Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004935

Physical Location & Seq

Genomic Coordinates Reverse (-)

16562093 .. 16563376

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGTCAGTCAAAAGAACGCCAGAAAATGTACTGTTGGATTATAGGCTGCTCAGCCGCACAGCCAAATCCTCCATCTTCTCCACCGTCTCATTTGCCGCCATATTTTTTATCATCTATGCAGACAGCGTTATTTCCAACCTTTCCATGCAAAGAGTTGTCCCGAGCAATCATGAAATTCTTGACCATGATCACCAGACTCAAATTCCTGAAGAGCAAATCAAATCAACGTCACAGCTTCCGAATATGCAAGCAAATATTGATAACATTGAAGATGAAATTCATGATCGTTTGGTTCCTCCGGAAAATGCCTCACAAGAAGAAAGGCTAGGGTGGTTCCGGCGAAAACTGCCGGAGCTTGAGATACTACACTCTGACAACTTGACAAAGCAATTCCACGGTCGAGTGCTCGAGTTCCTTAACACTGGATGCAGCTCTAAGTTCTATATGATATGGCTTTCACCGGCAAAGTCATTTGGGAAAAGAGAGTTCTTGGCCTTGGACACCCTCTTCAAGTCCAACCCTCAAGGCTGCTTGGTGATCGTATCGAAATCCATGGATTCCGAAAGAGGGTACAGAATCCTGAAGCCACTGCTGGACAGAGGATTCAAAATACTAGCAATCACGCCGGACTTGCCCTTTTTGGTCAAGGACACGCCGTCTGAATCTTGGCTTGAGGAATTGAAGAGTGGGGGGAAGGACCCAGGTTACATCCCATTACCTCAAAACCTAGCAAATCTTATTAGGCTTGCAATGCTGTACAAGTATGGAGGCATATATTTGGACACTGACTTCGTAATATTGAAAAATTTTTCGGGGCTGAGGAATGCAGTTGGAGCACAAAGTATAGATAAGAACTCCAAACAATGGACTACACTAAATAATGCAGTGATGATTTTCGACGTAAACCATCCGATTCTCGTGAACTTTTTAGCCGAATTTGCTAAAACTTTTAATGGGAACAAATGGGGTCACAATGGACCTTACTTGGTTTCGAGGGTAATTGAGAGAGTTGGAAACACACCAGGTTACAACCTTACAATCTTGCCTCCCAAGGCATTTTATGCGGTGGACTGGGTTCGGATACACAGGCTTTTCAGGAAGCCTAAGAAACGATCAGAGTCAAGAGCGGCGAAAATCATTCTAAATGAGCTAAATGACGGGGAGACTTATGCCCTGCACTTGTGGAACAAGCGAAGCCGTAAGTTGGTTATTGAAGAGGGAAGTGTCATGGCTAGATTAATATCAGAGCATTGTGTCATTTGCCAGGACATATATACTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00601 ko00603 ko01100 map00601 map00603 map01100

Pfam Domains

Protein Families

Gb3_synth Gly_transf_sug

Protein Analysis

428

Amino Acids

48.81

Weight (kDa)

