RLG00000024781

Glycosyltransferase sugar-binding region containing DXD motif

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
39100396 .. 39101658
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024781

Sequence Viewer

Length: 1263 bp
ATGTCGCAAAAAGTGTTTGATTATAACCTATCTAGACGCACTGCCAAATCTCCTATTTTCTCCACCATCTCATTTGCTGCCATATTCTTTCTCCTCTATTCATCAGACACCATAGTCTCGATCTCTAACCTTACCATGCATCCGGTTGACCTCAAAAGTCATAAAATTGTTGACCATCGCCAGGAACCAACCTTGATTACTACTAGTAATATCCAAGAAGAGATCAGCATTGATGAAGGTCCGGATGAAGTTTACGACCCTCTGATCCCTCCCGACAATGTAACAAAAGAAGAAAGACTAGTGTGGTTCAGGCGAAAGCTTCCAGAGCTGGAGATACTCAGGTCCAACAGCTTGACGCAGCAATTCCACAGTCGAGTTCTCCAGTTCCTCAACAACGGATGCAGCATTCAATTCTACATGATATGGTTTTCACCAGCAAAGTCATTCGGAAAAAGAGAATTCTTCGCCATGGACAGCCTCTTCAAAGCTCATCCTCAAGGATGTTTGATGCTATTATCGAAAAGCATGGATTCGGGACGCGGATACCGAATCCTGAAACCATTACTTGATGGAGGATTCAAAATACTCGCGGTGACTCCAGACTTGCCGTTTCTAGTAAAAAACACTCCGGGTGAACTTTGGCTTGGCGAAATGAAGGGTGGGAGGAGAGACCCAGGTTACATCCCATTGTCCCAAAACCTAGCCAATCTGATTAGACTTGCCGTGCTTTACAAGTATGGAGGTGTATACTTGGACACAGACTTCATAACTCTGAAGGATTTCTCGGGGTTGAGGAATGCAATTGGAGCACAAAATGTAGATTTGGAGTCCAAAAACTGGACCATTCTAAACAATGCAGTCATGATCTTCGACATAAACCATCCGCTTCTACCAGACTTCATGGGAGAATTTGCTTCAACATTTAATGGAAACAAATGGGGTCACAACGGACCTTACTTGGTCTCCAGGGTAACTGAGAAAGTGGGGCGCACACCAGGTTACAACCTTACAATTTTGCCTCCCGAGGCGTTTTATCCGGTGGAATGGAATAAAATTCGAAGGATTTTCCAGAAGCCTCAGAAGGAATCGGAGTCGAGATGGGTGGAAAGCATGTTGAATGAGTTGAATGAAGGGGAGACTTATGCTCTACACCTATGGAACAAGAGAAGTAGAGAATTGGCCATTGGAGAGGGAAGTGTCATGGCTAGACTAATATCGGCGCATTGTGTTATCTGCCAGGACATAAATATTACTTCTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

421

Amino Acids

47.94

Weight (kDa)

