Rh1CG047500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006582
Physical Location & Seq
Forward (+)
8895305 .. 8914311
19007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG047500.1

Sequence Viewer

Length: 369 bp
ATGGTCAACTTACTCTCCCCGGCGCCGCCCTCGTCCTGCCCTCCTGCCGCACCAGATCCCACCCCTCCAGCAATCGCACCACCAGCCTCACCTCGTACTTCCTCGACATACCTCCTCATATTCTCATACTACCCTCCAGGCAGTTGTAACAAAGTTTCATCTTCTAGCTGTTTAAAATATGCTTGCTATCAAAACAGTATCAGGCCTGTGACTGACTCTTTCATCAAACATCCACAGCTATTGGTTGCAGTTGTGAGTAGGAATGAAGCACAGGATCTTGATGCTGATTTTGAGGTTAAAAGAGACGGTGCAGTGCCTATGTACTCAGACATATTTCAGCAAGGGGTTGAAAGTGGCATTGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.11

Weight (kDa)

4.8

Isoelectric Point (pI)

84.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AciI CCGC 2 cut(s) 26, 48
AclWI GGATC 2 cut(s) 50, 282
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 2 cut(s) 97, 323
AgsI TTSAA 1 cut(s) 350
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 2 cut(s) 168, 238
AluI AGCT 2 cut(s) 168, 238
Alw26I GTCTC 1 cut(s) 297
AlwI GGATC 2 cut(s) 50, 282
AoxI GGCC 1 cut(s) 203
AspLEI GCGC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 81
BanI GGYRCC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 138
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 297
BfaI CTAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 2 cut(s) 26, 48
BlsI GCNGC 2 cut(s) 27, 49
Bme1390I CCNGG 2 cut(s) 20, 138
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 2 cut(s) 20, 138
BmsI GCATC 1 cut(s) 271
BpmI CTGGAG 2 cut(s) 51, 120
BpuMI CCSGG 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 18
BsaXI ACNNNNNCTCC 1 cut(s) 29
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 104
BsgI GTGCAG 1 cut(s) 330
BshFI GGCC 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 297
BsmBI CGTCTC 1 cut(s) 297
BsnI GGCC 1 cut(s) 205
Bsp143I GATC 2 cut(s) 55, 274
BspACI CCGC 2 cut(s) 26, 48
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 338
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 2 cut(s) 50, 282
BspT107I GGYRCC 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 55, 274
BssNI GRCGYC 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 2 cut(s) 197, 308
BstACI GRCGYC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 1 cut(s) 325
BstF5I GGATG 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 2 cut(s) 58, 277
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 2 cut(s) 55, 274
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 18, 136
BstX2I RGATCY 2 cut(s) 55, 274
BstYI RGATCY 2 cut(s) 55, 274
BsuRI GGCC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 184
CfoI GCGC 1 cut(s) 25
Csp6I GTAC 2 cut(s) 96, 322
CspCI CAANNNNNGTGG 2 cut(s) 222, 257
CviJI RGCY 4 cut(s) 86, 168, 205, 238
CviKI_1 RGCY 4 cut(s) 86, 168, 205, 238
CviQI GTAC 2 cut(s) 96, 322
DdeI CTNAG 1 cut(s) 325
DinI GGCGCC 1 cut(s) 24
DpnI GATC 2 cut(s) 57, 276
DpnII GATC 2 cut(s) 55, 274
DraI TTTAAA 1 cut(s) 174
Eco147I AGGCCT 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 136
EgeI GGCGCC 1 cut(s) 24
EheI GGCGCC 1 cut(s) 24
Esp3I CGTCTC 1 cut(s) 297
FaiI YATR 6 cut(s) 109, 119, 127, 180, 320, 332
Fnu4HI GCNGC 2 cut(s) 26, 48
FokI GGATG 1 cut(s) 216
Fsp4HI GCNGC 2 cut(s) 26, 48
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 24
GluI GCNGC 2 cut(s) 26, 48
GsuI CTGGAG 2 cut(s) 51, 120
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 1 cut(s) 205
HapII CCGG 1 cut(s) 20
HhaI GCGC 1 cut(s) 25
Hin1I GRCGYC 1 cut(s) 23
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 1 cut(s) 215
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 81
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 1 cut(s) 7
HpyCH4III ACNGT 2 cut(s) 197, 308
HpyCH4V TGCA 2 cut(s) 248, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 325
Hsp92I GRCGYC 1 cut(s) 23
HspAI GCGC 1 cut(s) 23
KasI GGCGCC 1 cut(s) 22
Kzo9I GATC 2 cut(s) 55, 274
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 146, 208
MalI GATC 2 cut(s) 57, 276
MboI GATC 2 cut(s) 55, 274
MboII GAAGA 1 cut(s) 153
MflI RGATCY 2 cut(s) 55, 274
Mly113I GGCGCC 1 cut(s) 23
MlyI GAGTC 1 cut(s) 209
MseI TTAA 2 cut(s) 173, 297
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 2 cut(s) 20, 138
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 83
NarI GGCGCC 1 cut(s) 23
NciI CCSGG 1 cut(s) 20
NdeII GATC 2 cut(s) 55, 274
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 208
PceI AGGCCT 1 cut(s) 205
PkrI GCNGC 2 cut(s) 27, 49
PleI GAGTC 1 cut(s) 209
PluTI GGCGCC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 24
PsuI RGATCY 2 cut(s) 55, 274
RsaI GTAC 2 cut(s) 97, 323
RsaNI GTAC 2 cut(s) 96, 322
SaqAI TTAA 2 cut(s) 173, 297
SatI GCNGC 2 cut(s) 26, 48
Sau3AI GATC 2 cut(s) 55, 274
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 2 cut(s) 20, 138
SetI ASST 5 cut(s) 94, 114, 170, 240, 297
SfaNI GCATC 1 cut(s) 271
SfoI GGCGCC 1 cut(s) 24
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 2 cut(s) 26, 48
SspDI GGCGCC 1 cut(s) 22
SspMI CTAG 1 cut(s) 165
StuI AGGCCT 1 cut(s) 205
StyD4I CCNGG 2 cut(s) 18, 136
TaaI ACNGT 2 cut(s) 197, 308
TaqI TCGA 1 cut(s) 104
TatI WGTACW 1 cut(s) 321
TauI GCSGC 2 cut(s) 28, 50
Tru1I TTAA 2 cut(s) 173, 297
Tru9I TTAA 2 cut(s) 173, 297
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 3 cut(s) 147, 211, 279
TspRI CASTG 1 cut(s) 318
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.