut(s) 793, 922, 1174
BstMBI GATC 7 cut(s) 21, 211, 523, 625, 661, 775, 1005
BstMWI GCNNNNNNNGC 5 cut(s) 280, 461, 604, 761, 1188
BstNI CCWGG 2 cut(s) 450, 951
BstSCI CCNGG 3 cut(s) 448, 628, 949
BstSFI CTRYAG 1 cut(s) 552
BstUI CGCG 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 1073
BstX2I RGATCY 2 cut(s) 211, 625
BstXI CCANNNNNNTGG 1 cut(s) 1002
BstYI RGATCY 2 cut(s) 211, 625
Bsu15I ATCGAT 1 cut(s) 20
BsuI GTATCC 3 cut(s) 491, 890, 947
BsuRI GGCC 1 cut(s) 147
BsuTUI ATCGAT 1 cut(s) 20
BtsCI GGATG 1 cut(s) 835
BtsI GCAGTG 2 cut(s) 819, 1177
BtsIMutI CAGTG 2 cut(s) 819, 1177
BtuMI TCGCGA 1 cut(s) 29
BveI ACCTGC 1 cut(s) 1042
Cac8I GCNNGC 3 cut(s) 6, 238, 457
CciI TCATGA 1 cut(s) 648
Cfr13I GGNCC 2 cut(s) 146, 404
ClaI ATCGAT 1 cut(s) 20
Csp6I GTAC 3 cut(s) 343, 680, 1073
CviAII CATG 6 cut(s) 151, 622, 649, 736, 1081, 1099
CviQI GTAC 3 cut(s) 343, 680, 1073
DdeI CTNAG 5 cut(s) 175, 279, 363, 481, 746
DpnI GATC 7 cut(s) 23, 213, 525, 627, 663, 777, 1007
DpnII GATC 7 cut(s) 21, 211, 523, 625, 661, 775, 1005
Eam1104I CTCTTC 2 cut(s) 135, 440
EarI CTCTTC 2 cut(s) 135, 440
Eco32I GATATC 1 cut(s) 559
Eco47I GGWCC 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 609
EcoRI GAATTC 1 cut(s) 851
EcoRII CCWGG 2 cut(s) 448, 949
EcoRV GATATC 1 cut(s) 559
Esp3I CGTCTC 1 cut(s) 1174
FaeI CATG 6 cut(s) 154, 625, 652, 739, 1084, 1102
FatI CATG 6 cut(s) 150, 621, 648, 735, 1080, 1098
FbaI TGATCA 1 cut(s) 523
FokI GGATG 1 cut(s) 822
FspBI CTAG 4 cut(s) 237, 707, 914, 921
GsuI CTGGAG 1 cut(s) 305
HaeIII GGCC 1 cut(s) 147
HapII CCGG 1 cut(s) 630
Hin1II CATG 6 cut(s) 154, 625, 652, 739, 1084, 1102
HindIII AAGCTT 2 cut(s) 591, 1019
HinfI GANTC 6 cut(s) 74, 185, 485, 652, 672, 699
HpaII CCGG 1 cut(s) 630
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 2 cut(s) 184, 1000
Hpy188I TCNGA 3 cut(s) 190, 266, 661
Hpy188III TCNNGA 8 cut(s) 28, 574, 649, 707, 921, 931, 980, 1027
Hpy8I GTNNAC 2 cut(s) 184, 1000
Hpy99I CGWCG 1 cut(s) 884
HpyAV CCTTC 2 cut(s) 196, 1139
HpyCH4III ACNGT 3 cut(s) 111, 1072, 1186
HpyCH4IV ACGT 2 cut(s) 38, 123
HpyCH4V TGCA 5 cut(s) 392, 859, 1037, 1159, 1182
HpyF10VI GCNNNNNNNGC 5 cut(s) 280, 461, 604, 761, 1188
HpyF3I CTNAG 5 cut(s) 175, 279, 363, 481, 746
HpySE526I ACGT 2 cut(s) 38, 123
Hsp92II CATG 6 cut(s) 154, 625, 652, 739, 1084, 1102
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 7 cut(s) 21, 211, 523, 625, 661, 775, 1005
LmnI GCTCC 2 cut(s) 190, 761
LweI GCATC 1 cut(s) 973
MaeI CTAG 4 cut(s) 237, 707, 914, 921
MaeII ACGT 2 cut(s) 38, 123
