Rh3DG128200

Glycosyltransferase sugar-binding region containing DXD motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004935
Physical Location & Seq
Forward (+)
10896851 .. 10898116
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG128200.1

Sequence Viewer

Length: 1098 bp
ATGAAAAGAATATCCCAGAAAGTGCTTGATTATAGGCTCCTTAGGCGCACTGTCGAATCCCCTGTCTTCACCACCCTCGCATTTGCTGCCATATTCTTCTTCATCTATGCAGACACCATCGTCTCTAACCTTCCCATGCCACCTGCTTTCTTGAGCTCAAGTCATGAACATCATCATGATGATCACCAGACCACCGAGACTGAGAGCGTAAGGAAACTCGCCATCCAAGAAAAGATTGATGAATTTGCAAATGCTGAACCTCTGGATCCCCTGATTCCTCCAGACAATGTCACGAAAGAGGAGAGACTTGTGTGGTTCCGGCGCAAACTCCCAGAACTTGAGATACTCAAATCCAATAATTTTACGCAGAAATTCCACAGTCGGGTGCTCGAGTTCCTCAACAATGGATGCAGTAGTCAATTCTACATGATATGGCTTTCACCGGCAAAGTCATTTGGGAAAAGAGAGTTCTTGGCCATGGACACCCTCTTCAAATCTCACCCTAAAGGCTGCTTGATGATCATCTCTAAATCCATGGATTCAGGACTGGGATACAGAATCCTGAAGCCACTTCTGGATCGAGAATTCAAAATCCTCGCGATCACGCCAGACTTACCATTTCTAGTGAAGAACACACCAGCTGAGTCTTGGCTTGATGAAATGAAGAGTGGAAGAAGGGACCCAGGTCACATTCCATTGTCTCAAAACCTATCAAATCTTATTAGGCTGGCAATTCTGTACAAATACGGAGGTGTATACTTAGACACAGACTTCATAATTCTGAAGGACTTCTCTGGTTTGAGGAATGCAGTTGGGGCACAAATGGGAAGTACACCTGGTTATAACCTTACGGTTTTGCCTCCGGAGGCATTTTATCCGGTGGACTGGAATAGGATTTGGAGGCTTTATAGGAAGCCAAAGAAGGATTTGGAATCAAGATGGGTGGAAAGGATATTGAATGAGTTGAATGAAGGGGAGACTTATGCCGTGCACCTGTGGAACAGGCGAAGTAGAGCATTGGCCATTGAGGAGGGAAGTGTCATGGCTAGACTAATCTCAGAGCACTGTGTCATCTGCCAGGACATTTATAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00601 ko00603 ko01100 map00601 map00603 map01100
Pfam Domains
Protein Families
Gb3_synth Gly_transf_sug

Protein Analysis

365

Amino Acids

42.23

Weight (kDa)

