FvH4_6g11740

Glycosyltransferase sugar-binding region containing DXD motif

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
7017299 .. 7018561
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11740.t1

Sequence Viewer

Length: 1263 bp
ATGTCACAGAAAGTGTTTGATTACAACCTATTTAGACGCCCTGCCAATTCCCCAGTCTTCTCCACCCTCTCATTCGTTGCCATATTCTTTCTCCTCTATTCATCAGACACCCTAGTTTCCATCGCTAACCTTCCCATGCATGCAGTTGACCTCAAAAGTCATAAAACTGTCGACCATCTCCGCGAACCAACCTTGATCACTACTACTAATATCCAAGAGCAGATCACCATTGATGAAGGTCCGGATGAAGTTTACGACCCTCTAATCCCTCCGGACAATGTAACAAAAGAAGAGAGACTAGTCTGGTTCCGGCGAAAGCTTCCAGAGCTAGAGATACTCCGGTCTAACAACTTCACGCAGCAATTCCACAGTCGAGTTCTCCAGTTCCTCAATAATGGATGCAGCATTCAGTTCTACATGATATGGTTTTCGCCAGCAAAGTCATTCGGGAAAAGAGAATTCTTCGCCATGGACAGCCTCTTCAAAGCTAATCCTGAAGGATGCTTGATGATTTTATCAAAAAGCATGGATTCAGGACGCGGATATCGAATCTTGAAACCATTACTAGATGGAGGCTTCAAAATACTTGCGGTGACTCCAGACTTGCCCTTTCTAGTCAAGAACACTCGGGGCGAAGTTTGGCTTGAAGAAATTAAGAGTGGCAAGAAGGACCCAGGTTACATCCCATTATCTCAAAACCTAGCCAATCTGATCAGACTTACCGTGCTCTACAAGTATGGAGGTGTGTACTTAGACACCGACTTCATAACTCTGAAGGATTTCTCCGGGTTGAGGAATGCAATAGGAGCACAAAGTGTGGATTTGCGGTCCAAAAACTGGACCAGACTAAACAATGCAGCCATGATTTTCGACATAAACCATCCGATTCTACTGGACTACATAAGTGAATTTGCTGCTACTTTTAATGGAAACAAATGGGGTCACAACGGACCTTACTTGGTCTCCAGGGTGACTGAGAAAGTGGGAAGCACACCGGGTTACAACCTTACAATTGTGCCGCCTGAAGCTTTTTATCCGGTGAACTGGAATCAGATTCGGAGGCTTTTCCGAAAGCCTCAGAAGGAATCGGAGTCGAGATGGGTGGAAAGCATGTTGAATGAGTTGAATCAAGAGGAGACTTATGCTCTACACCTATGGAACAAGAGGAGTAGAGAATTGGCCATTGAAGAGGGAAGTGTCTTGGCTAGATTAATATCGGAGCATTGTGTTATTTGCCAGGACATATATAGTACTTCTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

421

Amino Acids

48.27

Weight (kDa)

