Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004935

Physical Location & Seq

Genomic Coordinates Reverse (-)

25911446 .. 25913106

Gene Structure 1661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G274400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGACAGTCAAAAGAATGTCTCACAAAGTGTTGGATCACAGCCACTTTAGCCGCACCACGAAATCCTCCCTCCTCTCCACCATCTCATTTGCTGCCATCTTCTTCATCATCTATGCAGACATCTTTGTCTCCAACCTTCCCATGCAAACAATTGACTTGAGAAATCATGAAGTTCTTGACCATAATCATGACCAGACTCAGGTGCCTCAAGAGCAAATTGAGTCAACCTTCATAACTGATCAGAGCAAGCCACAGCTTTCAATTCAAGCAAAGATTCAGGAACTTGAAGATGAAATTCGTGATCCTCTGGTTCCTCCAGAAAATGTCACAAAAGAGGAAAGACTTGTGTGGTTCCGACGAAAACTGCCAGAGCTAGAGATACTCAAGTCAAACAACTTGTCACAGCAGTTCCACGGTCGAGTGCTCGAGTTCCTCAACAATGGATGCAGCCTTCAATTCTACATGGTATGGCTTTCACCAGCAAAGTCATTTGGGAAAAGAGATTTCTTGACCATGGACACCCTCTTCAAATCCCACCCTCAAGGATGCTTGATGATCATATCAAACTCCATGGACTCAGCAAGAGGGTACAGAATCCTGAAGCCTTTACTTGACAGAGGGTTCAAAATACTTGCAATCGCACCAGACTTGCCCTTTCTTGTCAAGAACACACCAGCTGAGTCTTGGCTTGAAGAATTAAAGAGTGGCAGGACAGATCCAGGTTACATCCCATTATCTCAAAACCTAGCCAATCTGATTAGGCTTGCAATGCTATACAAATATGGAGGTATCTACTTGGACACAGACTTGATAATTCTGAAGGATTTATCTGGGTTGAGGAATGCAATTGGAGCACAAAGTTTGGATTCAGAGTCCAAAATCTGGAACAGACTAAATGGTGCAGTGATGATCTTTGACATAAACCATCCAATTCTGCTAGAATTCTTAGAAGAATTTGCTACAACTTTTAATGGGAACAAATGGGGTCACAATGGACCTTACTTGGTCTCCAGAGTAATCGCTAGACTAGAAGGGAGTGGAAGGCCACTGGATTATAACTTTACAATATTGCCTCCTGAGGCATTCTATCCATTGGACTGGATTAGGATACACAGGATCTTCAGGAAGCCCGAGAGGGAATCGGAGTCAAGAGCGGTGGAAATGACACTAAATGAGCTAAATGCAAGGGAGACTTACGTTGTGCACCTATGGAACAAACGAAGTAGACAGTTGGCCATTGGAGAGGGAAGTGTCATGGCGAGATTGATCTCAGAGCACTGTGTCATTTGCCAGGACCTATATGTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00601 ko00603 ko01100 map00601 map00603 map01100

Pfam Domains

Protein Families

Gb3_synth Gly_transf_sug

Protein Analysis

437

Amino Acids

50.21

Weight (kDa)