8.51

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly_transf_sug PF04488 155 - 273 1.6e-21 Glycosyltransferase sugar-binding region containing DXD motif
Gb3_synth PF04572 277 - 360 1.9e-13 Alpha 1,4-glycosyltransferase conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 843
AarI CACCTGC 1 cut(s) 151
AasI GACNNNNNNGTC 1 cut(s) 119
Acc36I ACCTGC 1 cut(s) 151
AccI GTMKAC 1 cut(s) 756
AccII CGCG 1 cut(s) 599
AccIII TCCGGA 1 cut(s) 862
AclWI GGATC 3 cut(s) 260, 273, 585
AcoI YGGCCR 2 cut(s) 474, 1020
AcsI RAATTY 3 cut(s) 242, 371, 584
AcuI CTGAAG 2 cut(s) 584, 803
AfaI GTAC 2 cut(s) 740, 832
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 4 cut(s) 493, 589, 958, 967
AjnI CCWGG 3 cut(s) 682, 835, 1077
AluBI AGCT 2 cut(s) 156, 641
AluI AGCT 2 cut(s) 156, 641
Alw21I GWGCWC 4 cut(s) 158, 390, 993, 1065
Alw26I GTCTC 5 cut(s) 127, 191, 298, 705, 971
Alw44I GTGCAC 1 cut(s) 989
AlwI GGATC 3 cut(s) 260, 273, 585
Ama87I CYCGRG 1 cut(s) 389
Aor13HI TCCGGA 1 cut(s) 862
AoxI GGCC 2 cut(s) 474, 1020
ApaLI GTGCAC 1 cut(s) 989
ApeKI GCWGC 2 cut(s) 86, 510
ApoI RAATTY 3 cut(s) 242, 371, 584
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
Asp700I GAANNNNTTC 1 cut(s) 788
AspLEI GCGC 2 cut(s) 48, 324
AspS9I GGNCC 1 cut(s) 679
AsuHPI GGTGA 4 cut(s) 61, 176, 432, 491
AvaI CYCGRG 1 cut(s) 389
AvaII GGWCC 1 cut(s) 679
AxyI CCTNAGG 1 cut(s) 41
BaeGI GKGCMC 2 cut(s) 820, 993
BalI TGGCCA 2 cut(s) 476, 1022
BamHI GGATCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 58
Bbv12I GWGCWC 4 cut(s) 158, 390, 993, 1065
BbvI GCAGC 2 cut(s) 73, 497
BccI CCATC 3 cut(s) 125, 230, 933
BceAI ACGGC 1 cut(s) 971
BciT130I CCWGG 3 cut(s) 684, 837, 1079
BciVI GTATCC 1 cut(s) 545
BclI TGATCA 2 cut(s) 181, 519
BcoDI GTCTC 5 cut(s) 127, 191, 298, 705, 971
BfaI CTAG 2 cut(s) 623, 1047
BfuAI ACCTGC 1 cut(s) 151
BfuI GTATCC 1 cut(s) 545
BisI GCNGC 2 cut(s) 87, 511
BlsI GCNGC 2 cut(s) 88, 512
Bme1390I CCNGG 3 cut(s) 684, 837, 1079
Bme18I GGWCC 1 cut(s) 679
BmeT110I CYCGRG 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 679
BmiI GGNNCC 5 cut(s) 38, 267, 317, 680, 681
BmrFI CCNGG 3 cut(s) 684, 837, 1079
BmrI ACTGGG 1 cut(s) 557
BmsI GCATC 1 cut(s) 398
BmuI ACTGGG 1 cut(s) 557
BoxI GACNNNNGTC 1 cut(s) 684
BpiI GAAGAC 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 264
BpuEI CTTGAG 3 cut(s) 142, 172, 359
BsaBI GATNNNNATC 1 cut(s) 521
BsaJI CCNNGG 3 cut(s) 477, 534, 682
BsaWI WCCGGW 2 cut(s) 862, 877
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 2 cut(s) 552, 890
Bse21I CCTNAGG 1 cut(s) 41
Bse8I GATNNNNATC 1 cut(s) 521
BseAI TCCGGA 1 cut(s) 862
BseBI CCWGG 3 cut(s) 684, 837, 1079
BseDI CCNNGG 3 cut(s) 477, 534, 682
BseGI GGATG 2 cut(s) 222, 413
BseJI GATNNNNATC 1 cut(s) 521
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMII CTCAG 3 cut(s) 192, 633, 1071
BseNI ACTGG 2 cut(s) 552, 890
