Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8485291.1

Orthogroup ID

OG0004935

Physical Location & Seq

Genomic Coordinates Forward (+)

1119 .. 2228

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8485291.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atgcatccggttgacctcaaaagtcataaaattgttgaccatcgccaggaaccaaccttgattactactactaatgtccaagaagagatcagcattgatgaaggtccagatgaagtttacgaccctctaatccctcccgataatgtaacaaaagaagaaagacaagtgtggttcaggcggaagcttccagagctggagatactccggtccaatagcttgacgcagcaattccacagtcgagttctccagtttctcaacaacggatgcagcattcaattctacatgatatggttttcaccagcgaagtcattcggaaaaagagaattcttcgccatggacagcctcttcaaagctcatcctcaaggatgtttgatgctattatcgaaaagcatggattcgggacgcggataccgaatcctgaaaccattacttgatggaggattcaaaatactcgcggtgactccagacttgccatttctagtcaaaaacactccaggtgaaatttggcttggcgaaatgaagagtgggaggagagacccaggttacatcccattgtcccaaaacctagccaatctgatcagacttgccgtgctttacaagtatggaggtgtatacttagacacagacttcataactctgaaggatttctcggggttgaggaatacaattggagcacaaaacgtagatttagagtccaaaaactggaccatactaaacaatgcagtcatgatcttcgacataaaccatccgcttctactagacttcatgggagaatttgcttcaacatttaatggaaacaaatggggtcacaacggaccttacttggtctccagggtaactgagaaaatggggcgcacaccgggttacaaccttacaattttgcctcccgaggcgttttatccggtggaatggaataaaattcggaggattttccggaagcctcagaaggaatcggagtcgagatgggtggaaagcatgttgaatgagttgaatgaaggggagacttatgctctacacctatggaacaagagaagtagagaattgaccattgaagagggaagtgtcatggctagactaatatcggcgcattgtgttatttgccggacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00601 ko00603 ko01100 map00601 map00603 map01100

Pfam Domains

Protein Families

Gb3_synth Gly_transf_sug

Protein Analysis

369

Amino Acids

42.5

Weight (kDa)