MaeIII GTNAC 4 cut(s) 219, 547, 1094, 1120
MalI GATC 7 cut(s) 23, 213, 525, 627, 663, 777, 1007
MboI GATC 7 cut(s) 21, 211, 523, 625, 661, 775, 1005
MboII GAAGA 8 cut(s) 16, 122, 279, 427, 715, 1078, 1141, 1154
MflI RGATCY 2 cut(s) 211, 625
MhlI GDGCHC 1 cut(s) 766
MluCI AATT 4 cut(s) 252, 352, 394, 851
MlyI GAGTC 4 cut(s) 179, 479, 666, 708
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 7 cut(s) 74, 138, 234, 237, 548, 689, 737
MseI TTAA 3 cut(s) 510, 1134, 1216
MspI CCGG 1 cut(s) 630
MspR9I CCNGG 3 cut(s) 450, 630, 951
MvaI CCWGG 2 cut(s) 450, 951
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 5 cut(s) 280, 461, 604, 761, 1188
NciI CCSGG 1 cut(s) 630
NdeII GATC 7 cut(s) 21, 211, 523, 625, 661, 775, 1005
NheI GCTAGC 1 cut(s) 236
NlaIII CATG 6 cut(s) 154, 625, 652, 739, 1084, 1102
NlaIV GGNNCC 2 cut(s) 148, 627
NmuCI GTSAC 1 cut(s) 1120
NruI TCGCGA 1 cut(s) 29
PagI TCATGA 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PfeI GAWTC 2 cut(s) 74, 652
PflMI CCANNNNNTGG 1 cut(s) 792
PleI GAGTC 4 cut(s) 179, 479, 666, 707
PpsI GAGTC 4 cut(s) 179, 479, 666, 707
Psp6I CCWGG 2 cut(s) 448, 949
PspGI CCWGG 2 cut(s) 448, 949
PspN4I GGNNCC 2 cut(s) 148, 627
PspPI GGNCC 2 cut(s) 146, 404
PsuI RGATCY 2 cut(s) 211, 625
RruI TCGCGA 1 cut(s) 29
RsaI GTAC 3 cut(s) 344, 681, 1074
RsaNI GTAC 3 cut(s) 343, 680, 1073
SaqAI TTAA 3 cut(s) 510, 1134, 1216
Sau3AI GATC 7 cut(s) 21, 211, 523, 625, 661, 775, 1005
Sau96I GGNCC 2 cut(s) 146, 404
ScaI AGTACT 1 cut(s) 681
SchI GAGTC 4 cut(s) 179, 479, 666, 708
ScrFI CCNGG 3 cut(s) 450, 630, 951
SduI GDGCHC 1 cut(s) 766
SfaNI GCATC 1 cut(s) 973
SfcI CTRYAG 1 cut(s) 552
SinI GGWCC 1 cut(s) 404
Sse9I AATT 4 cut(s) 252, 352, 394, 851
SsiI CCGC 2 cut(s) 839, 1191
SspMI CTAG 4 cut(s) 237, 707, 914, 921
StyD4I CCNGG 3 cut(s) 448, 628, 949
TaaI ACNGT 3 cut(s) 111, 1072, 1186
TaiI ACGT 2 cut(s) 41, 126
TaqI TCGA 3 cut(s) 20, 299, 879
TasI AATT 4 cut(s) 252, 352, 394, 851
TatI WGTACW 3 cut(s) 342, 679, 1072
TfiI GAWTC 2 cut(s) 74, 652
Tru1I TTAA 3 cut(s) 510, 1134, 1216
Tru9I TTAA 3 cut(s) 510, 1134, 1216
TscAI CASTG 2 cut(s) 819, 1184
TseFI GTSAC 1 cut(s) 1120
Tsp45I GTSAC 1 cut(s) 1120
TspDTI ATGAA 3 cut(s) 637, 665, 1097
TspGWI ACGGA 4 cut(s) 204, 510, 708, 897
TspRI CASTG 2 cut(s) 819, 1184
Van91I CCANNNNNTGG 1 cut(s) 792
VpaK11BI GGWCC 1 cut(s) 404
XapI RAATTY 2 cut(s) 394, 851
XbaI TCTAGA 2 cut(s) 706, 920
XspI CTAG 4 cut(s) 237, 707, 914, 921
ZrmI AGTACT 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.