6.68

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38150
fragaria_vesca	FvH4_6g11740 FvH4_6g11750
prunus_persica	Prupe.2G284900_v2.0.a1 Prupe.6G274400_v2.0.a1
pyrus_communis	pycom04g13500
rosa_chinensis	RchiOBHm_Chr3g0463521 RchiOBHm_Chr3g0463531
rosa_laevigata	RLG00000019557 RLG00000024780 RLG00000024781
rosa_multiflora	Rmu_co8351885.1_g000001 Rmu_co8485291.1_g000001 Rmu_sc0000923.1_g000022 Rmu_sc0000923.1_g000023 Rmu_sc0003267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416480 Rroxscaffold_6G00416490
rosa_rugosa	Rorug03G0065400 Rorug03G0065700
rosa_samantha	Rh3AG122600 Rh3AG122700 Rh3BG127300 Rh3BG127400 Rh3CG129200 Rh3CG129300 Rh3DG128100 Rh3DG128200
rosa_wichuraiana	Rw0G010570 Rw0G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1056
AasI	GACNNNNNNGTC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	202
AccB7I	CCANNNNNTGG	1 cut(s)	882
AccBSI	CCGCTC	1 cut(s)	1154
AccI	GTMKAC	1 cut(s)	1225
AciI	CCGC	2 cut(s)	52, 1154
AclWI	GGATC	4 cut(s)	42, 296, 710, 1124
AcoI	YGGCCR	1 cut(s)	1233
AcsI	RAATTY	3 cut(s)	294, 941, 953
AcuI	CTGAAG	3 cut(s)	620, 839, 1105
AdeI	CACNNNGTG	1 cut(s)	28
AfaI	GTAC	1 cut(s)	590
AfiI	CCNNNNNNNGG	2 cut(s)	199, 882
AgsI	TTSAA	7 cut(s)	261, 266, 287, 455, 529, 625, 692
AjnI	CCWGG	2 cut(s)	718, 1290
AluBI	AGCT	4 cut(s)	256, 373, 677, 1177
AluI	AGCT	4 cut(s)	256, 373, 677, 1177
Alw21I	GWGCWC	4 cut(s)	426, 856, 1206, 1278
Alw26I	GTCTC	4 cut(s)	24, 133, 1012, 1184
Alw44I	GTGCAC	1 cut(s)	1202
AlwI	GGATC	4 cut(s)	42, 296, 710, 1124
Ama87I	CYCGRG	2 cut(s)	425, 1130
AoxI	GGCC	2 cut(s)	1043, 1233
ApaLI	GTGCAC	1 cut(s)	1202
ApeKI	GCWGC	2 cut(s)	92, 447
ApoI	RAATTY	3 cut(s)	294, 941, 953
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
AspS9I	GGNCC	2 cut(s)	995, 1294
AsuHPI	GGTGA	1 cut(s)	468
AvaI	CYCGRG	2 cut(s)	425, 1130
AvaII	GGWCC	2 cut(s)	995, 1294
AxyI	CCTNAGG	1 cut(s)	1077
BaeGI	GKGCMC	1 cut(s)	1206
BaeI	ACNNNNGTAYC	2 cut(s)	371, 404
BalI	TGGCCA	1 cut(s)	1235
BanI	GGYRCC	1 cut(s)	202
Bbv12I	GWGCWC	4 cut(s)	426, 856, 1206, 1278
BbvI	GCAGC	2 cut(s)	79, 459
BccI	CCATC	3 cut(s)	89, 104, 933
BciT130I	CCWGG	2 cut(s)	720, 1292
BciVI	GTATCC	1 cut(s)	1101
BclI	TGATCA	2 cut(s)	238, 555
BcoDI	GTCTC	4 cut(s)	24, 133, 1012, 1184
BfaI	CTAG	5 cut(s)	374, 746, 938, 1023, 1028
BfuI	GTATCC	1 cut(s)	1101
BisI	GCNGC	3 cut(s)	52, 93, 448
BlsI	GCNGC	3 cut(s)	53, 94, 449
Bme1390I	CCNGG	2 cut(s)	720, 1292
Bme18I	GGWCC	2 cut(s)	995, 1294
BmeT110I	CYCGRG	2 cut(s)	425, 1130
BmgT120I	GGNCC	2 cut(s)	995, 1294
BmiI	GGNNCC	3 cut(s)	204, 312, 353
BmrFI	CCNGG	2 cut(s)	720, 1292
BmsI	GCATC	2 cut(s)	434, 536
BpmI	CTGGAG	2 cut(s)	300, 994
BpuEI	CTTGAG	4 cut(s)	178, 192, 368, 525
BsaI	GGTCTC	1 cut(s)	1012
