Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8351885.1

Orthogroup ID

OG0004935

Physical Location & Seq

Genomic Coordinates Reverse (-)

77 .. 865

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8351885.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atggacaccctcttcaaatctcaccctaaaggctgcttgatgatcatctctaaatccatggattcaggactgggatacagaatcctgaagccacttctggatcgagaattcaaaatcctcgcgatcacgccagacttaccatttctagtgaagaacacaccagctgagtcttggcttgatgaaatgaagagtgggagaagggacccaggtcacattccattgtctcaaaacctatcaaatcttattaggctggcaattctgtacaaatacggaggtgtatacttagacacggacttcataattctgaaggacttctctggtttgaggaatgcagttggggcacaaagtatagactcggagtccaaaaactggactagactaaatggtgcagtgatgatctttgacatacagcatccacttttgagagacttcttgtatgaatttgcttcaacttttaatggaaacagatggggtcacaatggaccatacttggtgtcaagggtgattaagaaagtgggaagtacacctggttataaccttacggttttgcctccggaggcattttatccggtggactggaataggatttggaggctttataggaagccaaagaaggatttggaatcaagatgggtggaaaggatattgaatgagttgaatgaaggggagacttatgccgtgcacctgtggaacaagcgaagtagagcattggccattgaggagggaagtgtcatggctagactaatctcagagcactgtgtcatctgccaggacatttatagttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00601 ko00603 ko01100 map00601 map00603 map01100

Pfam Domains

Protein Families

Gb3_synth Gly_transf_sug

Protein Analysis

262

Amino Acids

30.11

Weight (kDa)

