RLG00000019557

Glycosyltransferase sugar-binding region containing DXD motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004935
Physical Location & Seq
Forward (+)
53519966 .. 53521222
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019557

Sequence Viewer

Length: 1257 bp
ATGTCACAAAAAGTGTTTGATTATAACCTATTTAGACGCATTGCCAAATCTCCTATTTTCTCCACCATCTCATTTGCTGCCATATTCTTTCTCCTCTATTCATCAGACACCATAGTCTCGACCTCTAACCTTCCCATGCACCCGGTTGACCTCAAAAGTCATAAAATTCTTGACCATCGCCAGGAACCAACCTTGATTACTACTAGTAATATCCAAGAAGAGATCAGCATTGATGAAGGTCCGGATGAAGTTTACGACCCTCTGATCCCTCCCGACAATGTAACAAAAGAAGAAAGACTAGTGTGGTTCAGGCGAAAGCTTCCAGAGCTGGAGATACTCAGGTCCAACAGCTTGACGCAGCAATTCCACAGTCGAGTTCTCCAGTTCCTCAACAACGGATGCAGCATTCAATTCTACATGATATGGTTTTCACCAGCAAAGTCATTCGGAAAAAGAGAATTCTTCACCATGGACAGCCTCTTCAAATCTCACCCTAAAGGCTGCTTGGTGATCGTCTCTAAATCCATGGATTCAGGACTGGGATACAGAATCCTGAAGCCACTACTGGATCGAGAATTCAGAATCCTCACGATCACGCCAGACTTACCATTTCTAGTGAAGAACACACCAGCTGAGTCTTGGCTTGATGAAATGAAGAGTGGGAGGAGAGACCCAGGTAACATTCCATTGTCTCAAAACCTATCAAATCTTATTAGGCTGGCAATGCTGTACAAATATGGAGGTGTATACTTAGACACAGACTTCATAATTCTGAAGGGCTTCTCTGGTTTGAGGAATGCAGTTGGGGCACAAAGTATAGACTCGGGGTCCAAAAACTGGACCAGACTAAATAGTGCAGTGATGATCTTTGACATACGGCATCCACTTTTGAGAGACTTCTTGTATGAATTTGCTTCAACTTTTAATGGAAACAAATGGGGTCATAATGGACCATACCTGGTTTCAAGGGTGATTAAGGATGTGGGAAGTACACCTGATTATAACCTTACGGTTTTACCTCTGGAGGCATTTTATCCGGTAGACTGGAAGAGGATCGGGAGGCTTTATAGGAAGCCTCAGAAGGATTCGGAGTCGAGATGGGTGGAAAGGATGTTGAATAAGTTGAATGAAGGGGAGACTTATGCCGTTCACCTATGGAACAAGCGAAGTAGAGCATTGGCCATTGAAGAGGGAAGTGTCATGGCTAGACTAATGTCAGAGCACTGTGTAATTTGCCAGGACATTTATACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00601 ko00603 ko01100 map00601 map00603 map01100
Pfam Domains
Protein Families
Gb3_synth Gly_transf_sug

Protein Analysis

419

Amino Acids

48.23

Weight (kDa)

