Rh3DG128100

Glycosyltransferase sugar-binding region containing DXD motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004935
Physical Location & Seq
Forward (+)
10891736 .. 10894375
2640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG128100.1

Sequence Viewer

Length: 1296 bp
ATGTCTCCAAAAAAATCCTCACCCCACTCCACTCTCTTAAAAATGAAAAGAACATCGCAAAAACTGTTTCATTATAACCTATTTAGACGCACTGCCAAAACTTCTATTTTCTCCACCATTTCATTTGCTGCCATATTCTTTCTCCTATATTCATCAGACACCATAGTCTCGATCTCTAAGCTCCCCATGCATCCGGTTGACCTCAAAAGTCATAAAATTGTTGACCATCGCCAGGAACCAACCTTGATTACTACTACTAATGTCCAAGAAGAGATCAGCATTGATGAAGGTCCAGATGAAGTTTACGACCCTCTAATCCCTCCCGATAATGTAACAAAAGAAGAAAGACAAGTGTGGTTCAGGCGGAAGCTTCCAGAGCTGGAGATACTCCGGTCCAATAGCTTGACGCAGCAATTCCACAGTCGAGTTCTCCAGTTTCTCAACAACGGATGCAGCATTCAATTCTACATGATATGGTTTTCACCAGCGAAGTCATTCGGAAAAAGAGAATTCTTCGCCATGGACAGCCTCTTCAAAGCTCATCCTCAAGGATGTTTGATGCTATTATCGAAAAGCATGGATTCGGGACGCGGATACCGAATCCTGAAACCATTACTTGATGGAGGATTCAAAATACTCGCGGTGACTCCAGACTTGCCATTTCTAGTCAAAAACACTCCAGGTGAAATTTGGCTTGGCGAAATGAAGAGTGGGAGGAGAGACCCAGGTTACATCCCATTGTCCCAAAACCTAGCCAATCTGATCAGACTTGCTGTGCTTTACAAGTATGGAGGTGTATACTTAGACACAGACTTCATAACTCTGAAGGATTTCTCGGGGTTGAGGAATGCAATTGGAGCACAAAACGTAGATTTAGAGTCCAAAAACTGGACCATACTAAACAATGCAGTCATGATCTTCGACATAAACCATCCGCTTCTACTAGACTTCATGGGAGAATTTGCTTCAACATTTAATGGAAACAAATGGGGTCACAACGGACCTTACTTGGTCTCCAGGGTAACTGAGAAAATGGGGCGCACACCGGGTTACAACCTTACAATTTTGCCTCCCGAGGCGTTTTATCCGGTGGAATGGAATAAAATTCGGAGGATTTTCCGGAAGCCTCAGAAGGAATCGGAGTCGAGATGGGTGGAAAGCATGTTGAATGAGTTGAATGAAGGGGAGACTTATGCTCTACACCTATGGAACAAGAGAAGTAGAGAATTGACCATTGAAGAGGGAAGTGTCATGGCTAGACTAATATCGGCGCATTGTGTTATTTGCCGGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00601 ko00603 ko01100 map00601 map00603 map01100
Pfam Domains
Protein Families
Gb3_synth Gly_transf_sug

Protein Analysis

431

Amino Acids

49.55

Weight (kDa)