9.01

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38150
fragaria_vesca	FvH4_6g11740 FvH4_6g11750
prunus_persica	Prupe.2G284900_v2.0.a1 Prupe.6G274400_v2.0.a1
pyrus_communis	pycom04g13500
rosa_chinensis	RchiOBHm_Chr3g0463521 RchiOBHm_Chr3g0463531
rosa_laevigata	RLG00000019557 RLG00000024780 RLG00000024781
rosa_multiflora	Rmu_co8351885.1_g000001 Rmu_co8485291.1_g000001 Rmu_sc0000923.1_g000022 Rmu_sc0000923.1_g000023 Rmu_sc0003267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416480 Rroxscaffold_6G00416490
rosa_rugosa	Rorug03G0065400 Rorug03G0065700
rosa_samantha	Rh3AG122600 Rh3AG122700 Rh3BG127300 Rh3BG127400 Rh3CG129200 Rh3CG129300 Rh3DG128100 Rh3DG128200
rosa_wichuraiana	Rw0G010570 Rw0G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	534
AccB7I	CCANNNNNTGG	1 cut(s)	369
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	1 cut(s)	122
AccIII	TCCGGA	1 cut(s)	553
AclWI	GGATC	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	711
AcsI	RAATTY	2 cut(s)	107, 440
AcuI	CTGAAG	2 cut(s)	107, 326
AfaI	GTAC	2 cut(s)	263, 523
AfiI	CCNNNNNNNGG	1 cut(s)	369
AgsI	TTSAA	5 cut(s)	16, 112, 450, 649, 658
AhdI	GACNNNNNGTC	1 cut(s)	358
AjnI	CCWGG	3 cut(s)	205, 526, 768
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw21I	GWGCWC	2 cut(s)	684, 756
Alw26I	GTCTC	3 cut(s)	228, 420, 662
Alw44I	GTGCAC	1 cut(s)	680
AlwI	GGATC	1 cut(s)	108
Aor13HI	TCCGGA	1 cut(s)	553
AoxI	GGCC	1 cut(s)	711
ApaLI	GTGCAC	1 cut(s)	680
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	2 cut(s)	107, 440
Asp700I	GAANNNNTTC	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	202, 482
AsuHPI	GGTGA	2 cut(s)	14, 514
AvaII	GGWCC	2 cut(s)	202, 482
BaeGI	GKGCMC	2 cut(s)	343, 684
BalI	TGGCCA	1 cut(s)	713
Bbv12I	GWGCWC	2 cut(s)	684, 756
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	2 cut(s)	462, 624
BceAI	ACGGC	1 cut(s)	662
BciT130I	CCWGG	3 cut(s)	207, 528, 770
BciVI	GTATCC	1 cut(s)	68
BclI	TGATCA	1 cut(s)	42
BcoDI	GTCTC	3 cut(s)	228, 420, 662
BfaI	CTAG	3 cut(s)	146, 375, 738
BfuI	GTATCC	1 cut(s)	68
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
Bme1390I	CCNGG	3 cut(s)	207, 528, 770
Bme18I	GGWCC	2 cut(s)	202, 482
BmeRI	GACNNNNNGTC	1 cut(s)	358
BmgT120I	GGNCC	2 cut(s)	202, 482
BmiI	GGNNCC	2 cut(s)	203, 204
BmrFI	CCNGG	3 cut(s)	207, 528, 770
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	421
BmuI	ACTGGG	1 cut(s)	80
BoxI	GACNNNNGTC	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	57, 205
BsaWI	WCCGGW	2 cut(s)	553, 568
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse1I	ACTGG	3 cut(s)	75, 374, 581
Bse8I	GATNNNNATC	1 cut(s)	44
BseAI	TCCGGA	1 cut(s)	553
BseBI	CCWGG	3 cut(s)	207, 528, 770
BseDI	CCNNGG	2 cut(s)	57, 205
BseGI	GGATG	1 cut(s)	412
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMII	CTCAG	2 cut(s)	156, 762
BseNI	ACTGG	3 cut(s)	75, 374, 581
BseRI	GAGGAG	1 cut(s)	734
BseSI	GKGCMC	2 cut(s)	343, 684
BseXI	GCAGC	1 cut(s)	20
BsgI	GTGCAG	1 cut(s)	408
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	713
BsiHKAI	GWGCWC	2 cut(s)	684, 756
BsiSI	CCGG	2 cut(s)	554, 569
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmAI	GTCTC	3 cut(s)	228, 420, 662
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	713
Bsp1286I	GDGCHC	3 cut(s)	343, 684, 756
Bsp13I	TCCGGA	1 cut(s)	553
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	4 cut(s)	42, 100, 123, 396
Bsp19I	CCATGG	1 cut(s)	57
Bsp68I	TCGCGA	1 cut(s)	122
BspANI	GGCC	1 cut(s)	713
BspCNI	CTCAG	2 cut(s)	157, 761
BspEI	TCCGGA	1 cut(s)	553
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	2 cut(s)	203, 204
BspPI	GGATC	1 cut(s)	108
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	3 cut(s)	75, 374, 581
BssECI	CCNNGG	2 cut(s)	57, 205
BssMI	GATC	4 cut(s)	42, 100, 123, 396
BssNAI	GTATAC	1 cut(s)	280
BssT1I	CCWWGG	1 cut(s)	57
Bst1107I	GTATAC	1 cut(s)	280
Bst2UI	CCWGG	3 cut(s)	207, 528, 770
Bst4CI	ACNGT	2 cut(s)	544, 758
Bst6I	CTCTTC	2 cut(s)	17, 182
BstAUI	TGTACA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	3 cut(s)	165, 283, 748
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	412
BstFNI	CGCG	1 cut(s)	122
BstKTI	GATC	4 cut(s)	45, 103, 126, 399
BstMAI	GTCTC	3 cut(s)	228, 420, 662
BstMBI	GATC	4 cut(s)	42, 100, 123, 396
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	3 cut(s)	207, 528, 770
BstPAI	GACNNNNGTC	1 cut(s)	207
BstSCI	CCNGG	3 cut(s)	205, 526, 768
BstSLI	GKGCMC	2 cut(s)	343, 684
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	20
BstZ17I	GTATAC	1 cut(s)	280
BsuI	GTATCC	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	713
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	412
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	396, 754
BtuMI	TCGCGA	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	252
Cfr13I	GGNCC	2 cut(s)	202, 482