7.67

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly_transf_sug PF04488 152 - 272 1.3e-20 Glycosyltransferase sugar-binding region containing DXD motif
Gb3_synth PF04572 290 - 413 3.5e-27 Alpha 1,4-glycosyltransferase conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1261
AccB7I CCANNNNNTGG 1 cut(s) 837
AccI GTMKAC 1 cut(s) 171
AccII CGCG 2 cut(s) 183, 540
AccIII TCCGGA 2 cut(s) 241, 271
AciI CCGC 5 cut(s) 181, 540, 590, 826, 1019
AcoI YGGCCR 1 cut(s) 1179
AcsI RAATTY 2 cut(s) 458, 908
AcuI CTGAAG 3 cut(s) 516, 794, 1044
AcyI GRCGYC 1 cut(s) 37
AdeI CACNNNGTG 1 cut(s) 815
AfaI GTAC 2 cut(s) 749, 1252
AfiI CCNNNNNNNGG 2 cut(s) 792, 837
AgsI TTSAA 7 cut(s) 484, 556, 580, 647, 1117, 1126, 1187
AhlI ACTAGT 1 cut(s) 298
AjnI CCWGG 3 cut(s) 673, 965, 1236
AluBI AGCT 4 cut(s) 319, 328, 488, 1028
AluI AGCT 4 cut(s) 319, 328, 488, 1028
Alw21I GWGCWC 2 cut(s) 729, 811
Alw26I GTCTC 3 cut(s) 289, 967, 1130
Ama87I CYCGRG 1 cut(s) 627
Aor13HI TCCGGA 2 cut(s) 241, 271
AoxI GGCC 1 cut(s) 1179
ApeKI GCWGC 4 cut(s) 358, 402, 857, 914
ApoI RAATTY 2 cut(s) 458, 908
AseI ATTAAT 1 cut(s) 1211
Asp700I GAANNNNTTC 1 cut(s) 779
AspS9I GGNCC 5 cut(s) 239, 670, 828, 840, 950
AsuC2I CCSGG 2 cut(s) 787, 996
AsuHPI GGTGA 4 cut(s) 217, 604, 982, 1051
AvaI CYCGRG 1 cut(s) 627
AvaII GGWCC 5 cut(s) 239, 670, 828, 840, 950
BaeI ACNNNNGTAYC 2 cut(s) 326, 359
BalI TGGCCA 1 cut(s) 1181
BbsI GAAGAC 1 cut(s) 49
Bbv12I GWGCWC 2 cut(s) 729, 811
BbvI GCAGC 4 cut(s) 370, 414, 869, 901
BccI CCATC 5 cut(s) 128, 183, 563, 888, 1092
BciT130I CCWGG 3 cut(s) 675, 967, 1238
BclI TGATCA 2 cut(s) 195, 711
BcnI CCSGG 2 cut(s) 787, 996
BcoDI GTCTC 3 cut(s) 289, 967, 1130
BcuI ACTAGT 1 cut(s) 298
BfaI CTAG 7 cut(s) 113, 299, 329, 566, 614, 701, 1206
BisI GCNGC 5 cut(s) 359, 403, 858, 915, 1019
BlsI GCNGC 5 cut(s) 360, 404, 859, 916, 1020
BmcAI AGTACT 1 cut(s) 1252
Bme1390I CCNGG 5 cut(s) 675, 787, 967, 996, 1238
Bme18I GGWCC 5 cut(s) 239, 670, 828, 840, 950
BmeT110I CYCGRG 1 cut(s) 627
BmgT120I GGNCC 5 cut(s) 239, 670, 828, 840, 950
BmiI GGNNCC 2 cut(s) 308, 672
BmrFI CCNGG 5 cut(s) 675, 787, 967, 996, 1238
BmrI ACTGGG 1 cut(s) 47
BmsI GCATC 2 cut(s) 389, 491
BmuI ACTGGG 1 cut(s) 47
BpiI GAAGAC 1 cut(s) 49
BpmI CTGGAG 3 cut(s) 365, 582, 949
BpuMI CCSGG 2 cut(s) 787, 996
BsaBI GATNNNNATC 1 cut(s) 1213
BsaHI GRCGYC 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 967
BsaJI CCNNGG 3 cut(s) 468, 673, 966
BsaWI WCCGGW 4 cut(s) 241, 271, 339, 1036
BsaXI ACNNNNNCTCC 2 cut(s) 947, 977
Bsc4I CCNNNNNNNGG 2 cut(s) 792, 837
Bse1I ACTGG 5 cut(s) 53, 382, 842, 897, 1049
Bse8I GATNNNNATC 1 cut(s) 1213
BseAI TCCGGA 2 cut(s) 241, 271