BsaJI	CCNNGG	3 cut(s)	412, 513, 570
BsaXI	ACNNNNNCTCC	2 cut(s)	992, 1022
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 882
Bse1I	ACTGG	2 cut(s)	1053, 1103
Bse21I	CCTNAGG	1 cut(s)	1077
Bse3DI	GCAATG	1 cut(s)	774
BseBI	CCWGG	2 cut(s)	720, 1292
BseDI	CCNNGG	3 cut(s)	412, 513, 570
BseGI	GGATG	4 cut(s)	449, 551, 726, 925
BseLI	CCNNNNNNNGG	2 cut(s)	199, 882
BseMI	GCAATG	1 cut(s)	774
BseMII	CTCAG	5 cut(s)	212, 591, 669, 1068, 1284
BseNI	ACTGG	2 cut(s)	1053, 1103
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	1206
BseXI	GCAGC	2 cut(s)	79, 459
BsgI	GTGCAG	1 cut(s)	921
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	2 cut(s)	1045, 1235
BshNI	GGYRCC	1 cut(s)	202
BsiEI	CGRYCG	1 cut(s)	418
BsiHKAI	GWGCWC	4 cut(s)	426, 856, 1206, 1278
BsiHKCI	CYCGRG	2 cut(s)	425, 1130
BslI	CCNNNNNNNGG	2 cut(s)	199, 882
BsmAI	GTCTC	4 cut(s)	24, 133, 1012, 1184
BsmI	GAATGC	2 cut(s)	847, 1082
BsnI	GGCC	2 cut(s)	1045, 1235
Bso31I	GGTCTC	1 cut(s)	1012
BsoBI	CYCGRG	2 cut(s)	425, 1130
Bsp1286I	GDGCHC	4 cut(s)	426, 856, 1206, 1278
Bsp143I	GATC	8 cut(s)	34, 238, 301, 555, 715, 909, 1116, 1266
Bsp19I	CCATGG	2 cut(s)	513, 570
BspACI	CCGC	2 cut(s)	52, 1154
BspANI	GGCC	2 cut(s)	1045, 1235
BspCNI	CTCAG	5 cut(s)	211, 590, 670, 1069, 1283
BspHI	TCATGA	2 cut(s)	166, 187
BspLI	GGNNCC	3 cut(s)	204, 312, 353
BspPI	GGATC	4 cut(s)	42, 296, 710, 1124
BspT107I	GGYRCC	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	1012
BsrBI	CCGCTC	1 cut(s)	1154
BsrDI	GCAATG	1 cut(s)	774
BsrI	ACTGG	2 cut(s)	1053, 1103
BssECI	CCNNGG	3 cut(s)	412, 513, 570
BssMI	GATC	8 cut(s)	34, 238, 301, 555, 715, 909, 1116, 1266
BssT1I	CCWWGG	2 cut(s)	513, 570
Bst2UI	CCWGG	2 cut(s)	720, 1292
Bst4CI	ACNGT	4 cut(s)	7, 416, 1230, 1280
Bst6I	CTCTTC	1 cut(s)	530
BstC8I	GCNNGC	2 cut(s)	248, 765
BstDEI	CTNAG	6 cut(s)	198, 577, 678, 946, 1077, 1270
BstDSI	CCRYGG	3 cut(s)	412, 513, 570
BstF5I	GGATG	4 cut(s)	449, 551, 726, 925
BstKTI	GATC	8 cut(s)	37, 241, 304, 558, 718, 912, 1119, 1269
BstMAI	GTCTC	4 cut(s)	24, 133, 1012, 1184
BstMBI	GATC	8 cut(s)	34, 238, 301, 555, 715, 909, 1116, 1266
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 211, 769, 851
BstNI	CCWGG	2 cut(s)	720, 1292
BstSCI	CCNGG	2 cut(s)	718, 1290
BstSLI	GKGCMC	1 cut(s)	1206
BstV1I	GCAGC	2 cut(s)	79, 459
BstX2I	RGATCY	2 cut(s)	715, 1116
BstXI	CCANNNNNNTGG	1 cut(s)	1098
BstYI	RGATCY	2 cut(s)	715, 1116
Bsu36I	CCTNAGG	1 cut(s)	1077
BsuI	GTATCC	1 cut(s)	1101
BsuRI	GGCC	2 cut(s)	1045, 1235
BtgI	CCRYGG	3 cut(s)	412, 513, 570
BtsCI	GGATG	4 cut(s)	449, 551, 726, 925
BtsI	GCAGTG	1 cut(s)	909
BtsIMutI	CAGTG	3 cut(s)	909, 1046, 1276
Cac8I	GCNNGC	2 cut(s)	248, 765
CciI	TCATGA	2 cut(s)	166, 187
Cfr13I	GGNCC	2 cut(s)	995, 1294
Csp6I	GTAC	1 cut(s)	589