7.7

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38150
fragaria_vesca	FvH4_6g11740 FvH4_6g11750
prunus_persica	Prupe.2G284900_v2.0.a1 Prupe.6G274400_v2.0.a1
pyrus_communis	pycom04g13500
rosa_chinensis	RchiOBHm_Chr3g0463521 RchiOBHm_Chr3g0463531
rosa_laevigata	RLG00000019557 RLG00000024780 RLG00000024781
rosa_multiflora	Rmu_co8351885.1_g000001 Rmu_co8485291.1_g000001 Rmu_sc0000923.1_g000022 Rmu_sc0000923.1_g000023 Rmu_sc0003267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416480 Rroxscaffold_6G00416490
rosa_rugosa	Rorug03G0065400 Rorug03G0065700
rosa_samantha	Rh3AG122600 Rh3AG122700 Rh3BG127300 Rh3BG127400 Rh3CG129200 Rh3CG129300 Rh3DG128100 Rh3DG128200
rosa_wichuraiana	Rw0G010570 Rw0G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	702
AccI	GTMKAC	1 cut(s)	612
AccII	CGCG	2 cut(s)	405, 455
AccIII	TCCGGA	1 cut(s)	933
AciI	CCGC	4 cut(s)	178, 405, 455, 749
AcsI	RAATTY	4 cut(s)	323, 501, 773, 918
AcuI	CTGAAG	1 cut(s)	659
AfiI	CCNNNNNNNGG	2 cut(s)	46, 702
AgsI	TTSAA	7 cut(s)	275, 349, 445, 783, 982, 991, 1052
AjnI	CCWGG	4 cut(s)	45, 493, 538, 830
AjuI	GAANNNNNNNTTGG	2 cut(s)	492, 524
AluBI	AGCT	4 cut(s)	184, 193, 216, 353
AluI	AGCT	4 cut(s)	184, 193, 216, 353
Alw21I	GWGCWC	1 cut(s)	676
Alw26I	GTCTC	3 cut(s)	528, 832, 995
Ama87I	CYCGRG	2 cut(s)	649, 887
Aor13HI	TCCGGA	1 cut(s)	933
ApeKI	GCWGC	2 cut(s)	223, 267
ApoI	RAATTY	4 cut(s)	323, 501, 773, 918
Asp700I	GAANNNNTTC	2 cut(s)	308, 644
AspLEI	GCGC	2 cut(s)	855, 1087
AspS9I	GGNCC	4 cut(s)	104, 207, 705, 815
AsuC2I	CCSGG	1 cut(s)	861
AsuHPI	GGTGA	3 cut(s)	288, 469, 509
AvaI	CYCGRG	2 cut(s)	649, 887
AvaII	GGWCC	4 cut(s)	104, 207, 705, 815
BaeI	ACNNNNGTAYC	2 cut(s)	191, 224
Bbv12I	GWGCWC	1 cut(s)	676
BbvI	GCAGC	2 cut(s)	235, 279
BccI	CCATC	4 cut(s)	48, 428, 753, 957
BceAI	ACGGC	1 cut(s)	572
BciT130I	CCWGG	4 cut(s)	47, 495, 540, 832
BciVI	GTATCC	1 cut(s)	401
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	861
BcoDI	GTCTC	3 cut(s)	528, 832, 995
BfaI	CTAG	4 cut(s)	479, 566, 758, 1071
BfuI	GTATCC	1 cut(s)	401
BisI	GCNGC	2 cut(s)	224, 268
BlsI	GCNGC	2 cut(s)	225, 269
Bme1390I	CCNGG	5 cut(s)	47, 495, 540, 832, 861
Bme18I	GGWCC	4 cut(s)	104, 207, 705, 815
BmeT110I	CYCGRG	2 cut(s)	649, 887
BmgT120I	GGNCC	4 cut(s)	104, 207, 705, 815
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	5 cut(s)	47, 495, 540, 832, 861
BmsI	GCATC	3 cut(s)	13, 254, 363
BpmI	CTGGAG	5 cut(s)	215, 230, 447, 477, 814
BpuEI	CTTGAG	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	861
BsaI	GGTCTC	2 cut(s)	528, 832
BsaJI	CCNNGG	4 cut(s)	333, 538, 831, 888
BsaWI	WCCGGW	4 cut(s)	7, 204, 901, 933
BsaXI	ACNNNNNCTCC	2 cut(s)	812, 842
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 702
Bse1I	ACTGG	2 cut(s)	247, 707
BseAI	TCCGGA	1 cut(s)	933
BseBI	CCWGG	4 cut(s)	47, 495, 540, 832
BseDI	CCNNGG	4 cut(s)	333, 538, 831, 888
BseGI	GGATG	6 cut(s)	4, 269, 355, 371, 546, 745
BseLI	CCNNNNNNNGG	2 cut(s)	46, 702
BseMII	CTCAG	2 cut(s)	831, 956
BseNI	ACTGG	2 cut(s)	247, 707
BseRI	GAGGAG	1 cut(s)	544
BseXI	GCAGC	2 cut(s)	235, 279
Bsh1236I	CGCG	2 cut(s)	405, 455
BsiHKAI	GWGCWC	1 cut(s)	676
BsiHKCI	CYCGRG	2 cut(s)	649, 887
BsiSI	CCGG	6 cut(s)	8, 205, 860, 902, 934, 1102
BslFI	GGGAC	2 cut(s)	414, 541
BslI	CCNNNNNNNGG	2 cut(s)	46, 702