8.94

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly_transf_sug PF04488 152 - 271 2.6e-21 Glycosyltransferase sugar-binding region containing DXD motif
Gb3_synth PF04572 290 - 413 3.5e-27 Alpha 1,4-glycosyltransferase conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 24, 1002
AasI GACNNNNNNGTC 1 cut(s) 113
AccB7I CCANNNNNTGG 1 cut(s) 837
AccI GTMKAC 2 cut(s) 747, 1041
AccIII TCCGGA 1 cut(s) 241
AclWI GGATC 3 cut(s) 259, 576, 1061
AcoI YGGCCR 1 cut(s) 1179
AcsI RAATTY 4 cut(s) 165, 458, 575, 908
AcuI CTGAAG 2 cut(s) 575, 794
AfaI GTAC 2 cut(s) 731, 991
AfiI CCNNNNNNNGG 2 cut(s) 181, 837
AgsI TTSAA 7 cut(s) 410, 484, 918, 966, 1117, 1126, 1187
AhdI GACNNNNNGTC 1 cut(s) 826
AhlI ACTAGT 2 cut(s) 203, 298
AjnI CCWGG 4 cut(s) 180, 673, 957, 1236
AluBI AGCT 4 cut(s) 319, 328, 351, 632
AluI AGCT 4 cut(s) 319, 328, 351, 632
Alw21I GWGCWC 1 cut(s) 1224
Alw26I GTCTC 6 cut(s) 121, 520, 663, 696, 888, 1130
AlwI GGATC 3 cut(s) 259, 576, 1061
Ama87I CYCGRG 1 cut(s) 823
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 1 cut(s) 1179
ApeKI GCWGC 4 cut(s) 77, 358, 402, 501
ApoI RAATTY 4 cut(s) 165, 458, 575, 908
Asp700I GAANNNNTTC 1 cut(s) 779
AspS9I GGNCC 5 cut(s) 239, 342, 828, 840, 950
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 6 cut(s) 423, 457, 482, 520, 982, 1142
AvaI CYCGRG 1 cut(s) 823
AvaII GGWCC 5 cut(s) 239, 342, 828, 840, 950
BaeGI GKGCMC 1 cut(s) 811
BaeI ACNNNNGTAYC 2 cut(s) 326, 359
BalI TGGCCA 1 cut(s) 1181
Bbv12I GWGCWC 1 cut(s) 1224
BbvI GCAGC 4 cut(s) 64, 370, 414, 488
BccI CCATC 3 cut(s) 74, 183, 1092
BceAI ACGGC 2 cut(s) 893, 1130
BciT130I CCWGG 4 cut(s) 182, 675, 959, 1238
BciVI GTATCC 1 cut(s) 536
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 6 cut(s) 121, 520, 663, 696, 888, 1130
BcuI ACTAGT 2 cut(s) 203, 298
BfaI CTAG 4 cut(s) 204, 299, 614, 1206
BfuI GTATCC 1 cut(s) 536
BisI GCNGC 4 cut(s) 78, 359, 403, 502
BlsI GCNGC 4 cut(s) 79, 360, 404, 503
Bme1390I CCNGG 5 cut(s) 143, 182, 675, 959, 1238
Bme18I GGWCC 5 cut(s) 239, 342, 828, 840, 950
BmeRI GACNNNNNGTC 1 cut(s) 826
BmeT110I CYCGRG 1 cut(s) 823
BmgT120I GGNCC 5 cut(s) 239, 342, 828, 840, 950
BmiI GGNNCC 2 cut(s) 186, 829
BmrFI CCNGG 5 cut(s) 143, 182, 675, 959, 1238
BmrI ACTGGG 1 cut(s) 548
BmsI GCATC 2 cut(s) 389, 889
BmuI ACTGGG 1 cut(s) 548
BoxI GACNNNNGTC 1 cut(s) 1213
BpmI CTGGAG 3 cut(s) 350, 365, 1043
BpuMI CCSGG 1 cut(s) 143
BsaI GGTCTC 1 cut(s) 663
BsaJI CCNNGG 3 cut(s) 468, 525, 673
BsaWI WCCGGW 2 cut(s) 241, 1036
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 837
Bse1I ACTGG 5 cut(s) 382, 543, 570, 842, 1049
