Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006582

Physical Location & Seq

Genomic Coordinates Reverse (-)

22750188 .. 22753143

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24610.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGACAATTATAACCTTTCGGGCTCATATATATTGCAGCATTTGTCAGAAGATCTCTACATCAACAGAATCAACACAAACGATGGCTCTTACTCCTGAGTTGCAAACTCTCACCAAGGCCTTCTCAGGACTTGGAGTTGATGAGAAGGCACTAGTAGCAACACTGGGAAAATCTCATCCTGAGGAAAGGCAATCCTTCAGGAAAGCAACTCCCCACTTTTTCAAGGTAGATGAACGTTCCTTTGAGCGCTGGGATGATCACCATGTCAAGCTTCTCAAGCATGAGTTCCTGCGTTTTAAGAATGCTGTGGTGCTATGGACAATGCATCCATGGGAAAGAGATGCTCGTTTGGCAAAGGAGGCCTTGAAAAAAGGTCCAGAATCATATGGTATTCTTGTTGAGATTGCATGCACTAGATCGTCCGAGGAGCTATTAGGAGCTAGGAAGGCTTACCATTCCCTCTTTGATCACTCCATTGAGGAAGATGTTGCCTACCACATTCATGGCCCTGAAGGCAAGCTCTTGGTTGCTCTTGTGAGTGCCTATAGGTATGAAGGATCAAAGGTTAAGGATGACACTGCAAAATCAGAGGCCAAAACACTTGTTAATGCCATTCAGCATGCCGATAAGAGGCATCCCAATGAAGATGATGAGGTGATCAGGATACTATCAACAAGGAGCAAGCCCCATCTCAAGGAAGTCTATAAACACTACAAGGAGATTTCTGGCCACAACATTGATGAGGATCTTGATCATGCTGTGAGGTTAAAAGAGACAGTACAATGCCTTTGTGCTCCTGAGAAATATTTCAGCAAGGTCTTGGAAGTTTCATTGAGAACTGATGTCCATAAGCATAGCAAAAAGGGATTGACGAGAGTAATTGTTACCCGAGCTGACTCGGACATGAGGGAGATCAAGGAGGAATTCAAGAACCACCACGGAGTCTCTTTAGTCGAGAAAATTGAAGAGATGGCTAATGGGAACTATAAGGATTTCCTACTCACCTTGCTTGCACGAGGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0030054 GO:0033993 GO:0042221 GO:0050896 GO:0055044 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

342

Amino Acids

39.05

Weight (kDa)