9.03

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gly_transf_sug	PF04488	161 - 280	3.3e-21	Glycosyltransferase sugar-binding region containing DXD motif
Gb3_synth	PF04572	299 - 422	1.4e-26	Alpha 1,4-glycosyltransferase conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38150
fragaria_vesca	FvH4_6g11740 FvH4_6g11750
prunus_persica	Prupe.2G284900_v2.0.a1 Prupe.6G274400_v2.0.a1
pyrus_communis	pycom04g13500
rosa_chinensis	RchiOBHm_Chr3g0463521 RchiOBHm_Chr3g0463531
rosa_laevigata	RLG00000019557 RLG00000024780 RLG00000024781
rosa_multiflora	Rmu_co8351885.1_g000001 Rmu_co8485291.1_g000001 Rmu_sc0000923.1_g000022 Rmu_sc0000923.1_g000023 Rmu_sc0003267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416480 Rroxscaffold_6G00416490
rosa_rugosa	Rorug03G0065400 Rorug03G0065700
rosa_samantha	Rh3AG122600 Rh3AG122700 Rh3BG127300 Rh3BG127400 Rh3CG129200 Rh3CG129300 Rh3DG128100 Rh3DG128200
rosa_wichuraiana	Rw0G010570 Rw0G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	864
AccBSI	CCGCTC	1 cut(s)	1127
AccIII	TCCGGA	1 cut(s)	298
AciI	CCGC	4 cut(s)	55, 96, 1064, 1127
AcsI	RAATTY	5 cut(s)	174, 201, 276, 805, 935
AcuI	CTGAAG	2 cut(s)	228, 602
AfaI	GTAC	3 cut(s)	30, 572, 758
AfiI	CCNNNNNNNGG	3 cut(s)	567, 864, 1204
AgsI	TTSAA	6 cut(s)	269, 511, 607, 682, 802, 1214
AhdI	GACNNNNNGTC	1 cut(s)	655
AjnI	CCWGG	3 cut(s)	700, 1021, 1263
AluBI	AGCT	4 cut(s)	235, 355, 432, 1150
AluI	AGCT	4 cut(s)	235, 355, 432, 1150
Alw21I	GWGCWC	2 cut(s)	408, 838
Alw26I	GTCTC	2 cut(s)	91, 1157
Ama87I	CYCGRG	2 cut(s)	160, 407
Aor13HI	TCCGGA	1 cut(s)	298
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	3 cut(s)	46, 429, 528
ApoI	RAATTY	5 cut(s)	174, 201, 276, 805, 935
ArsI	GACNNNNNNTTYG	2 cut(s)	773, 805
AseI	ATTAAT	1 cut(s)	1238
AspS9I	GGNCC	2 cut(s)	697, 977
AsuHPI	GGTGA	3 cut(s)	182, 450, 547
AvaI	CYCGRG	2 cut(s)	160, 407
AvaII	GGWCC	2 cut(s)	697, 977
BauI	CACGAG	1 cut(s)	917
Bbv12I	GWGCWC	2 cut(s)	408, 838
BbvCI	CCTCAGC	1 cut(s)	818
BbvI	GCAGC	3 cut(s)	33, 441, 515
BccI	CCATC	2 cut(s)	80, 915
BceAI	ACGGC	2 cut(s)	640, 1182
BciT130I	CCWGG	3 cut(s)	702, 1023, 1265
BciVI	GTATCC	1 cut(s)	1074
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	2 cut(s)	91, 1157
BfaI	CTAG	4 cut(s)	326, 614, 728, 1233
BfuI	GTATCC	1 cut(s)	1074
BisI	GCNGC	6 cut(s)	47, 55, 96, 430, 529, 1128
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	6 cut(s)	48, 56, 97, 431, 530, 1129
Bme1390I	CCNGG	3 cut(s)	702, 1023, 1265
Bme18I	GGWCC	2 cut(s)	697, 977
BmeRI	GACNNNNNGTC	1 cut(s)	655
BmeT110I	CYCGRG	2 cut(s)	160, 407
BmgT120I	GGNCC	2 cut(s)	697, 977
BmiI	GGNNCC	3 cut(s)	294, 335, 699
BmrFI	CCNGG	3 cut(s)	702, 1023, 1265
BmrI	ACTGGG	1 cut(s)	1081
BmsI	GCATC	1 cut(s)	416
BmuI	ACTGGG	1 cut(s)	1081
Bpu10I	CCTNAGC	1 cut(s)	818
