Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006582

Physical Location & Seq

Genomic Coordinates Reverse (-)

61332280 .. 61334832

Gene Structure 2553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030427

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTCTCACTGATGAGTTGAAGACTCTCAACAACGCTTTCTCAGGGCTTGGAGTTGATGAGAAGTCATTGATATCAATATTGGGAAACTCGCATCCTGAAGAGAGGAAATGTTTCAGGAAAGGAACTCCCCATCTTTTCAAAGAGGATGAACGCCTCTTTGAGAGATGGAACGATGACCGTGTCAGACTTCTCAAGCATGAATTCATGCGCTTTAAGAATGCTGTGGTGTTATGGGCTATGCATCCATGGGAAAGAGATGCTCGCTTGGTGAAGGAGGCTTTGAAGAAAGGGCCAGAAGTCTATGGTGTCATTGTAGAGATTGCATGCACTAGATCCTCAGAAGAGCTATTAGGAGCTAGAAAGGCCTACCATTCCCTCTTTGACCACTCCATGGAAGAAGATGTTGCCTACCACATTGATGGCCCCGAAAGCAAGCTCTTGGTTGCACTTGTTAGTGCCTATAGGTATGAAGGAGCAAAGGTTAAAGATGACACCGCAAAAACTGAGGCCCAAACACTCTCTCATGCCATTAAGAATGCAGATAAGACAAACCCCATCGAAGATGATGAGGTGATTAGGATACTATCAACAAGGAGCAAGGCCCATCTCCAGGTAGTATATAAACACTACAAGGAGATTTCTGGCCAGAACATCTATGAGGATCTTGATGCTGCTTTGAGGTTAAAAGAGACGGTGCAATGCCTATGTACTCCTCAGACATATTTCAGCAAGGTGCTGGAATTGGCATTGAGGAATGATGTGGATAAGAACACCAAAAAGGGACTGACTAGAGTAATTGTGACCCGAGCTGACACAGATATGAAAGAGATCAAAGAGGATTACGAGAACCAATATGGAGTTTCTCTATCCAATAAAATTGAAGAGACAGCTAATGGGAACTATAGGGATTTCTTGCTTACCTTGGTTGCAAGGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0030054 GO:0033993 GO:0042221 GO:0050896 GO:0055044 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

314

Amino Acids

35.92

Weight (kDa)