CspCI	CAANNNNNGTGG	2 cut(s)	1137, 1172
CviAII	CATG	7 cut(s)	142, 167, 188, 463, 514, 571, 1255
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	6 cut(s)	198, 577, 678, 946, 1077, 1270
DpnI	GATC	8 cut(s)	36, 240, 303, 557, 717, 911, 1118, 1268
DpnII	GATC	8 cut(s)	34, 238, 301, 555, 715, 909, 1116, 1266
DraIII	CACNNNGTG	1 cut(s)	28
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	1233
Eam1104I	CTCTTC	1 cut(s)	530
EarI	CTCTTC	1 cut(s)	530
Eco130I	CCWWGG	2 cut(s)	513, 570
Eco31I	GGTCTC	1 cut(s)	1012
Eco47I	GGWCC	2 cut(s)	995, 1294
Eco57I	CTGAAG	3 cut(s)	620, 839, 1105
Eco81I	CCTNAGG	1 cut(s)	1077
Eco88I	CYCGRG	2 cut(s)	425, 1130
EcoO109I	RGGNCCY	1 cut(s)	1294
EcoRI	GAATTC	1 cut(s)	941
EcoRII	CCWGG	2 cut(s)	718, 1290
EcoT14I	CCWWGG	2 cut(s)	513, 570
ErhI	CCWWGG	2 cut(s)	513, 570
FaeI	CATG	7 cut(s)	145, 170, 191, 466, 517, 574, 1258
FalI	AAGNNNNNCTT	2 cut(s)	1177, 1209
FatI	CATG	7 cut(s)	141, 166, 187, 462, 513, 570, 1254
FbaI	TGATCA	2 cut(s)	238, 555
FblI	GTMKAC	1 cut(s)	1225
Fnu4HI	GCNGC	3 cut(s)	52, 93, 448
FokI	GGATG	4 cut(s)	456, 558, 713, 912
Fsp4HI	GCNGC	3 cut(s)	52, 93, 448
FspBI	CTAG	5 cut(s)	374, 746, 938, 1023, 1028
GluI	GCNGC	3 cut(s)	52, 93, 448
GsuI	CTGGAG	2 cut(s)	300, 994
HaeIII	GGCC	2 cut(s)	1045, 1235
Hin1II	CATG	7 cut(s)	145, 170, 191, 466, 517, 574, 1258
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HphI	GGTGA	1 cut(s)	468
Hpy166II	GTNNAC	3 cut(s)	225, 1204, 1226
Hpy188I	TCNGA	7 cut(s)	243, 356, 756, 819, 871, 1144, 1273
Hpy8I	GTNNAC	3 cut(s)	225, 1204, 1226
Hpy99I	CGWCG	1 cut(s)	360
HpyAV	CCTTC	6 cut(s)	146, 238, 461, 814, 1025, 1035
HpyCH4III	ACNGT	4 cut(s)	7, 416, 1230, 1280
HpyCH4IV	ACGT	1 cut(s)	1197
HpyCH4V	TGCA	9 cut(s)	116, 145, 447, 635, 767, 845, 902, 1184, 1204
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 211, 769, 851
HpyF3I	CTNAG	6 cut(s)	198, 577, 678, 946, 1077, 1270
HpySE526I	ACGT	1 cut(s)	1197
Hsp92II	CATG	7 cut(s)	145, 170, 191, 466, 517, 574, 1258
Ksp22I	TGATCA	2 cut(s)	238, 555
Kzo9I	GATC	8 cut(s)	34, 238, 301, 555, 715, 909, 1116, 1266
LmnI	GCTCC	1 cut(s)	851
Lsp1109I	GCAGC	2 cut(s)	79, 459
LweI	GCATC	2 cut(s)	434, 536
MaeI	CTAG	5 cut(s)	374, 746, 938, 1023, 1028
MaeII	ACGT	1 cut(s)	1197
MaeIII	GTNAC	4 cut(s)	325, 399, 722, 986
MalI	GATC	8 cut(s)	36, 240, 303, 557, 717, 911, 1118, 1268
MbiI	CCGCTC	1 cut(s)	1154
MboI	GATC	8 cut(s)	34, 238, 301, 555, 715, 909, 1116, 1266
MboII	GAAGA	7 cut(s)	91, 94, 299, 517, 704, 962, 1111
MfeI	CAATTG	2 cut(s)	150, 846
MflI	RGATCY	2 cut(s)	715, 1116
MhlI	GDGCHC	4 cut(s)	426, 856, 1206, 1278
MlsI	TGGCCA	1 cut(s)	1235
MluNI	TGGCCA	1 cut(s)	1235
MlyI	GAGTC	6 cut(s)	190, 230, 569, 689, 881, 1154
MmeI	TCCRAC	3 cut(s)	12, 156, 379
