Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006582

Physical Location & Seq

Genomic Coordinates Reverse (-)

16196265 .. 16198832

Gene Structure 2568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCTCTTCCTCTCGAGCTCGAAAGCCTCACTGAAGCCATCTCAGCTGGGATGGGAATGGGAGTTGATGAGAATGCATTGATAAGCACACTGGGGAAATCGCAAAAGGAACATAGAAAATTGTTTAGGAAAGCAAGCAAAAGTTTCTTTGTTGAAGATGAGGAAAGAGCTTTTGAGAAATGTCATGATCACTTCGTCAGACACCTCAAGCTTGAGTTCTCCCGCTTCAATACTGCGGTGGTGATGTGGGCAATGCATCCATGGGAGAGAGATGCAAGGTTGGTGAAGAAAGCTTTGAAGAAAGGAGAAGAAGCTTACAACCTCATCGTTGAGGTCTCATGCACACGCTCTGCTGAGGATCTCCTCGGTGCACGTAAAGCTTACCACTCTCTCTTCGACCAATCAATGGAAGAAGACATTGCCTCTCACGTCCACGGTCCTCAGCGCAAGTTGCTTGTGGGGCTCGTGAGTGCTTATAGATACGAAGGAAATAAGGTGAAGGATGATTCTGCCAAATCCGATGCTAAGATTCTAGCCGAAGCAGTGGCTTCTTCAGGCGAAGAAGCCGTGGAGAAGGATGAGGTTGTTAGGATTTTGACCACAAGAAGCAAACTTCATCTCCAACATCTCTACAAACACTTTAACGAAATCAAAGGCTCTGATCTTCTTGGGGGTGTATCTAAGTCTTCTCTTCTCAATGAAGCATTGATTTGTTTGCTCAAACCGGCTCTGTATTTCAGCAAGATTTTGGATGCGTCTCTGAACAAAGACGCAGACAAGACTACCAAGAAATGGTTGACAAGAGTGTTCGTTACAAGAGCAGATCATAGTGATGAGATGAATGAGATCAAAGAAGAGTACAATAACCTTTATGGTGAGACTTTGGCTCAAAGAATCCAAGAGAAGATAAAAGGGAACTACAGAGATTTCTTGCTCACACTTCTCTCCAAATCCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0030054 GO:0033993 GO:0042221 GO:0050896 GO:0055044 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

319

Amino Acids

36.22

Weight (kDa)

6.88

Isoelectric Point (pI)