Bse3DI GCAATG 2 cut(s) 39, 729
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 4 cut(s) 182, 675, 959, 1238
BseDI CCNNGG 3 cut(s) 468, 525, 673
BseGI GGATG 5 cut(s) 250, 404, 880, 985, 1116
BseLI CCNNNNNNNGG 2 cut(s) 181, 837
BseMI GCAATG 2 cut(s) 39, 729
BseMII CTCAG 3 cut(s) 352, 624, 1091
BseNI ACTGG 5 cut(s) 382, 543, 570, 842, 1049
BseRI GAGGAG 2 cut(s) 83, 679
BseSI GKGCMC 1 cut(s) 811
BseXI GCAGC 4 cut(s) 64, 370, 414, 488
BsgI GTGCAG 1 cut(s) 876
BshFI GGCC 1 cut(s) 1181
BsiHKAI GWGCWC 1 cut(s) 1224
BsiHKCI CYCGRG 1 cut(s) 823
BsiSI CCGG 3 cut(s) 143, 242, 1037
BslI CCNNNNNNNGG 2 cut(s) 181, 837
BsmAI GTCTC 6 cut(s) 121, 520, 663, 696, 888, 1130
BsmBI CGTCTC 1 cut(s) 520
BsmI GAATGC 2 cut(s) 405, 802
BsnI GGCC 1 cut(s) 1181
Bso31I GGTCTC 1 cut(s) 663
BsoBI CYCGRG 1 cut(s) 823
Bsp1286I GDGCHC 2 cut(s) 811, 1224
Bsp13I TCCGGA 1 cut(s) 241
Bsp1407I TGTACA 1 cut(s) 729
Bsp143I GATC 7 cut(s) 222, 264, 510, 568, 591, 864, 1053
Bsp19I CCATGG 2 cut(s) 468, 525
BspANI GGCC 1 cut(s) 1181
BspCNI CTCAG 3 cut(s) 351, 625, 1090
BspEI TCCGGA 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 186, 829
BspPI GGATC 3 cut(s) 259, 576, 1061
BspTNI GGTCTC 1 cut(s) 663
BsrDI GCAATG 2 cut(s) 39, 729
BsrGI TGTACA 1 cut(s) 729
BsrI ACTGG 5 cut(s) 382, 543, 570, 842, 1049
BssECI CCNNGG 3 cut(s) 468, 525, 673
BssMI GATC 7 cut(s) 222, 264, 510, 568, 591, 864, 1053
BssNAI GTATAC 1 cut(s) 748
BssT1I CCWWGG 2 cut(s) 468, 525
Bst1107I GTATAC 1 cut(s) 748
Bst2UI CCWGG 4 cut(s) 182, 675, 959, 1238
Bst4CI ACNGT 3 cut(s) 371, 1012, 1226
Bst6I CTCTTC 5 cut(s) 213, 485, 650, 1043, 1182
BstAUI TGTACA 1 cut(s) 729
BstC8I GCNNGC 1 cut(s) 720
BstDEI CTNAG 4 cut(s) 338, 633, 751, 1077
BstDSI CCRYGG 2 cut(s) 468, 525
BstF5I GGATG 5 cut(s) 250, 404, 880, 985, 1116
BstKTI GATC 7 cut(s) 225, 267, 513, 571, 594, 867, 1056
BstMAI GTCTC 6 cut(s) 121, 520, 663, 696, 888, 1130
BstMBI GATC 7 cut(s) 222, 264, 510, 568, 591, 864, 1053
BstMWI GCNNNNNNNGC 3 cut(s) 325, 724, 806
BstNI CCWGG 4 cut(s) 182, 675, 959, 1238
BstPAI GACNNNNGTC 1 cut(s) 1213
BstSCI CCNGG 5 cut(s) 141, 180, 673, 957, 1236
BstSLI GKGCMC 1 cut(s) 811
BstV1I GCAGC 4 cut(s) 64, 370, 414, 488
BstZ17I GTATAC 1 cut(s) 748
BsuI GTATCC 1 cut(s) 536
BsuRI GGCC 1 cut(s) 1181
BtgI CCRYGG 2 cut(s) 468, 525
BtgZI GCGATG 1 cut(s) 161
BtsCI GGATG 5 cut(s) 250, 404, 880, 985, 1116
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 2 cut(s) 864, 1222
Cac8I GCNNGC 1 cut(s) 720
Cfr13I GGNCC 5 cut(s) 239, 342, 828, 840, 950
CseI GACGC 2 cut(s) 45, 364
CsiI ACCWGGT 1 cut(s) 957
Csp6I GTAC 2 cut(s) 730, 990