9.26

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly_transf_sug PF04488 169 - 289 1.6e-21 Glycosyltransferase sugar-binding region containing DXD motif
Gb3_synth PF04572 307 - 429 4e-27 Alpha 1,4-glycosyltransferase conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 75
AasI GACNNNNNNGTC 1 cut(s) 164
AccB7I CCANNNNNTGG 1 cut(s) 888
AccI GTMKAC 1 cut(s) 798
AccII CGCG 2 cut(s) 591, 641
AccIII TCCGGA 1 cut(s) 1119
AciI CCGC 4 cut(s) 364, 591, 641, 935
AcsI RAATTY 4 cut(s) 509, 687, 959, 1104
AcuI CTGAAG 1 cut(s) 845
AfiI CCNNNNNNNGG 2 cut(s) 232, 888
AgsI TTSAA 7 cut(s) 461, 535, 631, 969, 1168, 1177, 1238
AjnI CCWGG 4 cut(s) 231, 679, 724, 1016
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
AluBI AGCT 5 cut(s) 181, 370, 379, 402, 539
AluI AGCT 5 cut(s) 181, 370, 379, 402, 539
Alw21I GWGCWC 1 cut(s) 862
Alw26I GTCTC 5 cut(s) 9, 172, 714, 1018, 1181
Ama87I CYCGRG 2 cut(s) 835, 1073
Aor13HI TCCGGA 1 cut(s) 1119
ApeKI GCWGC 3 cut(s) 128, 409, 453
ApoI RAATTY 4 cut(s) 509, 687, 959, 1104
Asp700I GAANNNNTTC 2 cut(s) 494, 830
AspLEI GCGC 2 cut(s) 1041, 1273
AspS9I GGNCC 4 cut(s) 290, 393, 891, 1001
AsuC2I CCSGG 1 cut(s) 1047
AsuHPI GGTGA 4 cut(s) 12, 474, 655, 695
AvaI CYCGRG 2 cut(s) 835, 1073
AvaII GGWCC 4 cut(s) 290, 393, 891, 1001
BaeI ACNNNNGTAYC 2 cut(s) 377, 410
Bbv12I GWGCWC 1 cut(s) 862
BbvI GCAGC 3 cut(s) 115, 421, 465
BccI CCATC 4 cut(s) 234, 614, 939, 1143
BciT130I CCWGG 4 cut(s) 233, 681, 726, 1018
BciVI GTATCC 1 cut(s) 587
BclI TGATCA 1 cut(s) 762
BcnI CCSGG 1 cut(s) 1047
BcoDI GTCTC 5 cut(s) 9, 172, 714, 1018, 1181
BfaI CTAG 4 cut(s) 665, 752, 944, 1257
BfuI GTATCC 1 cut(s) 587
BisI GCNGC 3 cut(s) 129, 410, 454
BlsI GCNGC 3 cut(s) 130, 411, 455
Bme1390I CCNGG 5 cut(s) 233, 681, 726, 1018, 1047
Bme18I GGWCC 4 cut(s) 290, 393, 891, 1001
BmeT110I CYCGRG 2 cut(s) 835, 1073
BmgT120I GGNCC 4 cut(s) 290, 393, 891, 1001
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 5 cut(s) 233, 681, 726, 1018, 1047
BmsI GCATC 3 cut(s) 199, 440, 549
BpmI CTGGAG 5 cut(s) 401, 416, 633, 663, 1000
BpuEI CTTGAG 1 cut(s) 531
BpuMI CCSGG 1 cut(s) 1047
BsaI GGTCTC 2 cut(s) 714, 1018
BsaJI CCNNGG 4 cut(s) 519, 724, 1017, 1074
BsaWI WCCGGW 4 cut(s) 193, 390, 1087, 1119
BsaXI ACNNNNNCTCC 2 cut(s) 998, 1028
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 888
Bse1I ACTGG 2 cut(s) 433, 893
BseAI TCCGGA 1 cut(s) 1119
BseBI CCWGG 4 cut(s) 233, 681, 726, 1018
