Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006582

Physical Location & Seq

Genomic Coordinates Forward (+)

8286801 .. 8289946

Gene Structure 3146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG051600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCTCTCACTGATGAGTTGAAGACTCTCAACAACGCTTTCTCAGGGCTTGGAGTTGATGAGAAGTCATTGATATCAATATTGGGAAACTCGCATCCTGAGGAGAGGAAATGTTTCAGGAAAGGAACTCCCCATCTTTTCAAAGAGGATGAACGCCTCTTTGAGAGATGGAACGATGACCGTGTCAGACTTCTCAAGCATGAATTCATGCGCTTTAAGAATGCTGTGGTGTTATGGGCTATGCATCCATGGGAAAGAGATGCTCGCTTGGTGAAGGAGGCTTTGAAGAAAGGGCCAGAAGTCTATGGTGTTATTGTAGAGATTGCATGCACTAGATCCTCAGAAGAGCTATTAGGAGCTAGAAAGGCCTACCATTCCCTCTTTGACCACTCCATTGAAGAAGATGTTGCCTACCACATTGATGGCCCTGAAAGCAAGCTCTTGGTTGCACTTGTTAGTGCCTATAGGTATGAAGGAGCAAAGGTTAAAGATGACATCGCAAAATCTGAGGCACAAACACTCTCTCATGCCATTAAGAATGCAGATAAGACAAACCCCATCGAAGATGATGAGGTGATTAGGTTACTATCAACAAGGAGCAAGGCCCATCTCCAGGAAGTATATGAACAGTACAAGGAGATTTCTGGCCAGAACATCGATGAGGTATGTATTCGAAAATACAAAATGAACTCGAGTGGCAAAACATTTCAAGCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0030054 GO:0033993 GO:0042221 GO:0050896 GO:0055044 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

239

Amino Acids

27.38

Weight (kDa)