CviAII CATG 5 cut(s) 136, 418, 469, 526, 1201
CviQI GTAC 2 cut(s) 730, 990
DdeI CTNAG 4 cut(s) 338, 633, 751, 1077
DpnI GATC 7 cut(s) 224, 266, 512, 570, 593, 866, 1055
DpnII GATC 7 cut(s) 222, 264, 510, 568, 591, 864, 1053
DrdI GACNNNNNNGTC 1 cut(s) 113
DriI GACNNNNNGTC 1 cut(s) 826
DseDI GACNNNNNNGTC 1 cut(s) 113
EaeI YGGCCR 1 cut(s) 1179
Eam1104I CTCTTC 5 cut(s) 213, 485, 650, 1043, 1182
Eam1105I GACNNNNNGTC 1 cut(s) 826
EarI CTCTTC 5 cut(s) 213, 485, 650, 1043, 1182
Eco130I CCWWGG 2 cut(s) 468, 525
Eco31I GGTCTC 1 cut(s) 663
Eco47I GGWCC 5 cut(s) 239, 342, 828, 840, 950
Eco57I CTGAAG 2 cut(s) 575, 794
Eco88I CYCGRG 1 cut(s) 823
EcoRI GAATTC 2 cut(s) 458, 575
EcoRII CCWGG 4 cut(s) 180, 673, 957, 1236
EcoT14I CCWWGG 2 cut(s) 468, 525
ErhI CCWWGG 2 cut(s) 468, 525
Esp3I CGTCTC 1 cut(s) 520
FaeI CATG 5 cut(s) 139, 421, 472, 529, 1204
FatI CATG 5 cut(s) 135, 417, 468, 525, 1200
FblI GTMKAC 2 cut(s) 747, 1041
Fnu4HI GCNGC 4 cut(s) 78, 359, 403, 502
FokI GGATG 5 cut(s) 257, 411, 867, 992, 1123
Fsp4HI GCNGC 4 cut(s) 78, 359, 403, 502
FspBI CTAG 4 cut(s) 204, 299, 614, 1206
GluI GCNGC 4 cut(s) 78, 359, 403, 502
GsuI CTGGAG 3 cut(s) 350, 365, 1043
HaeIII GGCC 1 cut(s) 1181
HapII CCGG 3 cut(s) 143, 242, 1037
HgaI GACGC 2 cut(s) 45, 364
Hin1II CATG 5 cut(s) 139, 421, 472, 529, 1204
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 7 cut(s) 530, 549, 582, 635, 821, 1085, 1091
HpaII CCGG 3 cut(s) 143, 242, 1037
HphI GGTGA 6 cut(s) 423, 457, 482, 520, 982, 1142
Hpy166II GTNNAC 6 cut(s) 148, 253, 748, 992, 1042, 1150
Hpy188I TCNGA 8 cut(s) 106, 264, 449, 581, 774, 1080, 1090, 1219
Hpy8I GTNNAC 6 cut(s) 148, 253, 748, 992, 1042, 1150
HpyAV CCTTC 5 cut(s) 140, 230, 769, 1075, 1124
HpyCH4III ACNGT 3 cut(s) 371, 1012, 1226
HpyCH4V TGCA 4 cut(s) 139, 402, 800, 857
HpyF10VI GCNNNNNNNGC 3 cut(s) 325, 724, 806
HpyF3I CTNAG 4 cut(s) 338, 633, 751, 1077
Hsp92II CATG 5 cut(s) 139, 421, 472, 529, 1204
Kpn2I TCCGGA 1 cut(s) 241
Kzo9I GATC 7 cut(s) 222, 264, 510, 568, 591, 864, 1053
Lsp1109I GCAGC 4 cut(s) 64, 370, 414, 488
LweI GCATC 2 cut(s) 389, 889
MabI ACCWGGT 1 cut(s) 957
MaeI CTAG 4 cut(s) 204, 299, 614, 1206
MaeIII GTNAC 3 cut(s) 3, 280, 677
MalI GATC 7 cut(s) 224, 266, 512, 570, 593, 866, 1055
MboI GATC 7 cut(s) 222, 264, 510, 568, 591, 864, 1053
MboII GAAGA 8 cut(s) 230, 302, 454, 472, 631, 667, 1060, 1199
MhlI GDGCHC 2 cut(s) 811, 1224
MlsI TGGCCA 1 cut(s) 1181
MluCI AATT 8 cut(s) 165, 362, 410, 458, 575, 768, 908, 1230
MluNI TGGCCA 1 cut(s) 1181
MlyI GAGTC 3 cut(s) 644, 815, 1100
MmeI TCCRAC 1 cut(s) 369
Mox20I TGGCCA 1 cut(s) 1181