6.24

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	86 - 151	2.6e-08	Annexin
Annexin	PF00191	171 - 226	8.1e-09	Annexin
Annexin	PF00191	261 - 309	5.5e-09	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38750 AT2G38750
fragaria_vesca	FvH4_7g02660 FvH4_7g02660 FvH4_7g02660
malus_domestica	MD02G1291200.v1.1 MD07G1035400.v1.1
prunus_persica	Prupe.2G031800_v2.0.a1
pyrus_communis	pycom02g24610 pycom07g02480
rosa_chinensis	RchiOBHm_Chr1g0321341
rosa_laevigata	RLG00000030427
rosa_multiflora	Rmu_sc0000960.1_g000008 Rmu_sc0000960.1_g000009
rosa_roxburghii	Rroxscaffold_160G00433980 Rroxscaffold_4G00327600 Rroxscaffold_4G00327810
rosa_rugosa	Rorug01G0032300 Rorug01G0033000
rosa_samantha	Rh1AG044700 Rh1BG042100 Rh1BG042900 Rh1CG047100 Rh1CG047500 Rh1DG051600
rosa_wichuraiana	Rw1G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	394
AciI	CCGC	1 cut(s)	498
AclWI	GGATC	2 cut(s)	330, 672
AcoI	YGGCCR	1 cut(s)	646
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	712
AfiI	CCNNNNNNNGG	2 cut(s)	394, 613
AgsI	TTSAA	4 cut(s)	22, 142, 286, 884
AjnI	CCWGG	1 cut(s)	612
AluBI	AGCT	5 cut(s)	349, 359, 439, 812, 893
AluI	AGCT	5 cut(s)	349, 359, 439, 812, 893
Alw26I	GTCTC	2 cut(s)	686, 881
AlwI	GGATC	2 cut(s)	330, 672
Ama87I	CYCGRG	1 cut(s)	807
AoxI	GGCC	6 cut(s)	293, 366, 424, 510, 603, 646
ApeKI	GCWGC	1 cut(s)	674
ApoI	RAATTY	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	5 cut(s)	293, 425, 511, 604, 936
AsuHPI	GGTGA	2 cut(s)	283, 586
AvaI	CYCGRG	1 cut(s)	807
AvaII	GGWCC	1 cut(s)	936
BalI	TGGCCA	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	661
BccI	CCATC	5 cut(s)	141, 162, 416, 566, 615
BciT130I	CCWGG	1 cut(s)	614
BciVI	GTATCC	1 cut(s)	576
BcoDI	GTCTC	2 cut(s)	686, 881
BfaI	CTAG	4 cut(s)	333, 360, 792, 940
BfmI	CTRYAG	2 cut(s)	463, 904
BfuI	GTATCC	1 cut(s)	576
BisI	GCNGC	1 cut(s)	675
BlsI	GCNGC	1 cut(s)	676
Bme1390I	CCNGG	1 cut(s)	614
Bme18I	GGWCC	1 cut(s)	936
BmeT110I	CYCGRG	1 cut(s)	807
BmgT120I	GGNCC	5 cut(s)	293, 425, 511, 604, 936
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	614
BmsI	GCATC	4 cut(s)	103, 250, 253, 661
BpiI	GAAGAC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	596
BpuEI	CTTGAG	1 cut(s)	179
BsaJI	CCNNGG	3 cut(s)	248, 393, 924
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 613
Bse3DI	GCAATG	1 cut(s)	707
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	3 cut(s)	248, 393, 924
BseGI	GGATG	3 cut(s)	94, 154, 244
BseLI	CCNNNNNNNGG	2 cut(s)	394, 613
BseMI	GCAATG	1 cut(s)	707
BseMII	CTCAG	4 cut(s)	57, 354, 498, 731
BseRI	GAGGAG	1 cut(s)	705
BseXI	GCAGC	1 cut(s)	661
BshFI	GGCC	6 cut(s)	295, 368, 426, 512, 605, 648
BsiHKCI	CYCGRG	1 cut(s)	807
BslFI	GGGAC	1 cut(s)	798
BslI	CCNNNNNNNGG	2 cut(s)	394, 613
BsmAI	GTCTC	2 cut(s)	686, 881
BsmBI	CGTCTC	1 cut(s)	686
BsmFI	GGGAC	1 cut(s)	798
BsmI	GAATGC	2 cut(s)	226, 544
BsnI	GGCC	6 cut(s)	295, 368, 426, 512, 605, 648
BsoBI	CYCGRG	1 cut(s)	807
Bsp143I	GATC	3 cut(s)	335, 664, 831
Bsp19I	CCATGG	2 cut(s)	248, 393
BspACI	CCGC	1 cut(s)	498
BspANI	GGCC	6 cut(s)	295, 368, 426, 512, 605, 648