6.33

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	86 - 151	1.2e-08	Annexin
Annexin	PF00191	171 - 221	1.6e-06	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38750 AT2G38750
fragaria_vesca	FvH4_7g02660 FvH4_7g02660 FvH4_7g02660
malus_domestica	MD02G1291200.v1.1 MD07G1035400.v1.1
prunus_persica	Prupe.2G031800_v2.0.a1
pyrus_communis	pycom02g24610 pycom07g02480
rosa_chinensis	RchiOBHm_Chr1g0321341
rosa_laevigata	RLG00000030427
rosa_multiflora	Rmu_sc0000960.1_g000008 Rmu_sc0000960.1_g000009
rosa_roxburghii	Rroxscaffold_160G00433980 Rroxscaffold_4G00327600 Rroxscaffold_4G00327810
rosa_rugosa	Rorug01G0032300 Rorug01G0033000
rosa_samantha	Rh1AG044700 Rh1BG042100 Rh1BG042900 Rh1CG047100 Rh1CG047500 Rh1DG051600
rosa_wichuraiana	Rw1G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	330
AcoI	YGGCCR	1 cut(s)	646
AcsI	RAATTY	1 cut(s)	203
AfaI	GTAC	1 cut(s)	632
AfiI	CCNNNNNNNGG	1 cut(s)	613
AgsI	TTSAA	5 cut(s)	22, 142, 286, 398, 710
AjnI	CCWGG	1 cut(s)	612
AluBI	AGCT	4 cut(s)	349, 359, 439, 713
AluI	AGCT	4 cut(s)	349, 359, 439, 713
AlwI	GGATC	1 cut(s)	330
Ama87I	CYCGRG	1 cut(s)	691
AoxI	GGCC	5 cut(s)	293, 366, 424, 603, 646
ApoI	RAATTY	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	3 cut(s)	293, 425, 604
AsuHPI	GGTGA	2 cut(s)	283, 586
AsuII	TTCGAA	1 cut(s)	673
AvaI	CYCGRG	1 cut(s)	691
AxyI	CCTNAGG	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	29
BccI	CCATC	5 cut(s)	141, 162, 416, 566, 615
BciT130I	CCWGG	1 cut(s)	614
BfaI	CTAG	2 cut(s)	333, 360
BfmI	CTRYAG	1 cut(s)	463
Bme1390I	CCNGG	1 cut(s)	614
BmeT110I	CYCGRG	1 cut(s)	691
BmgT120I	GGNCC	3 cut(s)	293, 425, 604
BmrFI	CCNGG	1 cut(s)	614
BmsI	GCATC	3 cut(s)	103, 250, 253
BpiI	GAAGAC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	596
Bpu14I	TTCGAA	1 cut(s)	673
BpuEI	CTTGAG	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	657
BsaJI	CCNNGG	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	613
Bse21I	CCTNAGG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	614
BseCI	ATCGAT	1 cut(s)	657
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	3 cut(s)	94, 154, 244
BseLI	CCNNNNNNNGG	1 cut(s)	613
BseMII	CTCAG	4 cut(s)	57, 90, 354, 498
BseRI	GAGGAG	1 cut(s)	116
BshFI	GGCC	5 cut(s)	295, 368, 426, 605, 648
BshVI	ATCGAT	1 cut(s)	657
BsiHKCI	CYCGRG	1 cut(s)	691
BslI	CCNNNNNNNGG	1 cut(s)	613
BsmI	GAATGC	2 cut(s)	226, 544
BsnI	GGCC	5 cut(s)	295, 368, 426, 605, 648
BsoBI	CYCGRG	1 cut(s)	691
Bsp119I	TTCGAA	1 cut(s)	673
Bsp143I	GATC	1 cut(s)	335
Bsp19I	CCATGG	1 cut(s)	248
BspANI	GGCC	5 cut(s)	295, 368, 426, 605, 648
BspCNI	CTCAG	4 cut(s)	56, 91, 353, 499
BspDI	ATCGAT	1 cut(s)	657
BspPI	GGATC	1 cut(s)	330
BspQI	GCTCTTC	1 cut(s)	339
BspT104I	TTCGAA	1 cut(s)	673
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	2 cut(s)	182, 630
Bst6I	CTCTTC	1 cut(s)	339
BstBI	TTCGAA	1 cut(s)	673
BstC8I	GCNNGC	4 cut(s)	265, 328, 437, 715
BstDEI	CTNAG	4 cut(s)	43, 99, 340, 507
BstDSI	CCRYGG	1 cut(s)	248
BstF5I	GGATG	3 cut(s)	94, 154, 244
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	1 cut(s)	338
BstMBI	GATC	1 cut(s)	335
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 432
BstNI	CCWGG	1 cut(s)	614
BstNSI	RCATGY	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	612
BstSFI	CTRYAG	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	335
BstXI	CCANNNNNNTGG	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	335
Bsu15I	ATCGAT	1 cut(s)	657
Bsu36I	CCTNAGG	1 cut(s)	99
BsuRI	GGCC	5 cut(s)	295, 368, 426, 605, 648
BsuTUI	ATCGAT	1 cut(s)	657
BtgI	CCRYGG	1 cut(s)	248
BtgZI	GCGATG	1 cut(s)	481
BtsCI	GGATG	3 cut(s)	94, 154, 244
BtsIMutI	CAGTG	1 cut(s)	9
Cac8I	GCNNGC	4 cut(s)	265, 328, 437, 715
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	3 cut(s)	293, 425, 604
ClaI	ATCGAT	1 cut(s)	657
Csp6I	GTAC	1 cut(s)	631
CviAII	CATG	5 cut(s)	200, 208, 249, 327, 527
CviQI	GTAC	1 cut(s)	631
DdeI	CTNAG	4 cut(s)	43, 99, 340, 507
DpnI	GATC	1 cut(s)	337
DpnII	GATC	1 cut(s)	335
EaeI	YGGCCR	1 cut(s)	646