Mox20I	TGGCCA	1 cut(s)	1235
MscI	TGGCCA	1 cut(s)	1235
MseI	TTAA	3 cut(s)	698, 969, 1309
MslI	CAYNNNNRTG	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	1235
MspA1I	CMGCKG	1 cut(s)	677
MspR9I	CCNGG	2 cut(s)	720, 1292
MunI	CAATTG	2 cut(s)	150, 846
Mva1269I	GAATGC	2 cut(s)	847, 1082
MvaI	CCWGG	2 cut(s)	720, 1292
MwoI	GCNNNNNNNGC	4 cut(s)	48, 211, 769, 851
NcoI	CCATGG	2 cut(s)	513, 570
NdeII	GATC	8 cut(s)	34, 238, 301, 555, 715, 909, 1116, 1266
NlaIII	CATG	7 cut(s)	145, 170, 191, 466, 517, 574, 1258
NlaIV	GGNNCC	3 cut(s)	204, 312, 353
NmuCI	GTSAC	3 cut(s)	325, 399, 986
PaeR7I	CTCGAG	1 cut(s)	425
PagI	TCATGA	2 cut(s)	166, 187
PctI	GAATGC	2 cut(s)	847, 1082
PfeI	GAWTC	4 cut(s)	274, 594, 866, 1139
PflMI	CCANNNNNTGG	1 cut(s)	882
PkrI	GCNGC	3 cut(s)	53, 94, 449
PleI	GAGTC	6 cut(s)	190, 229, 569, 688, 880, 1153
PpsI	GAGTC	6 cut(s)	190, 229, 569, 688, 880, 1153
PpuMI	RGGWCCY	1 cut(s)	1294
PsiI	TTATAA	1 cut(s)	1056
Psp5II	RGGWCCY	1 cut(s)	1294
Psp6I	CCWGG	2 cut(s)	718, 1290
PspGI	CCWGG	2 cut(s)	718, 1290
PspN4I	GGNNCC	3 cut(s)	204, 312, 353
PspPI	GGNCC	2 cut(s)	995, 1294
PspPPI	RGGWCCY	1 cut(s)	1294
PspXI	VCTCGAGB	1 cut(s)	425
PsuI	RGATCY	2 cut(s)	715, 1116
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	698, 969, 1309
SatI	GCNGC	3 cut(s)	52, 93, 448
Sau3AI	GATC	8 cut(s)	34, 238, 301, 555, 715, 909, 1116, 1266
Sau96I	GGNCC	2 cut(s)	995, 1294
SchI	GAGTC	6 cut(s)	190, 230, 569, 689, 881, 1154
ScrFI	CCNGG	2 cut(s)	720, 1292
SduI	GDGCHC	4 cut(s)	426, 856, 1206, 1278
SfaNI	GCATC	2 cut(s)	434, 536
Sfr274I	CTCGAG	1 cut(s)	425
SinI	GGWCC	2 cut(s)	995, 1294
SlaI	CTCGAG	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	5 cut(s)	157, 207, 383, 425, 540
SmoI	CTYRAG	5 cut(s)	157, 207, 383, 425, 540
SsiI	CCGC	2 cut(s)	52, 1154
SspI	AATATT	1 cut(s)	1068
SspMI	CTAG	5 cut(s)	374, 746, 938, 1023, 1028
StyD4I	CCNGG	2 cut(s)	718, 1290
StyI	CCWWGG	2 cut(s)	513, 570
TaaI	ACNGT	4 cut(s)	7, 416, 1230, 1280
TaiI	ACGT	1 cut(s)	1200
TaqI	TCGA	2 cut(s)	418, 426
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	4 cut(s)	274, 594, 866, 1139
Tru1I	TTAA	3 cut(s)	698, 969, 1309
Tru9I	TTAA	3 cut(s)	698, 969, 1309
TscAI	CASTG	3 cut(s)	909, 1053, 1283
TseFI	GTSAC	3 cut(s)	325, 399, 986
TseI	GCWGC	2 cut(s)	92, 447
Tsp45I	GTSAC	3 cut(s)	325, 399, 986
TspDTI	ATGAA	4 cut(s)	94, 183, 220, 306
TspRI	CASTG	3 cut(s)	909, 1053, 1283
Van91I	CCANNNNNTGG	1 cut(s)	882
VneI	GTGCAC	1 cut(s)	1202
VpaK11BI	GGWCC	2 cut(s)	995, 1294
XapI	RAATTY	3 cut(s)	294, 941, 953
XcmI	CCANNNNNNNNNTGG	1 cut(s)	681
XhoI	CTCGAG	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	1225
XspI	CTAG	5 cut(s)	374, 746, 938, 1023, 1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.