BspCNI	CTCAG	4 cut(s)	56, 353, 499, 730
BspLI	GGNNCC	1 cut(s)	427
BspPI	GGATC	2 cut(s)	330, 672
BspQI	GCTCTTC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	707
BssECI	CCNNGG	3 cut(s)	248, 393, 924
BssMI	GATC	3 cut(s)	335, 664, 831
BssT1I	CCWWGG	3 cut(s)	248, 393, 924
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	2 cut(s)	182, 697
Bst6I	CTCTTC	3 cut(s)	96, 339, 879
BstC8I	GCNNGC	3 cut(s)	265, 328, 437
BstDEI	CTNAG	4 cut(s)	43, 340, 507, 717
BstDSI	CCRYGG	2 cut(s)	248, 393
BstF5I	GGATG	3 cut(s)	94, 154, 244
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	3 cut(s)	338, 667, 834
BstMAI	GTCTC	2 cut(s)	686, 881
BstMBI	GATC	3 cut(s)	335, 664, 831
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 432
BstNI	CCWGG	1 cut(s)	614
BstNSI	RCATGY	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	612
BstSFI	CTRYAG	2 cut(s)	463, 904
BstV1I	GCAGC	1 cut(s)	661
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	2 cut(s)	335, 664
BstXI	CCANNNNNNTGG	1 cut(s)	422
BstYI	RGATCY	2 cut(s)	335, 664
BsuI	GTATCC	1 cut(s)	576
BsuRI	GGCC	6 cut(s)	295, 368, 426, 512, 605, 648
BtgI	CCRYGG	2 cut(s)	248, 393
BtsCI	GGATG	3 cut(s)	94, 154, 244
BtsIMutI	CAGTG	1 cut(s)	9
Cac8I	GCNNGC	3 cut(s)	265, 328, 437
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	5 cut(s)	293, 425, 511, 604, 936
Csp6I	GTAC	1 cut(s)	711
CviAII	CATG	6 cut(s)	200, 208, 249, 327, 394, 527
CviQI	GTAC	1 cut(s)	711
DdeI	CTNAG	4 cut(s)	43, 340, 507, 717
DpnI	GATC	3 cut(s)	337, 666, 833
DpnII	GATC	3 cut(s)	335, 664, 831
EaeI	YGGCCR	1 cut(s)	646
Eam1104I	CTCTTC	3 cut(s)	96, 339, 879
EarI	CTCTTC	3 cut(s)	96, 339, 879
Eco130I	CCWWGG	3 cut(s)	248, 393, 924
Eco147I	AGGCCT	1 cut(s)	368
Eco32I	GATATC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	936
Eco57I	CTGAAG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	807
EcoO109I	RGGNCCY	1 cut(s)	936
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	612
EcoRV	GATATC	1 cut(s)	75
EcoT14I	CCWWGG	3 cut(s)	248, 393, 924
EcoT22I	ATGCAT	1 cut(s)	246
ErhI	CCWWGG	3 cut(s)	248, 393, 924
Esp3I	CGTCTC	1 cut(s)	686
FaeI	CATG	6 cut(s)	203, 211, 252, 330, 397, 530
FaqI	GGGAC	1 cut(s)	798
FatI	CATG	6 cut(s)	199, 207, 248, 326, 393, 526
Fnu4HI	GCNGC	1 cut(s)	675
FokI	GGATG	3 cut(s)	81, 161, 231
Fsp4HI	GCNGC	1 cut(s)	675
FspBI	CTAG	4 cut(s)	333, 360, 792, 940
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	1 cut(s)	675
GsuI	CTGGAG	1 cut(s)	596
HaeIII	GGCC	6 cut(s)	295, 368, 426, 512, 605, 648
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	6 cut(s)	203, 211, 252, 330, 397, 530
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	25
HphI	GGTGA	2 cut(s)	283, 586
Hpy188I	TCNGA	3 cut(s)	188, 343, 720
Hpy188III	TCNNGA	3 cut(s)	98, 118, 668
HpyAV	CCTTC	2 cut(s)	268, 467
HpyCH4III	ACNGT	2 cut(s)	182, 697
HpyCH4V	TGCA	7 cut(s)	244, 326, 330, 449, 542, 700, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 432
HpyF3I	CTNAG	4 cut(s)	43, 340, 507, 717
Hsp92II	CATG	6 cut(s)	203, 211, 252, 330, 397, 530
HspAI	GCGC	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	335, 664, 831