28.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	73 - 138	1.4e-10	Annexin
Annexin	PF00191	242 - 297	3.8e-08	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38750 AT2G38750
fragaria_vesca	FvH4_7g02660 FvH4_7g02660 FvH4_7g02660
malus_domestica	MD02G1291200.v1.1 MD07G1035400.v1.1
prunus_persica	Prupe.2G031800_v2.0.a1
pyrus_communis	pycom02g24610 pycom07g02480
rosa_chinensis	RchiOBHm_Chr1g0321341
rosa_laevigata	RLG00000030427
rosa_multiflora	Rmu_sc0000960.1_g000008 Rmu_sc0000960.1_g000009
rosa_roxburghii	Rroxscaffold_160G00433980 Rroxscaffold_4G00327600 Rroxscaffold_4G00327810
rosa_rugosa	Rorug01G0032300 Rorug01G0033000
rosa_samantha	Rh1AG044700 Rh1BG042100 Rh1BG042900 Rh1CG047100 Rh1CG047500 Rh1DG051600
rosa_wichuraiana	Rw1G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	406, 792
AciI	CCGC	2 cut(s)	223, 236
AclWI	GGATC	1 cut(s)	366
AcuI	CTGAAG	2 cut(s)	54, 537
AfaI	GTAC	1 cut(s)	860
AfiI	CCNNNNNNNGG	2 cut(s)	406, 792
AgsI	TTSAA	3 cut(s)	155, 229, 298
AjiI	CACGTC	1 cut(s)	430
AluBI	AGCT	7 cut(s)	19, 47, 170, 211, 293, 314, 380
AluI	AGCT	7 cut(s)	19, 47, 170, 211, 293, 314, 380
Alw21I	GWGCWC	2 cut(s)	21, 373
Alw26I	GTCTC	3 cut(s)	340, 762, 872
Alw44I	GTGCAC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	366
Ama87I	CYCGRG	1 cut(s)	14
ApaLI	GTGCAC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	4 cut(s)	253, 295, 508, 887
AvaI	CYCGRG	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	373
BanII	GRGCYC	2 cut(s)	21, 465
BauI	CACGAG	1 cut(s)	464
BbsI	GAAGAC	2 cut(s)	420, 678
Bbv12I	GWGCWC	2 cut(s)	21, 373
BbvCI	CCTCAGC	2 cut(s)	354, 441
BccI	CCATC	2 cut(s)	46, 47
BceAI	ACGGC	1 cut(s)	551
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	3 cut(s)	340, 762, 872
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	1 cut(s)	919
Bme18I	GGWCC	1 cut(s)	437
BmeT110I	CYCGRG	1 cut(s)	14
BmgBI	CACGTC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	437
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	4 cut(s)	262, 265, 511, 742
BmuI	ACTGGG	1 cut(s)	101
BpiI	GAAGAC	2 cut(s)	420, 678
Bpu10I	CCTNAGC	2 cut(s)	354, 441
BpuEI	CTTGAG	2 cut(s)	191, 233
BsaAI	YACGTR	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	340
BsaJI	CCNNGG	4 cut(s)	260, 364, 433, 567
BsaXI	ACNNNNNCTCC	2 cut(s)	603, 633
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 792
Bse118I	RCCGGY	1 cut(s)	724
Bse1I	ACTGG	1 cut(s)	96
Bse3DI	GCAATG	2 cut(s)	258, 417
BseDI	CCNNGG	4 cut(s)	260, 364, 433, 567
BseGI	GGATG	5 cut(s)	57, 256, 508, 583, 757
BseLI	CCNNNNNNNGG	2 cut(s)	406, 792
BseMI	GCAATG	2 cut(s)	258, 417
BseMII	CTCAG	3 cut(s)	57, 345, 455
BseNI	ACTGG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	47
BsiHKAI	GWGCWC	2 cut(s)	21, 373
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	725
BslI	CCNNNNNNNGG	2 cut(s)	406, 792
BsmAI	GTCTC	3 cut(s)	340, 762, 872
BsmBI	CGTCTC	1 cut(s)	762
BsmI	GAATGC	1 cut(s)	79
Bso31I	GGTCTC	1 cut(s)	340
BsoBI	CYCGRG	1 cut(s)	14
Bsp1286I	GDGCHC	3 cut(s)	21, 373, 465
Bsp143I	GATC	5 cut(s)	187, 358, 661, 823, 846
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	2 cut(s)	223, 236
BspCNI	CTCAG	3 cut(s)	56, 346, 454
BspHI	TCATGA	1 cut(s)	184
BspPI	GGATC	1 cut(s)	366
BspQI	GCTCTTC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	340
BsrDI	GCAATG	2 cut(s)	258, 417
BsrFI	RCCGGY	1 cut(s)	724
BsrI	ACTGG	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	724
BssECI	CCNNGG	4 cut(s)	260, 364, 433, 567
BssMI	GATC	5 cut(s)	187, 358, 661, 823, 846
BssSI	CACGAG	1 cut(s)	464
BssT1I	CCWWGG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	464
Bst4CI	ACNGT	1 cut(s)	437
Bst6I	CTCTTC	4 cut(s)	12, 398, 696, 849
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	5 cut(s)	43, 354, 441, 525, 681
BstDSI	CCRYGG	3 cut(s)	260, 433, 567
BstF5I	GGATG	5 cut(s)	57, 256, 508, 583, 757
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	5 cut(s)	190, 361, 664, 826, 849
BstMAI	GTCTC	3 cut(s)	340, 762, 872
BstMBI	GATC	5 cut(s)	187, 358, 661, 823, 846
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 377, 451, 460
BstSFI	CTRYAG	1 cut(s)	919
BstSLI	GKGCMC	1 cut(s)	373
BstV2I	GAAGAC	2 cut(s)	420, 678
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BtgI	CCRYGG	3 cut(s)	260, 433, 567
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	5 cut(s)	57, 256, 508, 583, 757
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	3 cut(s)	30, 89, 549
Cac8I	GCNNGC	1 cut(s)	136
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	1 cut(s)	447