7.69

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly_transf_sug PF04488 152 - 272 7.9e-21 Glycosyltransferase sugar-binding region containing DXD motif
Gb3_synth PF04572 290 - 413 2.8e-27 Alpha 1,4-glycosyltransferase conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 24, 1261
AasI GACNNNNNNGTC 1 cut(s) 113
AccB7I CCANNNNNTGG 1 cut(s) 837
AccI GTMKAC 1 cut(s) 747
AccII CGCG 2 cut(s) 540, 590
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 3 cut(s) 540, 590, 884
AclWI GGATC 1 cut(s) 259
AcoI YGGCCR 1 cut(s) 1179
AcsI RAATTY 3 cut(s) 458, 908, 1053
AcuI CTGAAG 1 cut(s) 794
AfiI CCNNNNNNNGG 2 cut(s) 181, 837
AgsI TTSAA 6 cut(s) 410, 484, 580, 918, 1117, 1126
AhlI ACTAGT 2 cut(s) 203, 298
AjnI CCWGG 5 cut(s) 180, 673, 965, 994, 1236
AjuI GAANNNNNNNTTGG 4 cut(s) 627, 659, 1167, 1199
AluBI AGCT 4 cut(s) 319, 328, 351, 488
AluI AGCT 4 cut(s) 319, 328, 351, 488
Alw21I GWGCWC 1 cut(s) 811
Alw26I GTCTC 4 cut(s) 121, 663, 967, 1130
AlwI GGATC 1 cut(s) 259
Ama87I CYCGRG 2 cut(s) 784, 1022
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 1 cut(s) 1179
ApeKI GCWGC 3 cut(s) 77, 358, 402
ApoI RAATTY 3 cut(s) 458, 908, 1053
Asp700I GAANNNNTTC 1 cut(s) 779
AspLEI GCGC 2 cut(s) 990, 1222
AspS9I GGNCC 4 cut(s) 239, 342, 840, 950
AsuC2I CCSGG 1 cut(s) 630
AsuHPI GGTGA 3 cut(s) 423, 604, 644
AsuII TTCGAA 1 cut(s) 1057
AvaI CYCGRG 2 cut(s) 784, 1022
AvaII GGWCC 4 cut(s) 239, 342, 840, 950
BaeI ACNNNNGTAYC 2 cut(s) 326, 359
BalI TGGCCA 1 cut(s) 1181
Bbv12I GWGCWC 1 cut(s) 811
BbvI GCAGC 3 cut(s) 64, 370, 414
BccI CCATC 5 cut(s) 74, 183, 563, 888, 1092
BceAI ACGGC 2 cut(s) 592, 707
BciT130I CCWGG 5 cut(s) 182, 675, 967, 996, 1238
BciVI GTATCC 1 cut(s) 536
BcnI CCSGG 1 cut(s) 630
BcoDI GTCTC 4 cut(s) 121, 663, 967, 1130
BcuI ACTAGT 2 cut(s) 203, 298
BfaI CTAG 6 cut(s) 33, 204, 299, 614, 701, 1206
BfuI GTATCC 1 cut(s) 536
BisI GCNGC 3 cut(s) 78, 359, 403
BlsI GCNGC 3 cut(s) 79, 360, 404
Bme1390I CCNGG 6 cut(s) 182, 630, 675, 967, 996, 1238
Bme18I GGWCC 4 cut(s) 239, 342, 840, 950
BmeT110I CYCGRG 2 cut(s) 784, 1022
BmgT120I GGNCC 4 cut(s) 239, 342, 840, 950
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 6 cut(s) 182, 630, 675, 967, 996, 1238
BmsI GCATC 3 cut(s) 148, 389, 498
BpmI CTGGAG 4 cut(s) 350, 365, 582, 949
Bpu14I TTCGAA 1 cut(s) 1057
BpuEI CTTGAG 1 cut(s) 480
BpuMI CCSGG 1 cut(s) 630
BsaI GGTCTC 2 cut(s) 663, 967
BsaJI CCNNGG 4 cut(s) 468, 673, 966, 1023
BsaWI WCCGGW 3 cut(s) 142, 241, 1036
BsaXI ACNNNNNCTCC 2 cut(s) 947, 977
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 837
Bse1I ACTGG 2 cut(s) 382, 842
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 5 cut(s) 182, 675, 967, 996, 1238