BsmAI	GTCTC	3 cut(s)	528, 832, 995
BsmFI	GGGAC	2 cut(s)	414, 541
BsmI	GAATGC	1 cut(s)	270
Bso31I	GGTCTC	2 cut(s)	528, 832
BsoBI	CYCGRG	2 cut(s)	649, 887
Bsp1286I	GDGCHC	1 cut(s)	676
Bsp13I	TCCGGA	1 cut(s)	933
Bsp143I	GATC	3 cut(s)	87, 576, 729
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	4 cut(s)	178, 405, 455, 749
BspCNI	CTCAG	2 cut(s)	832, 955
BspEI	TCCGGA	1 cut(s)	933
BspFNI	CGCG	2 cut(s)	405, 455
BspHI	TCATGA	1 cut(s)	726
BspLI	GGNNCC	1 cut(s)	51
BspTNI	GGTCTC	2 cut(s)	528, 832
BsrI	ACTGG	2 cut(s)	247, 707
BssECI	CCNNGG	4 cut(s)	333, 538, 831, 888
BssMI	GATC	3 cut(s)	87, 576, 729
BssNAI	GTATAC	1 cut(s)	613
BssT1I	CCWWGG	1 cut(s)	333
Bst1107I	GTATAC	1 cut(s)	613
Bst2UI	CCWGG	4 cut(s)	47, 495, 540, 832
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	4 cut(s)	78, 350, 515, 1047
BstDEI	CTNAG	3 cut(s)	616, 840, 942
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	6 cut(s)	4, 269, 355, 371, 546, 745
BstFNI	CGCG	2 cut(s)	405, 455
BstHHI	GCGC	2 cut(s)	855, 1087
BstKTI	GATC	3 cut(s)	90, 579, 732
BstMAI	GTCTC	3 cut(s)	528, 832, 995
BstMBI	GATC	3 cut(s)	87, 576, 729
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	4 cut(s)	47, 495, 540, 832
BstNSI	RCATGY	1 cut(s)	979
BstSCI	CCNGG	5 cut(s)	45, 493, 538, 830, 859
BstUI	CGCG	2 cut(s)	405, 455
BstV1I	GCAGC	2 cut(s)	235, 279
BstZ17I	GTATAC	1 cut(s)	613
BsuI	GTATCC	1 cut(s)	401
BtgI	CCRYGG	1 cut(s)	333
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	6 cut(s)	4, 269, 355, 371, 546, 745
CciI	TCATGA	1 cut(s)	726
CfoI	GCGC	2 cut(s)	855, 1087
Cfr13I	GGNCC	4 cut(s)	104, 207, 705, 815
CseI	GACGC	2 cut(s)	229, 411
CviAII	CATG	7 cut(s)	283, 334, 391, 727, 766, 976, 1066
CviJI	RGCY	9 cut(s)	184, 193, 216, 342, 353, 508, 569, 940, 1070
CviKI_1	RGCY	9 cut(s)	184, 193, 216, 342, 353, 508, 569, 940, 1070
DdeI	CTNAG	3 cut(s)	616, 840, 942
DpnI	GATC	3 cut(s)	89, 578, 731
DpnII	GATC	3 cut(s)	87, 576, 729
Eam1104I	CTCTTC	4 cut(s)	78, 350, 515, 1047
EarI	CTCTTC	4 cut(s)	78, 350, 515, 1047
EciI	GGCGGA	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	333
Eco31I	GGTCTC	2 cut(s)	528, 832
Eco47I	GGWCC	4 cut(s)	104, 207, 705, 815
Eco57I	CTGAAG	1 cut(s)	659
Eco88I	CYCGRG	2 cut(s)	649, 887
EcoRI	GAATTC	1 cut(s)	323
EcoRII	CCWGG	4 cut(s)	45, 493, 538, 830
EcoT14I	CCWWGG	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	7 cut(s)	286, 337, 394, 730, 769, 979, 1069
FaqI	GGGAC	2 cut(s)	414, 541
FatI	CATG	7 cut(s)	282, 333, 390, 726, 765, 975, 1065
FbaI	TGATCA	1 cut(s)	576
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	2 cut(s)	224, 268
FokI	GGATG	5 cut(s)	276, 342, 378, 533, 732
Fsp4HI	GCNGC	2 cut(s)	224, 268
FspBI	CTAG	4 cut(s)	479, 566, 758, 1071
GlaI	GCGC	2 cut(s)	854, 1086
GluI	GCNGC	2 cut(s)	224, 268
GsuI	CTGGAG	5 cut(s)	215, 230, 447, 477, 814
HapII	CCGG	6 cut(s)	8, 205, 860, 902, 934, 1102
HgaI	GACGC	2 cut(s)	229, 411
HhaI	GCGC	2 cut(s)	855, 1087
Hin1II	CATG	7 cut(s)	286, 337, 394, 730, 769, 979, 1069
Hin6I	GCGC	2 cut(s)	853, 1085
HinP1I	GCGC	2 cut(s)	853, 1085
HincII	GTYRAC	2 cut(s)	13, 37
HindII	GTYRAC	2 cut(s)	13, 37
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	7 cut(s)	395, 414, 441, 460, 692, 950, 956
HpaII	CCGG	6 cut(s)	8, 205, 860, 902, 934, 1102
HphI	GGTGA	3 cut(s)	288, 469, 509