BseRI GAGGAG 2 cut(s) 314, 1043
BseSI GKGCMC 2 cut(s) 820, 993
BseXI GCAGC 2 cut(s) 73, 497
Bsh1236I CGCG 1 cut(s) 599
BshFI GGCC 2 cut(s) 476, 1022
BsiHKAI GWGCWC 4 cut(s) 158, 390, 993, 1065
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 4 cut(s) 319, 443, 863, 878
BslFI GGGAC 1 cut(s) 692
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 5 cut(s) 127, 191, 298, 705, 971
BsmBI CGTCTC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 692
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 2 cut(s) 476, 1022
BsoBI CYCGRG 1 cut(s) 389
Bsp1286I GDGCHC 5 cut(s) 158, 390, 820, 993, 1065
Bsp13I TCCGGA 1 cut(s) 862
Bsp1407I TGTACA 1 cut(s) 738
Bsp143I GATC 5 cut(s) 181, 265, 519, 577, 600
Bsp19I CCATGG 2 cut(s) 477, 534
Bsp68I TCGCGA 1 cut(s) 599
BspANI GGCC 2 cut(s) 476, 1022
BspCNI CTCAG 3 cut(s) 193, 634, 1070
BspEI TCCGGA 1 cut(s) 862
BspFNI CGCG 1 cut(s) 599
BspHI TCATGA 2 cut(s) 163, 175
BspLI GGNNCC 5 cut(s) 38, 267, 317, 680, 681
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 3 cut(s) 260, 273, 585
BsrFI RCCGGY 1 cut(s) 442
BsrGI TGTACA 1 cut(s) 738
BsrI ACTGG 2 cut(s) 552, 890
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 3 cut(s) 477, 534, 682
BssMI GATC 5 cut(s) 181, 265, 519, 577, 600
BssNAI GTATAC 1 cut(s) 757
BssT1I CCWWGG 2 cut(s) 477, 534
Bst1107I GTATAC 1 cut(s) 757
Bst2UI CCWGG 3 cut(s) 684, 837, 1079
Bst4CI ACNGT 4 cut(s) 52, 380, 853, 1067
Bst6I CTCTTC 2 cut(s) 494, 659
BstAPI GCANNNNNTGC 1 cut(s) 86
BstAUI TGTACA 1 cut(s) 738
BstC8I GCNNGC 1 cut(s) 729
BstDEI CTNAG 5 cut(s) 41, 201, 642, 760, 1057
BstDSI CCRYGG 2 cut(s) 477, 534
BstF5I GGATG 2 cut(s) 222, 413
BstFNI CGCG 1 cut(s) 599
BstHHI GCGC 2 cut(s) 48, 324
BstKTI GATC 5 cut(s) 184, 268, 522, 580, 603
BstMAI GTCTC 5 cut(s) 127, 191, 298, 705, 971
BstMBI GATC 5 cut(s) 181, 265, 519, 577, 600
BstMWI GCNNNNNNNGC 3 cut(s) 43, 86, 815
BstNI CCWGG 3 cut(s) 684, 837, 1079
BstPAI GACNNNNGTC 1 cut(s) 684
BstSCI CCNGG 3 cut(s) 682, 835, 1077
BstSLI GKGCMC 2 cut(s) 820, 993
BstUI CGCG 1 cut(s) 599
BstV1I GCAGC 2 cut(s) 73, 497
BstV2I GAAGAC 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BstZ17I GTATAC 1 cut(s) 757
Bsu36I CCTNAGG 1 cut(s) 41
BsuI GTATCC 1 cut(s) 545
BsuRI GGCC 2 cut(s) 476, 1022
BtgI CCRYGG 2 cut(s) 477, 534
BtsCI GGATG 2 cut(s) 222, 413
BtsIMutI CAGTG 2 cut(s) 48, 1063
BtuMI TCGCGA 1 cut(s) 599
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 729
CciI TCATGA 2 cut(s) 163, 175
CfoI GCGC 2 cut(s) 48, 324
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 679
CsiI ACCWGGT 1 cut(s) 835
Csp6I GTAC 2 cut(s) 739, 831
CspCI CAANNNNNGTGG 2 cut(s) 924, 959
CviAII CATG 7 cut(s) 136, 164, 176, 427, 478, 535, 1042
CviQI GTAC 2 cut(s) 739, 831
DdeI CTNAG 5 cut(s) 41, 201, 642, 760, 1057
DpnI GATC 5 cut(s) 183, 267, 521, 579, 602
DpnII GATC 5 cut(s) 181, 265, 519, 577, 600