MroI TCCGGA 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 779
MscI TGGCCA 1 cut(s) 1181
MseI TTAA 2 cut(s) 924, 975
Msp20I TGGCCA 1 cut(s) 1181
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 3 cut(s) 143, 242, 1037
MspR9I CCNGG 5 cut(s) 143, 182, 675, 959, 1238
Mva1269I GAATGC 2 cut(s) 405, 802
MvaI CCWGG 4 cut(s) 182, 675, 959, 1238
MwoI GCNNNNNNNGC 3 cut(s) 325, 724, 806
NciI CCSGG 1 cut(s) 143
NcoI CCATGG 2 cut(s) 468, 525
NdeII GATC 7 cut(s) 222, 264, 510, 568, 591, 864, 1053
NlaIII CATG 5 cut(s) 139, 421, 472, 529, 1204
NlaIV GGNNCC 2 cut(s) 186, 829
NmuCI GTSAC 1 cut(s) 3
PctI GAATGC 2 cut(s) 405, 802
PdmI GAANNNNTTC 1 cut(s) 779
PfeI GAWTC 4 cut(s) 530, 549, 582, 1085
PflMI CCANNNNNTGG 1 cut(s) 837
PkrI GCNGC 4 cut(s) 79, 360, 404, 503
PleI GAGTC 3 cut(s) 643, 815, 1099
PpsI GAGTC 3 cut(s) 643, 815, 1099
PshAI GACNNNNGTC 1 cut(s) 1213
PsiI TTATAA 2 cut(s) 24, 1002
Psp6I CCWGG 4 cut(s) 180, 673, 957, 1236
PspGI CCWGG 4 cut(s) 180, 673, 957, 1236
PspN4I GGNNCC 2 cut(s) 186, 829
PspPI GGNCC 5 cut(s) 239, 342, 828, 840, 950
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 2 cut(s) 731, 991
RsaNI GTAC 2 cut(s) 730, 990
SaqAI TTAA 2 cut(s) 924, 975
SatI GCNGC 4 cut(s) 78, 359, 403, 502
Sau3AI GATC 7 cut(s) 222, 264, 510, 568, 591, 864, 1053
Sau96I GGNCC 5 cut(s) 239, 342, 828, 840, 950
SchI GAGTC 3 cut(s) 644, 815, 1100
ScrFI CCNGG 5 cut(s) 143, 182, 675, 959, 1238
SduI GDGCHC 2 cut(s) 811, 1224
SexAI ACCWGGT 1 cut(s) 957
SfaNI GCATC 2 cut(s) 389, 889
SinI GGWCC 5 cut(s) 239, 342, 828, 840, 950
SpeI ACTAGT 2 cut(s) 203, 298
Sse9I AATT 8 cut(s) 165, 362, 410, 458, 575, 768, 908, 1230
SspMI CTAG 4 cut(s) 204, 299, 614, 1206
StyD4I CCNGG 5 cut(s) 141, 180, 673, 957, 1236
StyI CCWWGG 2 cut(s) 468, 525
TaaI ACNGT 3 cut(s) 371, 1012, 1226
TaqI TCGA 4 cut(s) 119, 373, 571, 1094
TasI AATT 8 cut(s) 165, 362, 410, 458, 575, 768, 908, 1230
TatI WGTACW 2 cut(s) 729, 989
TfiI GAWTC 4 cut(s) 530, 549, 582, 1085
Tru1I TTAA 2 cut(s) 924, 975
Tru9I TTAA 2 cut(s) 924, 975
TscAI CASTG 2 cut(s) 864, 1229
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 4 cut(s) 77, 358, 402, 501
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 8 cut(s) 90, 249, 261, 663, 668, 754, 921, 1143
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 2 cut(s) 864, 1229
Van91I CCANNNNNTGG 1 cut(s) 837
VpaK11BI GGWCC 5 cut(s) 239, 342, 828, 840, 950
XapI RAATTY 4 cut(s) 165, 458, 575, 908
XcmI CCANNNNNNNNNTGG 1 cut(s) 636
XmiI GTMKAC 2 cut(s) 747, 1041
XmnI GAANNNNTTC 1 cut(s) 779
XspI CTAG 4 cut(s) 204, 299, 614, 1206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.