BseDI CCNNGG 4 cut(s) 519, 724, 1017, 1074
BseGI GGATG 6 cut(s) 190, 455, 541, 557, 732, 931
BseLI CCNNNNNNNGG 2 cut(s) 232, 888
BseMII CTCAG 2 cut(s) 1017, 1142
BseNI ACTGG 2 cut(s) 433, 893
BseRI GAGGAG 1 cut(s) 730
BseXI GCAGC 3 cut(s) 115, 421, 465
Bsh1236I CGCG 2 cut(s) 591, 641
BsiHKAI GWGCWC 1 cut(s) 862
BsiHKCI CYCGRG 2 cut(s) 835, 1073
BsiSI CCGG 6 cut(s) 194, 391, 1046, 1088, 1120, 1288
BslFI GGGAC 2 cut(s) 600, 727
BslI CCNNNNNNNGG 2 cut(s) 232, 888
BsmAI GTCTC 5 cut(s) 9, 172, 714, 1018, 1181
BsmFI GGGAC 2 cut(s) 600, 727
BsmI GAATGC 2 cut(s) 456, 853
Bso31I GGTCTC 2 cut(s) 714, 1018
BsoBI CYCGRG 2 cut(s) 835, 1073
Bsp1286I GDGCHC 1 cut(s) 862
Bsp13I TCCGGA 1 cut(s) 1119
Bsp143I GATC 4 cut(s) 171, 273, 762, 915
Bsp19I CCATGG 1 cut(s) 519
BspACI CCGC 4 cut(s) 364, 591, 641, 935
BspCNI CTCAG 2 cut(s) 1018, 1141
BspEI TCCGGA 1 cut(s) 1119
BspFNI CGCG 2 cut(s) 591, 641
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 1 cut(s) 237
BspTNI GGTCTC 2 cut(s) 714, 1018
BsrI ACTGG 2 cut(s) 433, 893
BssECI CCNNGG 4 cut(s) 519, 724, 1017, 1074
BssMI GATC 4 cut(s) 171, 273, 762, 915
BssNAI GTATAC 1 cut(s) 799
BssT1I CCWWGG 1 cut(s) 519
Bst1107I GTATAC 1 cut(s) 799
Bst2UI CCWGG 4 cut(s) 233, 681, 726, 1018
Bst4CI ACNGT 2 cut(s) 66, 422
Bst6I CTCTTC 4 cut(s) 264, 536, 701, 1233
BstDEI CTNAG 4 cut(s) 177, 802, 1026, 1128
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 6 cut(s) 190, 455, 541, 557, 732, 931
BstFNI CGCG 2 cut(s) 591, 641
BstHHI GCGC 2 cut(s) 1041, 1273
BstKTI GATC 4 cut(s) 174, 276, 765, 918
BstMAI GTCTC 5 cut(s) 9, 172, 714, 1018, 1181
BstMBI GATC 4 cut(s) 171, 273, 762, 915
BstMWI GCNNNNNNNGC 3 cut(s) 187, 376, 857
BstNI CCWGG 4 cut(s) 233, 681, 726, 1018
BstNSI RCATGY 1 cut(s) 1165
BstSCI CCNGG 5 cut(s) 231, 679, 724, 1016, 1045
BstUI CGCG 2 cut(s) 591, 641
BstV1I GCAGC 3 cut(s) 115, 421, 465
BstZ17I GTATAC 1 cut(s) 799
BsuI GTATCC 1 cut(s) 587
BtgI CCRYGG 1 cut(s) 519
BtgZI GCGATG 2 cut(s) 39, 212
BtsCI GGATG 6 cut(s) 190, 455, 541, 557, 732, 931
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
CciI TCATGA 1 cut(s) 912
CfoI GCGC 2 cut(s) 1041, 1273
Cfr13I GGNCC 4 cut(s) 290, 393, 891, 1001
CseI GACGC 3 cut(s) 96, 415, 597
CviAII CATG 8 cut(s) 187, 469, 520, 577, 913, 952, 1162, 1252
DdeI CTNAG 4 cut(s) 177, 802, 1026, 1128
DpnI GATC 4 cut(s) 173, 275, 764, 917
DpnII GATC 4 cut(s) 171, 273, 762, 915
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
Eam1104I CTCTTC 4 cut(s) 264, 536, 701, 1233