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	248
Eco147I	AGGCCT	1 cut(s)	368
Eco32I	GATATC	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	691
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	612
EcoRV	GATATC	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	248
EcoT22I	ATGCAT	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	5 cut(s)	203, 211, 252, 330, 530
FatI	CATG	5 cut(s)	199, 207, 248, 326, 526
FokI	GGATG	3 cut(s)	81, 161, 231
FspBI	CTAG	2 cut(s)	333, 360
GlaI	GCGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	596
HaeIII	GGCC	5 cut(s)	295, 368, 426, 605, 648
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	5 cut(s)	203, 211, 252, 330, 530
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	25
HphI	GGTGA	2 cut(s)	283, 586
Hpy188I	TCNGA	3 cut(s)	188, 343, 508
Hpy188III	TCNNGA	2 cut(s)	98, 118
HpyAV	CCTTC	2 cut(s)	268, 467
HpyCH4III	ACNGT	2 cut(s)	182, 630
HpyCH4V	TGCA	5 cut(s)	244, 326, 330, 449, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 432
HpyF3I	CTNAG	4 cut(s)	43, 99, 340, 507
Hsp92II	CATG	5 cut(s)	203, 211, 252, 330, 530
HspAI	GCGC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	335
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	3 cut(s)	356, 476, 597
LweI	GCATC	3 cut(s)	103, 250, 253
MaeI	CTAG	2 cut(s)	333, 360
MaeIII	GTNAC	1 cut(s)	582
MalI	GATC	1 cut(s)	337
MboI	GATC	1 cut(s)	335
MboII	GAAGA	6 cut(s)	34, 298, 356, 410, 413, 575
MflI	RGATCY	1 cut(s)	335
MlsI	TGGCCA	1 cut(s)	648
MluCI	AATT	1 cut(s)	203
MluNI	TGGCCA	1 cut(s)	648
MlyI	GAGTC	1 cut(s)	19
Mox20I	TGGCCA	1 cut(s)	648
Mph1103I	ATGCAT	1 cut(s)	246
MroXI	GAANNNNTTC	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	648
MseI	TTAA	3 cut(s)	216, 486, 534
MslI	CAYNNNNRTG	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	648
MspR9I	CCNGG	1 cut(s)	614
Mva1269I	GAATGC	2 cut(s)	226, 544
MvaI	CCWGG	1 cut(s)	614
MwoI	GCNNNNNNNGC	2 cut(s)	365, 432
NcoI	CCATGG	1 cut(s)	248
NdeII	GATC	1 cut(s)	335
NlaIII	CATG	5 cut(s)	203, 211, 252, 330, 530
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	1 cut(s)	330
NspV	TTCGAA	1 cut(s)	673
PaeI	GCATGC	1 cut(s)	330
PaeR7I	CTCGAG	1 cut(s)	691
PceI	AGGCCT	1 cut(s)	368
PciSI	GCTCTTC	1 cut(s)	339
PctI	GAATGC	2 cut(s)	226, 544
PdmI	GAANNNNTTC	1 cut(s)	113
PflFI	GACNNNGTC	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	612
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	612
PspGI	CCWGG	1 cut(s)	612
PspPI	GGNCC	3 cut(s)	293, 425, 604
PspXI	VCTCGAGB	1 cut(s)	691
PsuI	RGATCY	1 cut(s)	335
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	1 cut(s)	632
RsaNI	GTAC	1 cut(s)	631
RseI	CAYNNNNRTG	1 cut(s)	420
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	3 cut(s)	216, 486, 534
Sau3AI	GATC	1 cut(s)	335
Sau96I	GGNCC	3 cut(s)	293, 425, 604
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	614
SetI	ASST	9 cut(s)	351, 361, 441, 470, 486, 576, 584, 666, 715
SfaNI	GCATC	3 cut(s)	103, 250, 253
SfcI	CTRYAG	1 cut(s)	463
Sfr274I	CTCGAG	1 cut(s)	691
SfuI	TTCGAA	1 cut(s)	673
SlaI	CTCGAG	1 cut(s)	691
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	2 cut(s)	194, 691
SmoI	CTYRAG	2 cut(s)	194, 691
SphI	GCATGC	1 cut(s)	330
Sse9I	AATT	1 cut(s)	203
SseBI	AGGCCT	1 cut(s)	368
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	2 cut(s)	333, 360
StuI	AGGCCT	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	612
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	2 cut(s)	182, 630
TaqI	TCGA	4 cut(s)	561, 657, 673, 692
TasI	AATT	1 cut(s)	203
TatI	WGTACW	1 cut(s)	630
Tru1I	TTAA	3 cut(s)	216, 486, 534
Tru9I	TTAA	3 cut(s)	216, 486, 534
TscAI	CASTG	1 cut(s)	16
TspDTI	ATGAA	6 cut(s)	165, 196, 216, 486, 639, 701
TspRI	CASTG	1 cut(s)	16
Tth111I	GACNNNGTC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	203
XceI	RCATGY	1 cut(s)	330
XhoI	CTCGAG	1 cut(s)	691
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	2 cut(s)	333, 360
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.