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
EaeI YGGCCR 2 cut(s) 474, 1020
Eam1104I CTCTTC 2 cut(s) 494, 659
EarI CTCTTC 2 cut(s) 494, 659
Ecl136II GAGCTC 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 477, 534
Eco24I GRGCYC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 679
Eco53kI GAGCTC 1 cut(s) 156
Eco57I CTGAAG 2 cut(s) 584, 803
Eco81I CCTNAGG 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 156
EcoO109I RGGNCCY 1 cut(s) 679
EcoRI GAATTC 1 cut(s) 584
EcoRII CCWGG 3 cut(s) 682, 835, 1077
EcoT14I CCWWGG 2 cut(s) 477, 534
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 2 cut(s) 477, 534
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 7 cut(s) 139, 167, 179, 430, 481, 538, 1045
FaqI GGGAC 1 cut(s) 692
FatI CATG 7 cut(s) 135, 163, 175, 426, 477, 534, 1041
FbaI TGATCA 2 cut(s) 181, 519
FblI GTMKAC 1 cut(s) 756
Fnu4HI GCNGC 2 cut(s) 87, 511
FokI GGATG 2 cut(s) 209, 420
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 2 cut(s) 87, 511
FspBI CTAG 2 cut(s) 623, 1047
GlaI GCGC 2 cut(s) 47, 323
GluI GCNGC 2 cut(s) 87, 511
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 2 cut(s) 476, 1022
HapII CCGG 4 cut(s) 319, 443, 863, 878
HhaI GCGC 2 cut(s) 48, 324
Hin1II CATG 7 cut(s) 139, 167, 179, 430, 481, 538, 1045
Hin6I GCGC 2 cut(s) 46, 322
HinP1I GCGC 2 cut(s) 46, 322
HinfI GANTC 6 cut(s) 56, 274, 539, 558, 644, 932
HpaII CCGG 4 cut(s) 319, 443, 863, 878
HphI GGTGA 4 cut(s) 61, 176, 432, 491
Hpy166II GTNNAC 4 cut(s) 757, 833, 883, 991
Hpy188I TCNGA 2 cut(s) 783, 1060
Hpy8I GTNNAC 4 cut(s) 757, 833, 883, 991
HpyAV CCTTC 5 cut(s) 140, 669, 778, 916, 965
HpyCH4III ACNGT 4 cut(s) 52, 380, 853, 1067
HpyCH4V TGCA 5 cut(s) 110, 248, 411, 809, 991
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 86, 815
HpyF3I CTNAG 5 cut(s) 41, 201, 642, 760, 1057
Hsp92II CATG 7 cut(s) 139, 167, 179, 430, 481, 538, 1045
HspAI GCGC 2 cut(s) 46, 322
KflI GGGWCCC 1 cut(s) 679
Kpn2I TCCGGA 1 cut(s) 862
Ksp22I TGATCA 2 cut(s) 181, 519
Kzo9I GATC 5 cut(s) 181, 265, 519, 577, 600
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 2 cut(s) 73, 497
LweI GCATC 1 cut(s) 398
MabI ACCWGGT 1 cut(s) 835
MaeI CTAG 2 cut(s) 623, 1047
MaeIII GTNAC 2 cut(s) 289, 686
MalI GATC 5 cut(s) 183, 267, 521, 579, 602
MboI GATC 5 cut(s) 181, 265, 519, 577, 600
MboII GAAGA 7 cut(s) 58, 88, 91, 481, 640, 676, 684
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 5 cut(s) 158, 390, 820, 993, 1065
MlsI TGGCCA 2 cut(s) 476, 1022
MluCI AATT 7 cut(s) 242, 358, 371, 419, 584, 732, 777
MluNI TGGCCA 2 cut(s) 476, 1022
MlyI GAGTC 1 cut(s) 653
Mox20I TGGCCA 2 cut(s) 476, 1022
MroI TCCGGA 1 cut(s) 862
MroXI GAANNNNTTC 1 cut(s) 788
MscI TGGCCA 2 cut(s) 476, 1022
MseI TTAA 1 cut(s) 1096
MslI CAYNNNNRTG 2 cut(s) 174, 177
Msp20I TGGCCA 2 cut(s) 476, 1022
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 4 cut(s) 319, 443, 863, 878