Hpy166II	GTNNAC	4 cut(s)	13, 37, 118, 613
Hpy188I	TCNGA	7 cut(s)	314, 576, 581, 639, 924, 945, 955
Hpy8I	GTNNAC	4 cut(s)	13, 37, 118, 613
HpyAV	CCTTC	4 cut(s)	95, 634, 940, 989
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	681
HpyCH4V	TGCA	3 cut(s)	4, 267, 722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	3 cut(s)	616, 840, 942
HpySE526I	ACGT	1 cut(s)	681
Hsp92II	CATG	7 cut(s)	286, 337, 394, 730, 769, 979, 1069
HspAI	GCGC	2 cut(s)	853, 1085
Kpn2I	TCCGGA	1 cut(s)	933
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	3 cut(s)	87, 576, 729
LmnI	GCTCC	1 cut(s)	671
Lsp1109I	GCAGC	2 cut(s)	235, 279
LweI	GCATC	3 cut(s)	13, 254, 363
MaeI	CTAG	4 cut(s)	479, 566, 758, 1071
MaeII	ACGT	1 cut(s)	681
MaeIII	GTNAC	6 cut(s)	145, 457, 542, 806, 835, 863
MalI	GATC	3 cut(s)	89, 578, 731
MboI	GATC	3 cut(s)	87, 576, 729
MboII	GAAGA	7 cut(s)	95, 167, 319, 337, 532, 724, 1064
MfeI	CAATTG	1 cut(s)	666
MhlI	GDGCHC	1 cut(s)	676
MlyI	GAGTC	3 cut(s)	454, 701, 965
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	933
MroXI	GAANNNNTTC	2 cut(s)	308, 644
MseI	TTAA	1 cut(s)	789
MspI	CCGG	6 cut(s)	8, 205, 860, 902, 934, 1102
MspR9I	CCNGG	5 cut(s)	47, 495, 540, 832, 861
MunI	CAATTG	1 cut(s)	666
Mva1269I	GAATGC	1 cut(s)	270
MvaI	CCWGG	4 cut(s)	47, 495, 540, 832
MvnI	CGCG	2 cut(s)	405, 455
MwoI	GCNNNNNNNGC	1 cut(s)	190
NciI	CCSGG	1 cut(s)	861
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	3 cut(s)	87, 576, 729
NlaIII	CATG	7 cut(s)	286, 337, 394, 730, 769, 979, 1069
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	457, 806
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	979
PagI	TCATGA	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	1 cut(s)	409
PctI	GAATGC	1 cut(s)	270
PdmI	GAANNNNTTC	2 cut(s)	308, 644
PfeI	GAWTC	4 cut(s)	395, 414, 441, 950
PflMI	CCANNNNNTGG	1 cut(s)	702
PkrI	GCNGC	2 cut(s)	225, 269
PleI	GAGTC	3 cut(s)	454, 700, 964
PpsI	GAGTC	3 cut(s)	454, 700, 964
Psp6I	CCWGG	4 cut(s)	45, 493, 538, 830
PspGI	CCWGG	4 cut(s)	45, 493, 538, 830
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	4 cut(s)	104, 207, 705, 815
SaqAI	TTAA	1 cut(s)	789
SatI	GCNGC	2 cut(s)	224, 268
Sau3AI	GATC	3 cut(s)	87, 576, 729
Sau96I	GGNCC	4 cut(s)	104, 207, 705, 815
SchI	GAGTC	3 cut(s)	454, 701, 965
ScrFI	CCNGG	5 cut(s)	47, 495, 540, 832, 861
SduI	GDGCHC	1 cut(s)	676
SfaNI	GCATC	3 cut(s)	13, 254, 363
SinI	GGWCC	4 cut(s)	104, 207, 705, 815
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
SsiI	CCGC	4 cut(s)	178, 405, 455, 749
SspMI	CTAG	4 cut(s)	479, 566, 758, 1071
StyD4I	CCNGG	5 cut(s)	45, 493, 538, 830, 859
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	1 cut(s)	684
TaqI	TCGA	4 cut(s)	238, 383, 735, 959
TfiI	GAWTC	4 cut(s)	395, 414, 441, 950
Tru1I	TTAA	1 cut(s)	789
Tru9I	TTAA	1 cut(s)	789
TseFI	GTSAC	2 cut(s)	457, 806
TseI	GCWGC	2 cut(s)	223, 267
Tsp45I	GTSAC	2 cut(s)	457, 806
TspDTI	ATGAA	6 cut(s)	114, 126, 533, 619, 754, 1008
TspGWI	ACGGA	2 cut(s)	276, 828
Van91I	CCANNNNNTGG	1 cut(s)	702
VpaK11BI	GGWCC	4 cut(s)	104, 207, 705, 815
XapI	RAATTY	4 cut(s)	323, 501, 773, 918
XceI	RCATGY	1 cut(s)	979
XcmI	CCANNNNNNNNNTGG	1 cut(s)	501
XmiI	GTMKAC	1 cut(s)	612
XmnI	GAANNNNTTC	2 cut(s)	308, 644
XspI	CTAG	4 cut(s)	479, 566, 758, 1071
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.