BseBI CCWGG 3 cut(s) 675, 967, 1238
BseDI CCNNGG 3 cut(s) 468, 673, 966
BseGI GGATG 5 cut(s) 250, 404, 506, 681, 880
BseJI GATNNNNATC 1 cut(s) 1213
BseLI CCNNNNNNNGG 2 cut(s) 792, 837
BseMII CTCAG 2 cut(s) 966, 1091
BseNI ACTGG 5 cut(s) 53, 382, 842, 897, 1049
BseRI GAGGAG 3 cut(s) 83, 1148, 1180
BseXI GCAGC 4 cut(s) 370, 414, 869, 901
Bsh1236I CGCG 2 cut(s) 183, 540
BshFI GGCC 1 cut(s) 1181
BsiHKAI GWGCWC 2 cut(s) 729, 811
BsiHKCI CYCGRG 1 cut(s) 627
BsiSI CCGG 7 cut(s) 242, 272, 310, 340, 786, 995, 1037
BslI CCNNNNNNNGG 2 cut(s) 792, 837
BsmAI GTCTC 3 cut(s) 289, 967, 1130
BsmI GAATGC 2 cut(s) 405, 802
BsnI GGCC 1 cut(s) 1181
Bso31I GGTCTC 1 cut(s) 967
BsoBI CYCGRG 1 cut(s) 627
Bsp1286I GDGCHC 2 cut(s) 729, 811
Bsp13I TCCGGA 2 cut(s) 241, 271
Bsp143I GATC 3 cut(s) 195, 222, 711
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 5 cut(s) 181, 540, 590, 826, 1019
BspANI GGCC 1 cut(s) 1181
BspCNI CTCAG 2 cut(s) 967, 1090
BspEI TCCGGA 2 cut(s) 241, 271
BspFNI CGCG 2 cut(s) 183, 540
BspLI GGNNCC 2 cut(s) 308, 672
BspTNI GGTCTC 1 cut(s) 967
BsrI ACTGG 5 cut(s) 53, 382, 842, 897, 1049
BssECI CCNNGG 3 cut(s) 468, 673, 966
BssMI GATC 3 cut(s) 195, 222, 711
BssNI GRCGYC 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 468
Bst2UI CCWGG 3 cut(s) 675, 967, 1238
Bst4CI ACNGT 3 cut(s) 169, 371, 724
Bst6I CTCTTC 3 cut(s) 285, 485, 1182
BstACI GRCGYC 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 141, 435
BstDEI CTNAG 3 cut(s) 751, 975, 1077
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 5 cut(s) 250, 404, 506, 681, 880
BstFNI CGCG 2 cut(s) 183, 540
BstKTI GATC 3 cut(s) 198, 225, 714
BstMAI GTCTC 3 cut(s) 289, 967, 1130
BstMBI GATC 3 cut(s) 195, 222, 711
BstMWI GCNNNNNNNGC 2 cut(s) 325, 806
BstNI CCWGG 3 cut(s) 675, 967, 1238
BstNSI RCATGY 2 cut(s) 143, 1114
BstSCI CCNGG 5 cut(s) 673, 785, 965, 994, 1236
BstUI CGCG 2 cut(s) 183, 540
BstV1I GCAGC 4 cut(s) 370, 414, 869, 901
BstV2I GAAGAC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 1181
BtgI CCRYGG 1 cut(s) 468
BtgZI GCGATG 1 cut(s) 106
BtsCI GGATG 5 cut(s) 250, 404, 506, 681, 880
Cac8I GCNNGC 2 cut(s) 141, 435
Cfr13I GGNCC 5 cut(s) 239, 670, 828, 840, 950
CseI GACGC 2 cut(s) 45, 546
Csp6I GTAC 2 cut(s) 748, 1251
CviAII CATG 7 cut(s) 136, 140, 418, 469, 526, 862, 1111
CviQI GTAC 2 cut(s) 748, 1251
DdeI CTNAG 3 cut(s) 751, 975, 1077
DpnI GATC 3 cut(s) 197, 224, 713
DpnII GATC 3 cut(s) 195, 222, 711
DraIII CACNNNGTG 1 cut(s) 815
EaeI YGGCCR 1 cut(s) 1179
Eam1104I CTCTTC 3 cut(s) 285, 485, 1182
EarI CTCTTC 3 cut(s) 285, 485, 1182
Eco130I CCWWGG 1 cut(s) 468
Eco31I GGTCTC 1 cut(s) 967
Eco32I GATATC 1 cut(s) 545