BseDI CCNNGG 4 cut(s) 468, 673, 966, 1023
BseGI GGATG 7 cut(s) 139, 250, 404, 490, 506, 681, 880
BseLI CCNNNNNNNGG 2 cut(s) 181, 837
BseMII CTCAG 3 cut(s) 352, 966, 1091
BseNI ACTGG 2 cut(s) 382, 842
BseRI GAGGAG 2 cut(s) 83, 679
BseXI GCAGC 3 cut(s) 64, 370, 414
Bsh1236I CGCG 2 cut(s) 540, 590
BshFI GGCC 1 cut(s) 1181
BsiHKAI GWGCWC 1 cut(s) 811
BsiHKCI CYCGRG 2 cut(s) 784, 1022
BsiSI CCGG 4 cut(s) 143, 242, 629, 1037
BslFI GGGAC 2 cut(s) 549, 676
BslI CCNNNNNNNGG 2 cut(s) 181, 837
BsmAI GTCTC 4 cut(s) 121, 663, 967, 1130
BsmFI GGGAC 2 cut(s) 549, 676
BsmI GAATGC 2 cut(s) 405, 802
BsnI GGCC 1 cut(s) 1181
Bso31I GGTCTC 2 cut(s) 663, 967
BsoBI CYCGRG 2 cut(s) 784, 1022
Bsp119I TTCGAA 1 cut(s) 1057
Bsp1286I GDGCHC 1 cut(s) 811
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 4 cut(s) 120, 222, 264, 864
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 3 cut(s) 540, 590, 884
BspANI GGCC 1 cut(s) 1181
BspCNI CTCAG 3 cut(s) 351, 967, 1090
BspEI TCCGGA 1 cut(s) 241
BspFNI CGCG 2 cut(s) 540, 590
BspHI TCATGA 1 cut(s) 861
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 1 cut(s) 259
BspT104I TTCGAA 1 cut(s) 1057
BspTNI GGTCTC 2 cut(s) 663, 967
BsrI ACTGG 2 cut(s) 382, 842
BssECI CCNNGG 4 cut(s) 468, 673, 966, 1023
BssMI GATC 4 cut(s) 120, 222, 264, 864
BssNAI GTATAC 1 cut(s) 748
BssT1I CCWWGG 1 cut(s) 468
Bst1107I GTATAC 1 cut(s) 748
Bst2UI CCWGG 5 cut(s) 182, 675, 967, 996, 1238
Bst4CI ACNGT 1 cut(s) 371
Bst6I CTCTTC 2 cut(s) 213, 485
BstBI TTCGAA 1 cut(s) 1057
BstDEI CTNAG 3 cut(s) 338, 975, 1077
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 7 cut(s) 139, 250, 404, 490, 506, 681, 880
BstFNI CGCG 2 cut(s) 540, 590
BstHHI GCGC 2 cut(s) 990, 1222
BstKTI GATC 4 cut(s) 123, 225, 267, 867
BstMAI GTCTC 4 cut(s) 121, 663, 967, 1130
BstMBI GATC 4 cut(s) 120, 222, 264, 864
BstMWI GCNNNNNNNGC 2 cut(s) 325, 806
BstNI CCWGG 5 cut(s) 182, 675, 967, 996, 1238
BstNSI RCATGY 1 cut(s) 1114
BstSCI CCNGG 6 cut(s) 180, 628, 673, 965, 994, 1236
BstUI CGCG 2 cut(s) 540, 590
BstV1I GCAGC 3 cut(s) 64, 370, 414
BstZ17I GTATAC 1 cut(s) 748
BsuI GTATCC 1 cut(s) 536
BsuRI GGCC 1 cut(s) 1181
BtgI CCRYGG 1 cut(s) 468
BtgZI GCGATG 1 cut(s) 161
BtsCI GGATG 7 cut(s) 139, 250, 404, 490, 506, 681, 880
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
CciI TCATGA 1 cut(s) 861
CfoI GCGC 2 cut(s) 990, 1222
Cfr13I GGNCC 4 cut(s) 239, 342, 840, 950
CseI GACGC 3 cut(s) 45, 364, 546
CsiI ACCWGGT 1 cut(s) 994
CviAII CATG 8 cut(s) 136, 418, 469, 526, 862, 901, 1111, 1201
DdeI CTNAG 3 cut(s) 338, 975, 1077
DpnI GATC 4 cut(s) 122, 224, 266, 866
DpnII GATC 4 cut(s) 120, 222, 264, 864
DrdI GACNNNNNNGTC 1 cut(s) 113