Cfr10I	RCCGGY	1 cut(s)	724
Cfr13I	GGNCC	1 cut(s)	437
CseI	GACGC	2 cut(s)	744, 779
Csp6I	GTAC	1 cut(s)	859
CviAII	CATG	3 cut(s)	185, 261, 339
CviQI	GTAC	1 cut(s)	859
DdeI	CTNAG	5 cut(s)	43, 354, 441, 525, 681
DpnI	GATC	5 cut(s)	189, 360, 663, 825, 848
DpnII	GATC	5 cut(s)	187, 358, 661, 823, 846
Eam1104I	CTCTTC	4 cut(s)	12, 398, 696, 849
EarI	CTCTTC	4 cut(s)	12, 398, 696, 849
Ecl136II	GAGCTC	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	260
Eco24I	GRGCYC	2 cut(s)	21, 465
Eco31I	GGTCTC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	437
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	2 cut(s)	54, 537
Eco88I	CYCGRG	1 cut(s)	14
EcoICRI	GAGCTC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	260
EcoT22I	ATGCAT	2 cut(s)	79, 258
EcoT38I	GRGCYC	2 cut(s)	21, 465
ErhI	CCWWGG	1 cut(s)	260
Esp3I	CGTCTC	1 cut(s)	762
FaeI	CATG	3 cut(s)	188, 264, 342
FaiI	YATR	7 cut(s)	114, 186, 262, 340, 477, 828, 873
FatI	CATG	3 cut(s)	184, 260, 338
FauI	CCCGC	1 cut(s)	230
FbaI	TGATCA	1 cut(s)	187
FokI	GGATG	5 cut(s)	64, 243, 515, 590, 764
FriOI	GRGCYC	2 cut(s)	21, 465
FspBI	CTAG	1 cut(s)	533
GlaI	GCGC	1 cut(s)	446
GsaI	CCCAGC	1 cut(s)	51
HapII	CCGG	1 cut(s)	725
HgaI	GACGC	2 cut(s)	744, 779
HhaI	GCGC	1 cut(s)	447
Hin1II	CATG	3 cut(s)	188, 264, 342
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HincII	GTYRAC	1 cut(s)	798
HindII	GTYRAC	1 cut(s)	798
HindIII	AAGCTT	4 cut(s)	209, 291, 312, 378
HinfI	GANTC	3 cut(s)	506, 529, 894
HpaII	CCGG	1 cut(s)	725
HphI	GGTGA	4 cut(s)	253, 295, 508, 887
Hpy166II	GTNNAC	3 cut(s)	371, 433, 798
Hpy188I	TCNGA	5 cut(s)	200, 520, 661, 762, 955
Hpy188III	TCNNGA	3 cut(s)	14, 185, 466
Hpy8I	GTNNAC	3 cut(s)	371, 433, 798
HpyAV	CCTTC	3 cut(s)	479, 493, 568
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	2 cut(s)	373, 429
HpyCH4V	TGCA	5 cut(s)	77, 256, 275, 342, 371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 377, 451, 460
HpyF3I	CTNAG	5 cut(s)	43, 354, 441, 525, 681
HpySE526I	ACGT	2 cut(s)	373, 429
Hsp92II	CATG	3 cut(s)	188, 264, 342
HspAI	GCGC	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	5 cut(s)	187, 358, 661, 823, 846
LguI	GCTCTTC	1 cut(s)	12
LpnPI	CCDG	4 cut(s)	33, 77, 540, 738
LweI	GCATC	4 cut(s)	262, 265, 511, 742
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	2 cut(s)	373, 429
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	5 cut(s)	189, 360, 663, 825, 848
MboI	GATC	5 cut(s)	187, 358, 661, 823, 846
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	3 cut(s)	21, 373, 465
MluCI	AATT	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	646
Mph1103I	ATGCAT	2 cut(s)	79, 258
MseI	TTAA	1 cut(s)	642
MslI	CAYNNNNRTG	1 cut(s)	831
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	1 cut(s)	725
Mva1269I	GAATGC	1 cut(s)	79
MwoI	GCNNNNNNNGC	4 cut(s)	44, 377, 451, 460
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	5 cut(s)	187, 358, 661, 823, 846
NlaIII	CATG	3 cut(s)	188, 264, 342
NsiI	ATGCAT	2 cut(s)	79, 258
PaeR7I	CTCGAG	1 cut(s)	14
PagI	TCATGA	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	12
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	3 cut(s)	506, 529, 894
PflMI	CCANNNNNTGG	2 cut(s)	406, 792
Ppu21I	YACGTR	1 cut(s)	374
Psp124BI	GAGCTC	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	358
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	1 cut(s)	860
RsaNI	GTAC	1 cut(s)	859
RseI	CAYNNNNRTG	1 cut(s)	831
SacI	GAGCTC	1 cut(s)	21
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	642
Sau3AI	GATC	5 cut(s)	187, 358, 661, 823, 846
Sau96I	GGNCC	1 cut(s)	437
SduI	GDGCHC	3 cut(s)	21, 373, 465
SfaNI	GCATC	4 cut(s)	262, 265, 511, 742
SfcI	CTRYAG	1 cut(s)	919
Sfr274I	CTCGAG	1 cut(s)	14
SinI	GGWCC	1 cut(s)	437
SlaI	CTCGAG	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	831
SmlI	CTYRAG	3 cut(s)	14, 206, 212
SmoI	CTYRAG	3 cut(s)	14, 206, 212
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	2 cut(s)	223, 236
SspMI	CTAG	1 cut(s)	533
SstI	GAGCTC	1 cut(s)	21
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	2 cut(s)	376, 432
TaqI	TCGA	3 cut(s)	15, 21, 396
TasI	AATT	1 cut(s)	119
TatI	WGTACW	1 cut(s)	858
TfiI	GAWTC	3 cut(s)	506, 529, 894
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	3 cut(s)	37, 96, 549
TspDTI	ATGAA	3 cut(s)	605, 714, 854
TspRI	CASTG	3 cut(s)	37, 96, 549
Van91I	CCANNNNNTGG	2 cut(s)	406, 792
VneI	GTGCAC	1 cut(s)	369
VpaK11BI	GGWCC	1 cut(s)	437
XhoI	CTCGAG	1 cut(s)	14
XspI	CTAG	1 cut(s)	533
Zsp2I	ATGCAT	2 cut(s)	79, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.