Bpu1102I	GCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	3 cut(s)	377, 507, 692
BsaBI	GATNNNNATC	1 cut(s)	1240
BsaJI	CCNNGG	5 cut(s)	394, 495, 552, 700, 1050
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	3 cut(s)	567, 864, 1204
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	2 cut(s)	427, 1076
Bse3DI	GCAATG	1 cut(s)	756
Bse8I	GATNNNNATC	1 cut(s)	1240
BseAI	TCCGGA	1 cut(s)	298
BseBI	CCWGG	3 cut(s)	702, 1023, 1265
BseDI	CCNNGG	5 cut(s)	394, 495, 552, 700, 1050
BseGI	GGATG	3 cut(s)	431, 708, 907
BseJI	GATNNNNATC	1 cut(s)	1240
BseLI	CCNNNNNNNGG	3 cut(s)	567, 864, 1204
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	2 cut(s)	64, 809
BseNI	ACTGG	2 cut(s)	427, 1076
BseXI	GCAGC	3 cut(s)	33, 441, 515
BsgI	GTGCAG	1 cut(s)	1160
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	1 cut(s)	494
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	2 cut(s)	408, 838
BsiHKCI	CYCGRG	2 cut(s)	160, 407
BsiSI	CCGG	5 cut(s)	299, 337, 350, 461, 626
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	3 cut(s)	567, 864, 1204
BsmAI	GTCTC	2 cut(s)	91, 1157
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	829
BsnI	GGCC	1 cut(s)	494
BsoBI	CYCGRG	2 cut(s)	160, 407
Bsp1286I	GDGCHC	2 cut(s)	408, 838
Bsp13I	TCCGGA	1 cut(s)	298
Bsp1407I	TGTACA	1 cut(s)	756
Bsp143I	GATC	4 cut(s)	187, 283, 537, 1112
Bsp1720I	GCTNAGC	1 cut(s)	50
Bsp19I	CCATGG	1 cut(s)	552
BspACI	CCGC	4 cut(s)	55, 96, 1064, 1127
BspANI	GGCC	1 cut(s)	494
BspCNI	CTCAG	2 cut(s)	63, 810
BspEI	TCCGGA	1 cut(s)	298
BspHI	TCATGA	2 cut(s)	169, 280
BspLI	GGNNCC	3 cut(s)	294, 335, 699
BspQI	GCTCTTC	1 cut(s)	204
BsrBI	CCGCTC	1 cut(s)	1127
BsrDI	GCAATG	1 cut(s)	756
BsrFI	RCCGGY	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	756
BsrI	ACTGG	2 cut(s)	427, 1076
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	5 cut(s)	394, 495, 552, 700, 1050
BssMI	GATC	4 cut(s)	187, 283, 537, 1112
BssSI	CACGAG	1 cut(s)	917
BssT1I	CCWWGG	3 cut(s)	495, 552, 1050
Bst2BI	CACGAG	1 cut(s)	917
Bst2UI	CCWGG	3 cut(s)	702, 1023, 1265
Bst4CI	ACNGT	3 cut(s)	33, 85, 398
Bst6I	CTCTTC	4 cut(s)	204, 512, 677, 1209
BstAPI	GCANNNNNTGC	1 cut(s)	1061
BstAUI	TGTACA	1 cut(s)	756
BstC8I	GCNNGC	2 cut(s)	249, 747
BstDEI	CTNAG	4 cut(s)	50, 435, 818, 1104
BstDSI	CCRYGG	2 cut(s)	394, 552
BstF5I	GGATG	3 cut(s)	431, 708, 907
BstKTI	GATC	4 cut(s)	190, 286, 540, 1115
BstMAI	GTCTC	2 cut(s)	91, 1157
BstMBI	GATC	4 cut(s)	187, 283, 537, 1112
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	6 cut(s)	346, 631, 751, 833, 938, 1061
BstNI	CCWGG	3 cut(s)	702, 1023, 1265
BstSCI	CCNGG	3 cut(s)	700, 1021, 1263
BstV1I	GCAGC	3 cut(s)	33, 441, 515
BsuI	GTATCC	1 cut(s)	1074
BsuRI	GGCC	1 cut(s)	494
BtgI	CCRYGG	2 cut(s)	394, 552
BtsCI	GGATG	3 cut(s)	431, 708, 907