EarI CTCTTC 4 cut(s) 264, 536, 701, 1233
EciI GGCGGA 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 519
Eco31I GGTCTC 2 cut(s) 714, 1018
Eco47I GGWCC 4 cut(s) 290, 393, 891, 1001
Eco57I CTGAAG 1 cut(s) 845
Eco88I CYCGRG 2 cut(s) 835, 1073
EcoRI GAATTC 1 cut(s) 509
EcoRII CCWGG 4 cut(s) 231, 679, 724, 1016
EcoT14I CCWWGG 1 cut(s) 519
EcoT22I ATGCAT 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 8 cut(s) 190, 472, 523, 580, 916, 955, 1165, 1255
FaqI GGGAC 2 cut(s) 600, 727
FatI CATG 8 cut(s) 186, 468, 519, 576, 912, 951, 1161, 1251
FbaI TGATCA 1 cut(s) 762
FblI GTMKAC 1 cut(s) 798
Fnu4HI GCNGC 3 cut(s) 129, 410, 454
FokI GGATG 6 cut(s) 177, 462, 528, 564, 719, 918
Fsp4HI GCNGC 3 cut(s) 129, 410, 454
FspBI CTAG 4 cut(s) 665, 752, 944, 1257
GlaI GCGC 2 cut(s) 1040, 1272
GluI GCNGC 3 cut(s) 129, 410, 454
GsuI CTGGAG 5 cut(s) 401, 416, 633, 663, 1000
HapII CCGG 6 cut(s) 194, 391, 1046, 1088, 1120, 1288
HgaI GACGC 3 cut(s) 96, 415, 597
HhaI GCGC 2 cut(s) 1041, 1273
Hin1II CATG 8 cut(s) 190, 472, 523, 580, 916, 955, 1165, 1255
Hin6I GCGC 2 cut(s) 1039, 1271
HinP1I GCGC 2 cut(s) 1039, 1271
HincII GTYRAC 2 cut(s) 199, 223
HindII GTYRAC 2 cut(s) 199, 223
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 7 cut(s) 581, 600, 627, 646, 878, 1136, 1142
HpaII CCGG 6 cut(s) 194, 391, 1046, 1088, 1120, 1288
HphI GGTGA 4 cut(s) 12, 474, 655, 695
Hpy166II GTNNAC 4 cut(s) 199, 223, 304, 799
Hpy188I TCNGA 8 cut(s) 157, 500, 762, 767, 825, 1110, 1131, 1141
Hpy8I GTNNAC 4 cut(s) 199, 223, 304, 799
HpyAV CCTTC 4 cut(s) 281, 820, 1126, 1175
HpyCH4III ACNGT 2 cut(s) 66, 422
HpyCH4IV ACGT 1 cut(s) 867
HpyCH4V TGCA 4 cut(s) 190, 453, 851, 908
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 376, 857
HpyF3I CTNAG 4 cut(s) 177, 802, 1026, 1128
HpySE526I ACGT 1 cut(s) 867
Hsp92II CATG 8 cut(s) 190, 472, 523, 580, 916, 955, 1165, 1255
HspAI GCGC 2 cut(s) 1039, 1271
Kpn2I TCCGGA 1 cut(s) 1119
Ksp22I TGATCA 1 cut(s) 762
Kzo9I GATC 4 cut(s) 171, 273, 762, 915
LmnI GCTCC 2 cut(s) 186, 857
Lsp1109I GCAGC 3 cut(s) 115, 421, 465
LweI GCATC 3 cut(s) 199, 440, 549
MaeI CTAG 4 cut(s) 665, 752, 944, 1257
MaeII ACGT 1 cut(s) 867
MaeIII GTNAC 6 cut(s) 331, 643, 728, 992, 1021, 1049
MalI GATC 4 cut(s) 173, 275, 764, 917
MboI GATC 4 cut(s) 171, 273, 762, 915
MboII GAAGA 7 cut(s) 281, 353, 505, 523, 718, 910, 1250
MfeI CAATTG 1 cut(s) 852
MhlI GDGCHC 1 cut(s) 862
MlyI GAGTC 3 cut(s) 640, 887, 1151