Eco47I GGWCC 5 cut(s) 239, 670, 828, 840, 950
Eco57I CTGAAG 3 cut(s) 516, 794, 1044
Eco88I CYCGRG 1 cut(s) 627
EcoO109I RGGNCCY 1 cut(s) 670
EcoRI GAATTC 1 cut(s) 458
EcoRII CCWGG 3 cut(s) 673, 965, 1236
EcoRV GATATC 1 cut(s) 545
EcoT14I CCWWGG 1 cut(s) 468
EcoT22I ATGCAT 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 7 cut(s) 139, 143, 421, 472, 529, 865, 1114
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FatI CATG 7 cut(s) 135, 139, 417, 468, 525, 861, 1110
FbaI TGATCA 2 cut(s) 195, 711
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 5 cut(s) 359, 403, 858, 915, 1019
FokI GGATG 5 cut(s) 257, 411, 513, 668, 867
Fsp4HI GCNGC 5 cut(s) 359, 403, 858, 915, 1019
FspBI CTAG 7 cut(s) 113, 299, 329, 566, 614, 701, 1206
GluI GCNGC 5 cut(s) 359, 403, 858, 915, 1019
GsuI CTGGAG 3 cut(s) 365, 582, 949
HaeIII GGCC 1 cut(s) 1181
HapII CCGG 7 cut(s) 242, 272, 310, 340, 786, 995, 1037
HgaI GACGC 2 cut(s) 45, 546
Hin1I GRCGYC 1 cut(s) 37
Hin1II CATG 7 cut(s) 139, 143, 421, 472, 529, 865, 1114
HincII GTYRAC 2 cut(s) 148, 172
HindII GTYRAC 2 cut(s) 148, 172
HindIII AAGCTT 2 cut(s) 317, 1026
HinfI GANTC 9 cut(s) 530, 549, 595, 886, 1048, 1054, 1085, 1091, 1126
HpaII CCGG 7 cut(s) 242, 272, 310, 340, 786, 995, 1037
HphI GGTGA 4 cut(s) 217, 604, 982, 1051
Hpy166II GTNNAC 5 cut(s) 148, 172, 253, 748, 1042
Hpy8I GTNNAC 5 cut(s) 148, 172, 253, 748, 1042
HpyAV CCTTC 6 cut(s) 140, 230, 491, 661, 769, 1075
HpyCH4III ACNGT 3 cut(s) 169, 371, 724
HpyCH4V TGCA 5 cut(s) 139, 143, 402, 800, 857
HpyF10VI GCNNNNNNNGC 2 cut(s) 325, 806
HpyF3I CTNAG 3 cut(s) 751, 975, 1077
Hsp92I GRCGYC 1 cut(s) 37
Hsp92II CATG 7 cut(s) 139, 143, 421, 472, 529, 865, 1114
Kpn2I TCCGGA 2 cut(s) 241, 271
Ksp22I TGATCA 2 cut(s) 195, 711
Kzo9I GATC 3 cut(s) 195, 222, 711
LmnI GCTCC 2 cut(s) 806, 1219
Lsp1109I GCAGC 4 cut(s) 370, 414, 869, 901
LweI GCATC 2 cut(s) 389, 491
MaeI CTAG 7 cut(s) 113, 299, 329, 566, 614, 701, 1206
MaeIII GTNAC 7 cut(s) 3, 280, 592, 677, 941, 970, 998
MalI GATC 3 cut(s) 197, 224, 713
MboI GATC 3 cut(s) 195, 222, 711
MboII GAAGA 6 cut(s) 49, 302, 454, 472, 659, 1199
MfeI CAATTG 1 cut(s) 1011
MhlI GDGCHC 2 cut(s) 729, 811
MlsI TGGCCA 1 cut(s) 1181
MluCI AATT 7 cut(s) 46, 362, 458, 651, 908, 1011, 1175
MluNI TGGCCA 1 cut(s) 1181
MlyI GAGTC 2 cut(s) 589, 1100
Mox20I TGGCCA 1 cut(s) 1181
Mph1103I ATGCAT 1 cut(s) 141
MroI TCCGGA 2 cut(s) 241, 271
MroXI GAANNNNTTC 1 cut(s) 779
MscI TGGCCA 1 cut(s) 1181
MseI TTAA 3 cut(s) 654, 924, 1211
Msp20I TGGCCA 1 cut(s) 1181
MspI CCGG 7 cut(s) 242, 272, 310, 340, 786, 995, 1037
MspR9I CCNGG 5 cut(s) 675, 787, 967, 996, 1238
MunI CAATTG 1 cut(s) 1011