DseDI GACNNNNNNGTC 1 cut(s) 113
EaeI YGGCCR 1 cut(s) 1179
Eam1104I CTCTTC 2 cut(s) 213, 485
EarI CTCTTC 2 cut(s) 213, 485
Eco130I CCWWGG 1 cut(s) 468
Eco31I GGTCTC 2 cut(s) 663, 967
Eco47I GGWCC 4 cut(s) 239, 342, 840, 950
Eco57I CTGAAG 1 cut(s) 794
Eco88I CYCGRG 2 cut(s) 784, 1022
EcoRI GAATTC 1 cut(s) 458
EcoRII CCWGG 5 cut(s) 180, 673, 965, 994, 1236
EcoT14I CCWWGG 1 cut(s) 468
EcoT22I ATGCAT 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 8 cut(s) 139, 421, 472, 529, 865, 904, 1114, 1204
FaqI GGGAC 2 cut(s) 549, 676
FatI CATG 8 cut(s) 135, 417, 468, 525, 861, 900, 1110, 1200
FblI GTMKAC 1 cut(s) 747
Fnu4HI GCNGC 3 cut(s) 78, 359, 403
FokI GGATG 7 cut(s) 126, 257, 411, 477, 513, 668, 867
Fsp4HI GCNGC 3 cut(s) 78, 359, 403
FspBI CTAG 6 cut(s) 33, 204, 299, 614, 701, 1206
GlaI GCGC 2 cut(s) 989, 1221
GluI GCNGC 3 cut(s) 78, 359, 403
GsuI CTGGAG 4 cut(s) 350, 365, 582, 949
HaeIII GGCC 1 cut(s) 1181
HapII CCGG 4 cut(s) 143, 242, 629, 1037
HgaI GACGC 3 cut(s) 45, 364, 546
HhaI GCGC 2 cut(s) 990, 1222
Hin1II CATG 8 cut(s) 139, 421, 472, 529, 865, 904, 1114, 1204
Hin6I GCGC 2 cut(s) 988, 1220
HinP1I GCGC 2 cut(s) 988, 1220
HincII GTYRAC 2 cut(s) 148, 172
HindII GTYRAC 2 cut(s) 148, 172
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 7 cut(s) 530, 549, 576, 595, 827, 1085, 1091
HpaII CCGG 4 cut(s) 143, 242, 629, 1037
HphI GGTGA 3 cut(s) 423, 604, 644
Hpy166II GTNNAC 5 cut(s) 148, 172, 253, 635, 748
Hpy188I TCNGA 7 cut(s) 106, 264, 449, 711, 774, 1080, 1090
Hpy8I GTNNAC 5 cut(s) 148, 172, 253, 635, 748
HpyAV CCTTC 6 cut(s) 230, 649, 769, 1053, 1075, 1124
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4V TGCA 4 cut(s) 139, 402, 800, 857
HpyF10VI GCNNNNNNNGC 2 cut(s) 325, 806
HpyF3I CTNAG 3 cut(s) 338, 975, 1077
Hsp92II CATG 8 cut(s) 139, 421, 472, 529, 865, 904, 1114, 1204
HspAI GCGC 2 cut(s) 988, 1220
Kpn2I TCCGGA 1 cut(s) 241
Kzo9I GATC 4 cut(s) 120, 222, 264, 864
LmnI GCTCC 1 cut(s) 806
Lsp1109I GCAGC 3 cut(s) 64, 370, 414
LweI GCATC 3 cut(s) 148, 389, 498
MabI ACCWGGT 1 cut(s) 994
MaeI CTAG 6 cut(s) 33, 204, 299, 614, 701, 1206
MaeIII GTNAC 6 cut(s) 280, 592, 677, 941, 970, 998
MalI GATC 4 cut(s) 122, 224, 266, 866
MboI GATC 4 cut(s) 120, 222, 264, 864
MboII GAAGA 5 cut(s) 230, 302, 454, 472, 859
MfeI CAATTG 1 cut(s) 801
MhlI GDGCHC 1 cut(s) 811
MlsI TGGCCA 1 cut(s) 1181
MluCI AATT 9 cut(s) 165, 362, 410, 458, 801, 908, 1011, 1053, 1175
MluNI TGGCCA 1 cut(s) 1181
MlyI GAGTC 3 cut(s) 589, 836, 1100
MmeI TCCRAC 1 cut(s) 369
Mox20I TGGCCA 1 cut(s) 1181
Mph1103I ATGCAT 1 cut(s) 141
MroI TCCGGA 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 779
MscI TGGCCA 1 cut(s) 1181