MspR9I CCNGG 3 cut(s) 684, 837, 1079
Mva1269I GAATGC 1 cut(s) 811
MvaI CCWGG 3 cut(s) 684, 837, 1079
MvnI CGCG 1 cut(s) 599
MwoI GCNNNNNNNGC 3 cut(s) 43, 86, 815
NcoI CCATGG 2 cut(s) 477, 534
NdeII GATC 5 cut(s) 181, 265, 519, 577, 600
NlaIII CATG 7 cut(s) 139, 167, 179, 430, 481, 538, 1045
NlaIV GGNNCC 5 cut(s) 38, 267, 317, 680, 681
NmuCI GTSAC 2 cut(s) 289, 686
NruI TCGCGA 1 cut(s) 599
PaeR7I CTCGAG 1 cut(s) 389
PagI TCATGA 2 cut(s) 163, 175
PaqCI CACCTGC 1 cut(s) 151
PctI GAATGC 1 cut(s) 811
PdmI GAANNNNTTC 1 cut(s) 788
PfeI GAWTC 5 cut(s) 56, 274, 539, 558, 932
PflFI GACNNNGTC 1 cut(s) 287
PkrI GCNGC 2 cut(s) 88, 512
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
PpuMI RGGWCCY 1 cut(s) 679
PshAI GACNNNNGTC 1 cut(s) 684
PsiI TTATAA 1 cut(s) 843
Psp124BI GAGCTC 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 679
Psp6I CCWGG 3 cut(s) 682, 835, 1077
PspGI CCWGG 3 cut(s) 682, 835, 1077
PspN4I GGNNCC 5 cut(s) 38, 267, 317, 680, 681
PspPI GGNCC 1 cut(s) 679
PspPPI RGGWCCY 1 cut(s) 679
PspXI VCTCGAGB 1 cut(s) 389
PsrI GAACNNNNNNTAC 2 cut(s) 327, 359
PsuI RGATCY 1 cut(s) 265
PsyI GACNNNGTC 1 cut(s) 287
PvuII CAGCTG 1 cut(s) 641
RruI TCGCGA 1 cut(s) 599
RsaI GTAC 2 cut(s) 740, 832
RsaNI GTAC 2 cut(s) 739, 831
RseI CAYNNNNRTG 2 cut(s) 174, 177
SacI GAGCTC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 1096
SatI GCNGC 2 cut(s) 87, 511
Sau3AI GATC 5 cut(s) 181, 265, 519, 577, 600
Sau96I GGNCC 1 cut(s) 679
SchI GAGTC 1 cut(s) 653
ScrFI CCNGG 3 cut(s) 684, 837, 1079
SduI GDGCHC 5 cut(s) 158, 390, 820, 993, 1065
SexAI ACCWGGT 1 cut(s) 835
SfaNI GCATC 1 cut(s) 398
Sfr274I CTCGAG 1 cut(s) 389
SinI GGWCC 1 cut(s) 679
SlaI CTCGAG 1 cut(s) 389
SmiMI CAYNNNNRTG 2 cut(s) 174, 177
SmlI CTYRAG 4 cut(s) 151, 157, 338, 389
SmoI CTYRAG 4 cut(s) 151, 157, 338, 389
Sse9I AATT 7 cut(s) 242, 358, 371, 419, 584, 732, 777
SspMI CTAG 2 cut(s) 623, 1047
SstI GAGCTC 1 cut(s) 158
StyD4I CCNGG 3 cut(s) 682, 835, 1077
StyI CCWWGG 2 cut(s) 477, 534
TaaI ACNGT 4 cut(s) 52, 380, 853, 1067
TaqI TCGA 3 cut(s) 54, 390, 580
TasI AATT 7 cut(s) 242, 358, 371, 419, 584, 732, 777
TatI WGTACW 2 cut(s) 738, 830
TfiI GAWTC 5 cut(s) 56, 274, 539, 558, 932
Tru1I TTAA 1 cut(s) 1096
Tru9I TTAA 1 cut(s) 1096
TscAI CASTG 2 cut(s) 55, 1070
TseFI GTSAC 2 cut(s) 289, 686
TseI GCWGC 2 cut(s) 86, 510
Tsp45I GTSAC 2 cut(s) 289, 686
TspDTI ATGAA 8 cut(s) 17, 91, 180, 255, 672, 677, 763, 984
TspGWI ACGGA 1 cut(s) 762
TspRI CASTG 2 cut(s) 55, 1070
Tth111I GACNNNGTC 1 cut(s) 287
VneI GTGCAC 1 cut(s) 989
VpaK11BI GGWCC 1 cut(s) 679
XapI RAATTY 3 cut(s) 242, 371, 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 645
XhoI CTCGAG 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 756
XmnI GAANNNNTTC 1 cut(s) 788
XspI CTAG 2 cut(s) 623, 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.