Mva1269I GAATGC 2 cut(s) 405, 802
MvaI CCWGG 3 cut(s) 675, 967, 1238
MvnI CGCG 2 cut(s) 183, 540
MwoI GCNNNNNNNGC 2 cut(s) 325, 806
NciI CCSGG 2 cut(s) 787, 996
NcoI CCATGG 1 cut(s) 468
NdeII GATC 3 cut(s) 195, 222, 711
NlaIII CATG 7 cut(s) 139, 143, 421, 472, 529, 865, 1114
NlaIV GGNNCC 2 cut(s) 308, 672
NmuCI GTSAC 4 cut(s) 3, 592, 941, 970
NsiI ATGCAT 1 cut(s) 141
NspI RCATGY 2 cut(s) 143, 1114
PaeI GCATGC 1 cut(s) 143
PcsI WCGNNNNNNNCGW 1 cut(s) 544
PctI GAATGC 2 cut(s) 405, 802
PdmI GAANNNNTTC 1 cut(s) 779
PfeI GAWTC 7 cut(s) 530, 549, 886, 1048, 1054, 1085, 1126
PflMI CCANNNNNTGG 1 cut(s) 837
PkrI GCNGC 5 cut(s) 360, 404, 859, 916, 1020
PleI GAGTC 2 cut(s) 589, 1099
PpsI GAGTC 2 cut(s) 589, 1099
PpuMI RGGWCCY 1 cut(s) 670
PshBI ATTAAT 1 cut(s) 1211
PsiI TTATAA 1 cut(s) 1261
Psp5II RGGWCCY 1 cut(s) 670
Psp6I CCWGG 3 cut(s) 673, 965, 1236
PspGI CCWGG 3 cut(s) 673, 965, 1236
PspN4I GGNNCC 2 cut(s) 308, 672
PspPI GGNCC 5 cut(s) 239, 670, 828, 840, 950
PspPPI RGGWCCY 1 cut(s) 670
RsaI GTAC 2 cut(s) 749, 1252
RsaNI GTAC 2 cut(s) 748, 1251
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 3 cut(s) 654, 924, 1211
SatI GCNGC 5 cut(s) 359, 403, 858, 915, 1019
Sau3AI GATC 3 cut(s) 195, 222, 711
Sau96I GGNCC 5 cut(s) 239, 670, 828, 840, 950
ScaI AGTACT 1 cut(s) 1252
SchI GAGTC 2 cut(s) 589, 1100
ScrFI CCNGG 5 cut(s) 675, 787, 967, 996, 1238
SduI GDGCHC 2 cut(s) 729, 811
SfaNI GCATC 2 cut(s) 389, 491
SinI GGWCC 5 cut(s) 239, 670, 828, 840, 950
SpeI ACTAGT 1 cut(s) 298
SphI GCATGC 1 cut(s) 143
Sse9I AATT 7 cut(s) 46, 362, 458, 651, 908, 1011, 1175
SsiI CCGC 5 cut(s) 181, 540, 590, 826, 1019
SspMI CTAG 7 cut(s) 113, 299, 329, 566, 614, 701, 1206
StyD4I CCNGG 5 cut(s) 673, 785, 965, 994, 1236
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 3 cut(s) 169, 371, 724
TaqI TCGA 5 cut(s) 171, 373, 547, 870, 1094
TasI AATT 7 cut(s) 46, 362, 458, 651, 908, 1011, 1175
TatI WGTACW 2 cut(s) 747, 1250
TauI GCSGC 1 cut(s) 1021
TfiI GAWTC 7 cut(s) 530, 549, 886, 1048, 1054, 1085, 1126
Tru1I TTAA 3 cut(s) 654, 924, 1211
Tru9I TTAA 3 cut(s) 654, 924, 1211
TseFI GTSAC 4 cut(s) 3, 592, 941, 970
TseI GCWGC 4 cut(s) 358, 402, 857, 914
Tsp45I GTSAC 4 cut(s) 3, 592, 941, 970
TspDTI ATGAA 4 cut(s) 90, 249, 261, 754
TspGWI ACGGA 1 cut(s) 963
Van91I CCANNNNNTGG 1 cut(s) 837
VpaK11BI GGWCC 5 cut(s) 239, 670, 828, 840, 950
VspI ATTAAT 1 cut(s) 1211
XapI RAATTY 2 cut(s) 458, 908
XceI RCATGY 2 cut(s) 143, 1114
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 779
XspI CTAG 7 cut(s) 113, 299, 329, 566, 614, 701, 1206
ZrmI AGTACT 1 cut(s) 1252
Zsp2I ATGCAT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.