MseI TTAA 1 cut(s) 924
Msp20I TGGCCA 1 cut(s) 1181
MspI CCGG 4 cut(s) 143, 242, 629, 1037
MspR9I CCNGG 6 cut(s) 182, 630, 675, 967, 996, 1238
MunI CAATTG 1 cut(s) 801
Mva1269I GAATGC 2 cut(s) 405, 802
MvaI CCWGG 5 cut(s) 182, 675, 967, 996, 1238
MvnI CGCG 2 cut(s) 540, 590
MwoI GCNNNNNNNGC 2 cut(s) 325, 806
NciI CCSGG 1 cut(s) 630
NcoI CCATGG 1 cut(s) 468
NdeII GATC 4 cut(s) 120, 222, 264, 864
NlaIII CATG 8 cut(s) 139, 421, 472, 529, 865, 904, 1114, 1204
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 2 cut(s) 592, 941
NsiI ATGCAT 1 cut(s) 141
NspI RCATGY 1 cut(s) 1114
NspV TTCGAA 1 cut(s) 1057
PagI TCATGA 1 cut(s) 861
PcsI WCGNNNNNNNCGW 1 cut(s) 544
PctI GAATGC 2 cut(s) 405, 802
PdmI GAANNNNTTC 1 cut(s) 779
PfeI GAWTC 4 cut(s) 530, 549, 576, 1085
PflMI CCANNNNNTGG 1 cut(s) 837
PkrI GCNGC 3 cut(s) 79, 360, 404
PleI GAGTC 3 cut(s) 589, 835, 1099
PpsI GAGTC 3 cut(s) 589, 835, 1099
PsiI TTATAA 2 cut(s) 24, 1261
Psp6I CCWGG 5 cut(s) 180, 673, 965, 994, 1236
PspGI CCWGG 5 cut(s) 180, 673, 965, 994, 1236
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 4 cut(s) 239, 342, 840, 950
SaqAI TTAA 1 cut(s) 924
SatI GCNGC 3 cut(s) 78, 359, 403
Sau3AI GATC 4 cut(s) 120, 222, 264, 864
Sau96I GGNCC 4 cut(s) 239, 342, 840, 950
SchI GAGTC 3 cut(s) 589, 836, 1100
ScrFI CCNGG 6 cut(s) 182, 630, 675, 967, 996, 1238
SduI GDGCHC 1 cut(s) 811
SexAI ACCWGGT 1 cut(s) 994
SfaNI GCATC 3 cut(s) 148, 389, 498
SfuI TTCGAA 1 cut(s) 1057
SinI GGWCC 4 cut(s) 239, 342, 840, 950
SmlI CTYRAG 1 cut(s) 495
SmoI CTYRAG 1 cut(s) 495
SpeI ACTAGT 2 cut(s) 203, 298
Sse9I AATT 9 cut(s) 165, 362, 410, 458, 801, 908, 1011, 1053, 1175
SsiI CCGC 3 cut(s) 540, 590, 884
SspI AATATT 1 cut(s) 1249
SspMI CTAG 6 cut(s) 33, 204, 299, 614, 701, 1206
StyD4I CCNGG 6 cut(s) 180, 628, 673, 965, 994, 1236
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 1 cut(s) 371
TaqI TCGA 6 cut(s) 119, 373, 518, 870, 1057, 1094
TasI AATT 9 cut(s) 165, 362, 410, 458, 801, 908, 1011, 1053, 1175
TfiI GAWTC 4 cut(s) 530, 549, 576, 1085
Tru1I TTAA 1 cut(s) 924
Tru9I TTAA 1 cut(s) 924
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 2 cut(s) 592, 941
TseI GCWGC 3 cut(s) 77, 358, 402
Tsp45I GTSAC 2 cut(s) 592, 941
TspDTI ATGAA 7 cut(s) 90, 249, 261, 668, 754, 889, 1143
TspGWI ACGGA 2 cut(s) 411, 963
TspRI CASTG 1 cut(s) 46
Van91I CCANNNNNTGG 1 cut(s) 837
VpaK11BI GGWCC 4 cut(s) 239, 342, 840, 950
XapI RAATTY 3 cut(s) 458, 908, 1053
XbaI TCTAGA 1 cut(s) 32
XceI RCATGY 1 cut(s) 1114
XmiI GTMKAC 1 cut(s) 747
XmnI GAANNNNTTC 1 cut(s) 779
XspI CTAG 6 cut(s) 33, 204, 299, 614, 701, 1206
Zsp2I ATGCAT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.