CsiI	ACCWGGT	1 cut(s)	526
Csp6I	GTAC	2 cut(s)	262, 522
CspCI	CAANNNNNGTGG	2 cut(s)	615, 650
CviAII	CATG	2 cut(s)	58, 733
CviJI	RGCY	9 cut(s)	33, 91, 164, 175, 250, 595, 607, 713, 737
CviKI_1	RGCY	9 cut(s)	33, 91, 164, 175, 250, 595, 607, 713, 737
CviQI	GTAC	2 cut(s)	262, 522
DdeI	CTNAG	3 cut(s)	165, 283, 748
DpnI	GATC	4 cut(s)	44, 102, 125, 398
DpnII	GATC	4 cut(s)	42, 100, 123, 396
DriI	GACNNNNNGTC	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	711
Eam1104I	CTCTTC	2 cut(s)	17, 182
Eam1105I	GACNNNNNGTC	1 cut(s)	358
EarI	CTCTTC	2 cut(s)	17, 182
Eco130I	CCWWGG	1 cut(s)	57
Eco47I	GGWCC	2 cut(s)	202, 482
Eco57I	CTGAAG	2 cut(s)	107, 326
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	3 cut(s)	205, 526, 768
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	2 cut(s)	61, 736
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	2 cut(s)	57, 732
FbaI	TGATCA	1 cut(s)	42
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	34
FokI	GGATG	1 cut(s)	399
Fsp4HI	GCNGC	1 cut(s)	34
FspBI	CTAG	3 cut(s)	146, 375, 738
GluI	GCNGC	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	713
HapII	CCGG	2 cut(s)	554, 569
Hin1II	CATG	2 cut(s)	61, 736
HinfI	GANTC	6 cut(s)	62, 81, 167, 353, 359, 623
HpaII	CCGG	2 cut(s)	554, 569
HphI	GGTGA	2 cut(s)	14, 514
Hpy166II	GTNNAC	4 cut(s)	280, 524, 574, 682
Hpy188I	TCNGA	3 cut(s)	306, 358, 751
Hpy188III	TCNNGA	7 cut(s)	66, 85, 98, 104, 121, 554, 627
Hpy8I	GTNNAC	4 cut(s)	280, 524, 574, 682
HpyAV	CCTTC	4 cut(s)	192, 301, 607, 656
HpyCH4III	ACNGT	2 cut(s)	544, 758
HpyCH4V	TGCA	3 cut(s)	332, 389, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	3 cut(s)	165, 283, 748
Hsp92II	CATG	2 cut(s)	61, 736
KflI	GGGWCCC	1 cut(s)	202
Kpn2I	TCCGGA	1 cut(s)	553
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	4 cut(s)	42, 100, 123, 396
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	1 cut(s)	421
MabI	ACCWGGT	1 cut(s)	526
MaeI	CTAG	3 cut(s)	146, 375, 738
MaeIII	GTNAC	2 cut(s)	209, 473
MalI	GATC	4 cut(s)	44, 102, 125, 398
MboI	GATC	4 cut(s)	42, 100, 123, 396
MboII	GAAGA	3 cut(s)	4, 163, 199
MhlI	GDGCHC	3 cut(s)	343, 684, 756
MlsI	TGGCCA	1 cut(s)	713
MluCI	AATT	4 cut(s)	107, 255, 300, 440
MluNI	TGGCCA	1 cut(s)	713
MlyI	GAGTC	3 cut(s)	176, 347, 368
MnlI	CCTC	9 cut(s)	20, 128, 266, 318, 550, 561, 585, 712, 715
Mox20I	TGGCCA	1 cut(s)	713
MroI	TCCGGA	1 cut(s)	553
MroXI	GAANNNNTTC	1 cut(s)	311
MscI	TGGCCA	1 cut(s)	713
MseI	TTAA	3 cut(s)	456, 507, 787
Msp20I	TGGCCA	1 cut(s)	713
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	2 cut(s)	554, 569
MspR9I	CCNGG	3 cut(s)	207, 528, 770
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	3 cut(s)	207, 528, 770
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	338
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	4 cut(s)	42, 100, 123, 396
NlaIII	CATG	2 cut(s)	61, 736
NlaIV	GGNNCC	2 cut(s)	203, 204
NmuCI	GTSAC	2 cut(s)	209, 473
NruI	TCGCGA	1 cut(s)	122
PctI	GAATGC	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	62, 81, 623
PflMI	CCANNNNNTGG	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	35
PleI	GAGTC	3 cut(s)	175, 347, 367
PpsI	GAGTC	3 cut(s)	175, 347, 367
PpuMI	RGGWCCY	1 cut(s)	202
PshAI	GACNNNNGTC	1 cut(s)	207
PsiI	TTATAA	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	3 cut(s)	205, 526, 768
PspGI	CCWGG	3 cut(s)	205, 526, 768
PspN4I	GGNNCC	2 cut(s)	203, 204
PspPI	GGNCC	2 cut(s)	202, 482
PspPPI	RGGWCCY	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	164
RruI	TCGCGA	1 cut(s)	122
RsaI	GTAC	2 cut(s)	263, 523
RsaNI	GTAC	2 cut(s)	262, 522
SaqAI	TTAA	3 cut(s)	456, 507, 787
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	4 cut(s)	42, 100, 123, 396
Sau96I	GGNCC	2 cut(s)	202, 482
SchI	GAGTC	3 cut(s)	176, 347, 368
ScrFI	CCNGG	3 cut(s)	207, 528, 770
SduI	GDGCHC	3 cut(s)	343, 684, 756
SetI	ASST	7 cut(s)	166, 211, 234, 277, 529, 540, 687
SexAI	ACCWGGT	1 cut(s)	526
SfaNI	GCATC	1 cut(s)	421
SinI	GGWCC	2 cut(s)	202, 482
Sse9I	AATT	4 cut(s)	107, 255, 300, 440
SspMI	CTAG	3 cut(s)	146, 375, 738
StyD4I	CCNGG	3 cut(s)	205, 526, 768
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	544, 758
TaqI	TCGA	1 cut(s)	103
TasI	AATT	4 cut(s)	107, 255, 300, 440
TatI	WGTACW	2 cut(s)	261, 521
TfiI	GAWTC	3 cut(s)	62, 81, 623
Tru1I	TTAA	3 cut(s)	456, 507, 787
Tru9I	TTAA	3 cut(s)	456, 507, 787
TscAI	CASTG	2 cut(s)	396, 761
TseFI	GTSAC	2 cut(s)	209, 473
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	2 cut(s)	209, 473
TspDTI	ATGAA	5 cut(s)	195, 200, 286, 453, 675
TspGWI	ACGGA	2 cut(s)	285, 305
TspRI	CASTG	2 cut(s)	396, 761
Van91I	CCANNNNNTGG	1 cut(s)	369
VneI	GTGCAC	1 cut(s)	680
VpaK11BI	GGWCC	2 cut(s)	202, 482
XapI	RAATTY	2 cut(s)	107, 440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	311
XspI	CTAG	3 cut(s)	146, 375, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.