BtsI	GCAGTG	2 cut(s)	587, 891
BtsIMutI	CAGTG	4 cut(s)	420, 587, 783, 891
Cac8I	GCNNGC	2 cut(s)	249, 747
CciI	TCATGA	2 cut(s)	169, 280
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	2 cut(s)	697, 977
CsiI	ACCWGGT	1 cut(s)	1021
Csp6I	GTAC	3 cut(s)	29, 571, 757
CviAII	CATG	6 cut(s)	145, 170, 185, 281, 553, 1228
CviQI	GTAC	3 cut(s)	29, 571, 757
DdeI	CTNAG	4 cut(s)	50, 435, 818, 1104
DpnI	GATC	4 cut(s)	189, 285, 539, 1114
DpnII	GATC	4 cut(s)	187, 283, 537, 1112
DriI	GACNNNNNGTC	1 cut(s)	655
Eam1104I	CTCTTC	4 cut(s)	204, 512, 677, 1209
Eam1105I	GACNNNNNGTC	1 cut(s)	655
EarI	CTCTTC	4 cut(s)	204, 512, 677, 1209
Eco130I	CCWWGG	3 cut(s)	495, 552, 1050
Eco47I	GGWCC	2 cut(s)	697, 977
Eco57I	CTGAAG	2 cut(s)	228, 602
Eco88I	CYCGRG	2 cut(s)	160, 407
EcoO109I	RGGNCCY	1 cut(s)	697
EcoRII	CCWGG	3 cut(s)	700, 1021, 1263
EcoT14I	CCWWGG	3 cut(s)	495, 552, 1050
ErhI	CCWWGG	3 cut(s)	495, 552, 1050
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	6 cut(s)	148, 173, 188, 284, 556, 1231
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	6 cut(s)	144, 169, 184, 280, 552, 1227
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	6 cut(s)	47, 55, 96, 430, 529, 1128
FokI	GGATG	3 cut(s)	438, 695, 894
Fsp4HI	GCNGC	6 cut(s)	47, 55, 96, 430, 529, 1128
FspBI	CTAG	4 cut(s)	326, 614, 728, 1233
GluI	GCNGC	6 cut(s)	47, 55, 96, 430, 529, 1128
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	5 cut(s)	299, 337, 350, 461, 626
Hin1II	CATG	6 cut(s)	148, 173, 188, 284, 556, 1231
HinfI	GANTC	7 cut(s)	196, 557, 576, 603, 662, 913, 1118
HpaII	CCGG	5 cut(s)	299, 337, 350, 461, 626
HphI	GGTGA	3 cut(s)	182, 450, 547
Hpy166II	GTNNAC	3 cut(s)	904, 922, 1069
Hpy188I	TCNGA	8 cut(s)	240, 373, 562, 661, 912, 1080, 1117, 1246
Hpy8I	GTNNAC	3 cut(s)	904, 922, 1069
Hpy99I	CGWCG	1 cut(s)	902
HpyAV	CCTTC	1 cut(s)	688
HpyCH4III	ACNGT	3 cut(s)	33, 85, 398
HpyCH4IV	ACGT	2 cut(s)	227, 900
HpyCH4V	TGCA	8 cut(s)	119, 148, 247, 429, 749, 827, 884, 1177
HpyF10VI	GCNNNNNNNGC	6 cut(s)	346, 631, 751, 833, 938, 1061
HpyF3I	CTNAG	4 cut(s)	50, 435, 818, 1104
HpySE526I	ACGT	2 cut(s)	227, 900
Hsp92II	CATG	6 cut(s)	148, 173, 188, 284, 556, 1231
Kpn2I	TCCGGA	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	187, 283, 537, 1112
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	2 cut(s)	352, 833
Lsp1109I	GCAGC	3 cut(s)	33, 441, 515
LweI	GCATC	1 cut(s)	416
MabI	ACCWGGT	1 cut(s)	1021
MaeI	CTAG	4 cut(s)	326, 614, 728, 1233
MaeII	ACGT	2 cut(s)	227, 900
MaeIII	GTNAC	4 cut(s)	228, 704, 968, 1025
MalI	GATC	4 cut(s)	189, 285, 539, 1114
MbiI	CCGCTC	1 cut(s)	1127
MboI	GATC	4 cut(s)	187, 283, 537, 1112
MboII	GAAGA	7 cut(s)	67, 221, 281, 329, 499, 694, 1226
MhlI	GDGCHC	2 cut(s)	408, 838
MluCI	AATT	8 cut(s)	174, 201, 276, 389, 677, 805, 935, 999