Mph1103I ATGCAT 1 cut(s) 192
MroI TCCGGA 1 cut(s) 1119
MroXI GAANNNNTTC 2 cut(s) 494, 830
MseI TTAA 2 cut(s) 38, 975
MspI CCGG 6 cut(s) 194, 391, 1046, 1088, 1120, 1288
MspR9I CCNGG 5 cut(s) 233, 681, 726, 1018, 1047
MunI CAATTG 1 cut(s) 852
Mva1269I GAATGC 2 cut(s) 456, 853
MvaI CCWGG 4 cut(s) 233, 681, 726, 1018
MvnI CGCG 2 cut(s) 591, 641
MwoI GCNNNNNNNGC 3 cut(s) 187, 376, 857
NciI CCSGG 1 cut(s) 1047
NcoI CCATGG 1 cut(s) 519
NdeII GATC 4 cut(s) 171, 273, 762, 915
NlaIII CATG 8 cut(s) 190, 472, 523, 580, 916, 955, 1165, 1255
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 2 cut(s) 643, 992
NsiI ATGCAT 1 cut(s) 192
NspI RCATGY 1 cut(s) 1165
PagI TCATGA 1 cut(s) 912
PcsI WCGNNNNNNNCGW 1 cut(s) 595
PctI GAATGC 2 cut(s) 456, 853
PdmI GAANNNNTTC 2 cut(s) 494, 830
PfeI GAWTC 4 cut(s) 581, 600, 627, 1136
PflMI CCANNNNNTGG 1 cut(s) 888
PkrI GCNGC 3 cut(s) 130, 411, 455
PleI GAGTC 3 cut(s) 640, 886, 1150
PpsI GAGTC 3 cut(s) 640, 886, 1150
PsiI TTATAA 1 cut(s) 75
Psp6I CCWGG 4 cut(s) 231, 679, 724, 1016
PspGI CCWGG 4 cut(s) 231, 679, 724, 1016
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 4 cut(s) 290, 393, 891, 1001
SaqAI TTAA 2 cut(s) 38, 975
SatI GCNGC 3 cut(s) 129, 410, 454
Sau3AI GATC 4 cut(s) 171, 273, 762, 915
Sau96I GGNCC 4 cut(s) 290, 393, 891, 1001
SchI GAGTC 3 cut(s) 640, 887, 1151
ScrFI CCNGG 5 cut(s) 233, 681, 726, 1018, 1047
SduI GDGCHC 1 cut(s) 862
SfaNI GCATC 3 cut(s) 199, 440, 549
SinI GGWCC 4 cut(s) 290, 393, 891, 1001
SmlI CTYRAG 1 cut(s) 546
SmoI CTYRAG 1 cut(s) 546
SsiI CCGC 4 cut(s) 364, 591, 641, 935
SspMI CTAG 4 cut(s) 665, 752, 944, 1257
StyD4I CCNGG 5 cut(s) 231, 679, 724, 1016, 1045
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 2 cut(s) 66, 422
TaiI ACGT 1 cut(s) 870
TaqI TCGA 5 cut(s) 170, 424, 569, 921, 1145
TfiI GAWTC 4 cut(s) 581, 600, 627, 1136
Tru1I TTAA 2 cut(s) 38, 975
Tru9I TTAA 2 cut(s) 38, 975
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 2 cut(s) 643, 992
TseI GCWGC 3 cut(s) 128, 409, 453
Tsp45I GTSAC 2 cut(s) 643, 992
TspGWI ACGGA 2 cut(s) 462, 1014
TspRI CASTG 1 cut(s) 97
Van91I CCANNNNNTGG 1 cut(s) 888
VpaK11BI GGWCC 4 cut(s) 290, 393, 891, 1001
XapI RAATTY 4 cut(s) 509, 687, 959, 1104
XceI RCATGY 1 cut(s) 1165
XcmI CCANNNNNNNNNTGG 1 cut(s) 687
XmiI GTMKAC 1 cut(s) 798
XmnI GAANNNNTTC 2 cut(s) 494, 830
XspI CTAG 4 cut(s) 665, 752, 944, 1257
Zsp2I ATGCAT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.