Rh1BG042900

Annexin D4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0006582
Physical Location & Seq
Forward (+)
5672633 .. 5674494
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG042900.1

Sequence Viewer

Length: 390 bp
ATGCAATGTCCTCCTCGAGTGAGCATTCAAAAAGTGAACCATAGACCTGCCTCACTGCCATCAAGTGGTGAGGAGCTATTGGTTGCAGTTGTGAGTAGGAATGAAGGAGCACAGGTTAAAGATGACACCGCAAAAGCTGAGGCCCCAACATTTTCTCAAGCCATTAAGAATGCAGATAAGACGAACCCCATCGAAGATGTTGAGGTGATTAGGATACAATCAACAAGGAGTAAGGCTCATCTCCAGGAAGTATCTAAACACTACAAGGAGATTTCTGGCCACAACATCGATGAGGATCTTGATGCTGATTTTGAGGTTAAAAGAGACGGTGCAGTGCCTATGTACTCAGACATATTTCAGCAAGGTGTTGAAAGTGGCATTGAGGAATGA

Protein Analysis

129

Amino Acids

14.24

Weight (kDa)

4.98

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 53 - 104 2e-08 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 55
AccB7I CCANNNNNTGG 1 cut(s) 65
AciI CCGC 1 cut(s) 129
AclWI GGATC 1 cut(s) 303
AcoI YGGCCR 1 cut(s) 277
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 2 cut(s) 29, 371
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 2 cut(s) 76, 137
AluI AGCT 2 cut(s) 76, 137
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 1 cut(s) 303
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 2 cut(s) 141, 277
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 2 cut(s) 80, 217
AvaI CYCGRG 1 cut(s) 15
BalI TGGCCA 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 112
BbvCI CCTCAGC 1 cut(s) 138
BccI CCATC 2 cut(s) 67, 197
BciT130I CCWGG 1 cut(s) 245
BciVI GTATCC 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 318
BfuAI ACCTGC 1 cut(s) 55
BfuI GTATCC 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 245
BmeT110I CYCGRG 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 1 cut(s) 292
BplI GAGNNNNNCTC 2 cut(s) 220, 252
BpmI CTGGAG 1 cut(s) 227
Bpu10I CCTNAGC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 294
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 11
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 1 cut(s) 245
BseCI ATCGAT 1 cut(s) 288
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 2 cut(s) 129, 360
BseRI GAGGAG 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 351
BshFI GGCC 2 cut(s) 143, 279
BshVI ATCGAT 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 112
BsiHKCI CYCGRG 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 318
BsmBI CGTCTC 1 cut(s) 318
BsmI GAATGC 2 cut(s) 24, 175
BsnI GGCC 2 cut(s) 143, 279
BsoBI CYCGRG 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 1 cut(s) 129
BspANI GGCC 2 cut(s) 143, 279
BspCNI CTCAG 2 cut(s) 130, 359
BspDI ATCGAT 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 144
BspMI ACCTGC 1 cut(s) 55
BspPI GGATC 1 cut(s) 303
BsrDI GCAATG 1 cut(s) 11
BssMI GATC 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 329
BstDEI CTNAG 2 cut(s) 138, 346
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 1 cut(s) 295
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
Bsu15I ATCGAT 1 cut(s) 288
BsuI GTATCC 1 cut(s) 207
BsuRI GGCC 2 cut(s) 143, 279
BsuTUI ATCGAT 1 cut(s) 288
BtsI GCAGTG 2 cut(s) 53, 339
BtsIMutI CAGTG 2 cut(s) 53, 339
BveI ACCTGC 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 288
Csp6I GTAC 1 cut(s) 343
CviJI RGCY 6 cut(s) 76, 137, 143, 161, 236, 279
CviKI_1 RGCY 6 cut(s) 76, 137, 143, 161, 236, 279
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 2 cut(s) 138, 346
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 15
EcoO109I RGGNCCY 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 318
FaiI YATR 3 cut(s) 42, 341, 353
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 2 cut(s) 143, 279
HphI GGTGA 2 cut(s) 80, 217
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4V TGCA 4 cut(s) 4, 86, 173, 332
HpyF3I CTNAG 2 cut(s) 138, 346
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 2 cut(s) 73, 107
LpnPI CCDG 5 cut(s) 60, 98, 230, 257, 261
LweI GCATC 1 cut(s) 292
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 1 cut(s) 206
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 279
MluNI TGGCCA 1 cut(s) 279
MnlI CCTC 9 cut(s) 21, 24, 61, 64, 133, 196, 286, 307, 376
Mox20I TGGCCA 1 cut(s) 279
MscI TGGCCA 1 cut(s) 279
MseI TTAA 3 cut(s) 117, 165, 318
Msp20I TGGCCA 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 245
Mva1269I GAATGC 2 cut(s) 24, 175
MvaI CCWGG 1 cut(s) 245
NdeII GATC 1 cut(s) 295
NlaIV GGNNCC 1 cut(s) 144
PaeR7I CTCGAG 1 cut(s) 15
PctI GAATGC 2 cut(s) 24, 175
PflMI CCANNNNNTGG 1 cut(s) 65
PfoI TCCNGGA 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 142
PspXI VCTCGAGB 1 cut(s) 15
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SaqAI TTAA 3 cut(s) 117, 165, 318
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 112
SetI ASST 7 cut(s) 49, 78, 117, 139, 207, 318, 367
SfaNI GCATC 1 cut(s) 292
Sfr274I CTCGAG 1 cut(s) 15
SlaI CTCGAG 1 cut(s) 15
SmlI CTYRAG 2 cut(s) 15, 156
SmoI CTYRAG 2 cut(s) 15, 156
SsiI CCGC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 329
TaqI TCGA 3 cut(s) 16, 192, 288
TatI WGTACW 1 cut(s) 342
Tru1I TTAA 3 cut(s) 117, 165, 318
Tru9I TTAA 3 cut(s) 117, 165, 318
TscAI CASTG 2 cut(s) 60, 339
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 2 cut(s) 60, 339
Van91I CCANNNNNTGG 1 cut(s) 65
XhoI CTCGAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.