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	3 cut(s)	356, 476, 597
LpnPI	CCDG	9 cut(s)	30, 103, 111, 309, 599, 626, 630, 662, 725
Lsp1109I	GCAGC	1 cut(s)	661
LweI	GCATC	4 cut(s)	103, 250, 253, 661
MaeI	CTAG	4 cut(s)	333, 360, 792, 940
MaeIII	GTNAC	1 cut(s)	802
MalI	GATC	3 cut(s)	337, 666, 833
MboI	GATC	3 cut(s)	335, 664, 831
MboII	GAAGA	8 cut(s)	34, 113, 298, 356, 410, 413, 575, 896
MflI	RGATCY	2 cut(s)	335, 664
MlsI	TGGCCA	1 cut(s)	648
MluCI	AATT	4 cut(s)	203, 743, 798, 879
MluNI	TGGCCA	1 cut(s)	648
MlyI	GAGTC	1 cut(s)	19
Mox20I	TGGCCA	1 cut(s)	648
Mph1103I	ATGCAT	1 cut(s)	246
MroXI	GAANNNNTTC	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	648
MseI	TTAA	4 cut(s)	216, 486, 534, 686
MslI	CAYNNNNRTG	2 cut(s)	420, 821
Msp20I	TGGCCA	1 cut(s)	648
MspR9I	CCNGG	1 cut(s)	614
Mva1269I	GAATGC	2 cut(s)	226, 544
MvaI	CCWGG	1 cut(s)	614
MwoI	GCNNNNNNNGC	2 cut(s)	365, 432
NcoI	CCATGG	2 cut(s)	248, 393
NdeII	GATC	3 cut(s)	335, 664, 831
NlaIII	CATG	6 cut(s)	203, 211, 252, 330, 397, 530
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	802
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	1 cut(s)	330
PaeI	GCATGC	1 cut(s)	330
PceI	AGGCCT	1 cut(s)	368
PciSI	GCTCTTC	1 cut(s)	339
PctI	GAATGC	2 cut(s)	226, 544
PdmI	GAANNNNTTC	1 cut(s)	113
PflFI	GACNNNGTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	676
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	936
Psp5II	RGGWCCY	1 cut(s)	936
Psp6I	CCWGG	1 cut(s)	612
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	5 cut(s)	293, 425, 511, 604, 936
PspPPI	RGGWCCY	1 cut(s)	936
PsuI	RGATCY	2 cut(s)	335, 664
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
RseI	CAYNNNNRTG	2 cut(s)	420, 821
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	4 cut(s)	216, 486, 534, 686
SatI	GCNGC	1 cut(s)	675
Sau3AI	GATC	3 cut(s)	335, 664, 831
Sau96I	GGNCC	5 cut(s)	293, 425, 511, 604, 936
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	614
SfaNI	GCATC	4 cut(s)	103, 250, 253, 661
SfcI	CTRYAG	2 cut(s)	463, 904
SinI	GGWCC	1 cut(s)	936
SmiMI	CAYNNNNRTG	2 cut(s)	420, 821
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SphI	GCATGC	1 cut(s)	330
Sse9I	AATT	4 cut(s)	203, 743, 798, 879
SseBI	AGGCCT	1 cut(s)	368
SsiI	CCGC	1 cut(s)	498
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	4 cut(s)	333, 360, 792, 940
StuI	AGGCCT	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	612
StyI	CCWWGG	3 cut(s)	248, 393, 924
TaaI	ACNGT	2 cut(s)	182, 697
TaqI	TCGA	1 cut(s)	561
TasI	AATT	4 cut(s)	203, 743, 798, 879
TatI	WGTACW	1 cut(s)	710
Tru1I	TTAA	4 cut(s)	216, 486, 534, 686
Tru9I	TTAA	4 cut(s)	216, 486, 534, 686
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	802
TseI	GCWGC	1 cut(s)	674
Tsp45I	GTSAC	1 cut(s)	802
TspDTI	ATGAA	5 cut(s)	165, 196, 216, 486, 839
TspRI	CASTG	1 cut(s)	16
Tth111I	GACNNNGTC	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	936
XapI	RAATTY	1 cut(s)	203
XceI	RCATGY	1 cut(s)	330
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	4 cut(s)	333, 360, 792, 940
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.