MlyI	GAGTC	2 cut(s)	190, 1127
MmeI	TCCRAC	5 cut(s)	15, 159, 540, 811, 991
MroI	TCCGGA	1 cut(s)	298
MseI	TTAA	3 cut(s)	417, 951, 1238
MspI	CCGG	5 cut(s)	299, 337, 350, 461, 626
MspR9I	CCNGG	3 cut(s)	702, 1023, 1265
Mva1269I	GAATGC	1 cut(s)	829
MvaI	CCWGG	3 cut(s)	702, 1023, 1265
MwoI	GCNNNNNNNGC	6 cut(s)	346, 631, 751, 833, 938, 1061
NcoI	CCATGG	1 cut(s)	552
NdeII	GATC	4 cut(s)	187, 283, 537, 1112
NlaIII	CATG	6 cut(s)	148, 173, 188, 284, 556, 1231
NlaIV	GGNNCC	3 cut(s)	294, 335, 699
NmuCI	GTSAC	2 cut(s)	228, 968
PaeR7I	CTCGAG	1 cut(s)	407
PagI	TCATGA	2 cut(s)	169, 280
PciSI	GCTCTTC	1 cut(s)	204
PctI	GAATGC	1 cut(s)	829
PfeI	GAWTC	5 cut(s)	557, 576, 603, 662, 913
PflMI	CCANNNNNTGG	1 cut(s)	864
PkrI	GCNGC	6 cut(s)	48, 56, 97, 431, 530, 1129
PleI	GAGTC	2 cut(s)	190, 1126
PpsI	GAGTC	2 cut(s)	190, 1126
PpuMI	RGGWCCY	1 cut(s)	697
PshBI	ATTAAT	1 cut(s)	1238
Psp5II	RGGWCCY	1 cut(s)	697
Psp6I	CCWGG	3 cut(s)	700, 1021, 1263
PspGI	CCWGG	3 cut(s)	700, 1021, 1263
PspN4I	GGNNCC	3 cut(s)	294, 335, 699
PspPI	GGNCC	2 cut(s)	697, 977
PspPPI	RGGWCCY	1 cut(s)	697
PspXI	VCTCGAGB	1 cut(s)	407
RsaI	GTAC	3 cut(s)	30, 572, 758
RsaNI	GTAC	3 cut(s)	29, 571, 757
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	417, 951, 1238
SatI	GCNGC	6 cut(s)	47, 55, 96, 430, 529, 1128
Sau3AI	GATC	4 cut(s)	187, 283, 537, 1112
Sau96I	GGNCC	2 cut(s)	697, 977
SchI	GAGTC	2 cut(s)	190, 1127
ScrFI	CCNGG	3 cut(s)	702, 1023, 1265
SduI	GDGCHC	2 cut(s)	408, 838
SexAI	ACCWGGT	1 cut(s)	1021
SfaNI	GCATC	1 cut(s)	416
Sfr274I	CTCGAG	1 cut(s)	407
SinI	GGWCC	2 cut(s)	697, 977
SlaI	CTCGAG	1 cut(s)	407
SmlI	CTYRAG	4 cut(s)	356, 407, 522, 671
SmoI	CTYRAG	4 cut(s)	356, 407, 522, 671
Sse9I	AATT	8 cut(s)	174, 201, 276, 389, 677, 805, 935, 999
SsiI	CCGC	4 cut(s)	55, 96, 1064, 1127
SspI	AATATT	2 cut(s)	256, 798
SspMI	CTAG	4 cut(s)	326, 614, 728, 1233
StyD4I	CCNGG	3 cut(s)	700, 1021, 1263
StyI	CCWWGG	3 cut(s)	495, 552, 1050
TaaI	ACNGT	3 cut(s)	33, 85, 398
TaiI	ACGT	2 cut(s)	230, 903
TaqI	TCGA	5 cut(s)	400, 408, 545, 897, 992
TasI	AATT	8 cut(s)	174, 201, 276, 389, 677, 805, 935, 999
TatI	WGTACW	2 cut(s)	28, 756
TauI	GCSGC	3 cut(s)	57, 98, 1130
TfiI	GAWTC	5 cut(s)	557, 576, 603, 662, 913
Tru1I	TTAA	3 cut(s)	417, 951, 1238
Tru9I	TTAA	3 cut(s)	417, 951, 1238
TscAI	CASTG	4 cut(s)	427, 594, 790, 891
TseFI	GTSAC	2 cut(s)	228, 968
TseI	GCWGC	3 cut(s)	46, 429, 528
Tsp45I	GTSAC	2 cut(s)	228, 968
TspDTI	ATGAA	3 cut(s)	186, 269, 288
TspRI	CASTG	4 cut(s)	427, 594, 790, 891
Van91I	CCANNNNNTGG	1 cut(s)	864
VpaK11BI	GGWCC	2 cut(s)	697, 977
VspI	ATTAAT	1 cut(s)	1238
XapI	RAATTY	5 cut(s)	174, 201, 276, 805, 935
XhoI	CTCGAG	1 cut(s)	407
XspI	CTAG	4 cut(s)	326, 614, 728, 1233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.