7.76

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38750 AT2G38750
fragaria_vesca	FvH4_7g02660 FvH4_7g02660 FvH4_7g02660
malus_domestica	MD02G1291200.v1.1 MD07G1035400.v1.1
prunus_persica	Prupe.2G031800_v2.0.a1
pyrus_communis	pycom02g24610 pycom07g02480
rosa_chinensis	RchiOBHm_Chr1g0321341
rosa_laevigata	RLG00000030427
rosa_multiflora	Rmu_sc0000960.1_g000008 Rmu_sc0000960.1_g000009
rosa_roxburghii	Rroxscaffold_160G00433980 Rroxscaffold_4G00327600 Rroxscaffold_4G00327810
rosa_rugosa	Rorug01G0032300 Rorug01G0033000
rosa_samantha	Rh1AG044700 Rh1BG042100 Rh1BG042900 Rh1CG047100 Rh1CG047500 Rh1DG051600
rosa_wichuraiana	Rw1G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AclI	AACGTT	1 cut(s)	235
AclWI	GGATC	2 cut(s)	565, 753
AcoI	YGGCCR	1 cut(s)	727
AcsI	RAATTY	1 cut(s)	923
AcuI	CTGAAG	2 cut(s)	181, 531
AfaI	GTAC	1 cut(s)	780
AfeI	AGCGCT	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	630, 694
AgsI	TTSAA	4 cut(s)	223, 367, 928, 965
AhlI	ACTAGT	1 cut(s)	151
AluBI	AGCT	5 cut(s)	271, 430, 440, 520, 893
AluI	AGCT	5 cut(s)	271, 430, 440, 520, 893
Alw21I	GWGCWC	1 cut(s)	796
Alw26I	GTCTC	2 cut(s)	767, 949
AlwI	GGATC	2 cut(s)	565, 753
Ama87I	CYCGRG	1 cut(s)	888
Aor51HI	AGCGCT	1 cut(s)	248
AoxI	GGCC	5 cut(s)	117, 360, 505, 591, 727
ApeKI	GCWGC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	923
Asp700I	GAANNNNTTC	1 cut(s)	806
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	374, 506
AsuHPI	GGTGA	4 cut(s)	103, 251, 667, 994
AvaI	CYCGRG	1 cut(s)	888
AvaII	GGWCC	1 cut(s)	374
AxyI	CCTNAGG	1 cut(s)	180
BalI	TGGCCA	1 cut(s)	729
BanII	GRGCYC	1 cut(s)	25
BauI	CACGAG	1 cut(s)	1014
Bbv12I	GWGCWC	1 cut(s)	796
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	3 cut(s)	76, 696, 964
BciVI	GTATCC	1 cut(s)	657
BclI	TGATCA	4 cut(s)	256, 466, 657, 751
BcoDI	GTCTC	2 cut(s)	767, 949
BcuI	ACTAGT	1 cut(s)	151
BfaI	CTAG	3 cut(s)	152, 414, 441
BfmI	CTRYAG	1 cut(s)	544
BfoI	RGCGCY	1 cut(s)	250
BfuI	GTATCC	1 cut(s)	657
BglI	GCCNNNNNGGC	1 cut(s)	513
BglII	AGATCT	1 cut(s)	51
BisI	GCNGC	1 cut(s)	37
BlsI	GCNGC	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	888
BmgT120I	GGNCC	2 cut(s)	374, 506
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	3 cut(s)	331, 334, 643
BmuI	ACTGGG	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	260, 677
BsaBI	GATNNNNATC	2 cut(s)	744, 750
BsaJI	CCNNGG	4 cut(s)	114, 329, 423, 937
Bsc4I	CCNNNNNNNGG	2 cut(s)	630, 694
Bse1I	ACTGG	1 cut(s)	168
Bse21I	CCTNAGG	1 cut(s)	180
Bse8I	GATNNNNATC	2 cut(s)	744, 750
BseDI	CCNNGG	4 cut(s)	114, 329, 423, 937
BseGI	GGATG	5 cut(s)	175, 259, 325, 577, 634
BseJI	GATNNNNATC	2 cut(s)	744, 750
BseLI	CCNNNNNNNGG	2 cut(s)	630, 694
BseMII	CTCAG	4 cut(s)	87, 138, 171, 789
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	249
BshFI	GGCC	5 cut(s)	119, 362, 507, 593, 729
BsiHKAI	GWGCWC	1 cut(s)	796
BsiHKCI	CYCGRG	1 cut(s)	888
BslI	CCNNNNNNNGG	2 cut(s)	630, 694
BsmAI	GTCTC	2 cut(s)	767, 949
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	5 cut(s)	119, 362, 507, 593, 729
BsoBI	CYCGRG	1 cut(s)	888
Bsp1286I	GDGCHC	2 cut(s)	25, 796
Bsp143I	GATC	9 cut(s)	51, 256, 416, 466, 557, 657, 745, 751, 912
Bsp19I	CCATGG	1 cut(s)	329
BspANI	GGCC	5 cut(s)	119, 362, 507, 593, 729
BspCNI	CTCAG	4 cut(s)	88, 137, 172, 790
BspPI	GGATC	2 cut(s)	565, 753
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	4 cut(s)	114, 329, 423, 937
BssMI	GATC	9 cut(s)	51, 256, 416, 466, 557, 657, 745, 751, 912
BssSI	CACGAG	1 cut(s)	1014
BssT1I	CCWWGG	2 cut(s)	114, 329
Bst2BI	CACGAG	1 cut(s)	1014
Bst4CI	ACNGT	1 cut(s)	778
Bst6I	CTCTTC	1 cut(s)	960
BstC8I	GCNNGC	5 cut(s)	409, 518, 621, 683, 1011
BstDEI	CTNAG	4 cut(s)	96, 124, 180, 798
BstDSI	CCRYGG	2 cut(s)	329, 937
BstF5I	GGATG	5 cut(s)	175, 259, 325, 577, 634
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	9 cut(s)	54, 259, 419, 469, 560, 660, 748, 754, 915
BstMAI	GTCTC	2 cut(s)	767, 949
BstMBI	GATC	9 cut(s)	51, 256, 416, 466, 557, 657, 745, 751, 912
BstMWI	GCNNNNNNNGC	6 cut(s)	155, 277, 350, 359, 446, 513
BstNSI	RCATGY	2 cut(s)	411, 623
BstSFI	CTRYAG	1 cut(s)	544
BstV1I	GCAGC	1 cut(s)	48
BstX2I	RGATCY	2 cut(s)	51, 745
BstXI	CCANNNNNNTGG	1 cut(s)	503
BstYI	RGATCY	2 cut(s)	51, 745
Bsu36I	CCTNAGG	1 cut(s)	180
BsuI	GTATCC	1 cut(s)	657
BsuRI	GGCC	5 cut(s)	119, 362, 507, 593, 729
BtgI	CCRYGG	2 cut(s)	329, 937
BtsCI	GGATG	5 cut(s)	175, 259, 325, 577, 634
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	2 cut(s)	161, 576
Cac8I	GCNNGC	5 cut(s)	409, 518, 621, 683, 1011
CfoI	GCGC	1 cut(s)	249
Cfr13I	GGNCC	2 cut(s)	374, 506
Csp6I	GTAC	1 cut(s)	779
CviAII	CATG	8 cut(s)	263, 281, 330, 408, 503, 620, 755, 904
CviQI	GTAC	1 cut(s)	779
DdeI	CTNAG	4 cut(s)	96, 124, 180, 798
DpnI	GATC	9 cut(s)	53, 258, 418, 468, 559, 659, 747, 753, 914
DpnII	GATC	9 cut(s)	51, 256, 416, 466, 557, 657, 745, 751, 912
EaeI	YGGCCR	1 cut(s)	727
Eam1104I	CTCTTC	1 cut(s)	960
EarI	CTCTTC	1 cut(s)	960
Eco130I	CCWWGG	2 cut(s)	114, 329
Eco147I	AGGCCT	2 cut(s)	119, 362
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	374
Eco47III	AGCGCT	1 cut(s)	248
Eco57I	CTGAAG	2 cut(s)	181, 531
Eco81I	CCTNAGG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	888
EcoRI	GAATTC	1 cut(s)	923
EcoT14I	CCWWGG	2 cut(s)	114, 329
EcoT22I	ATGCAT	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	2 cut(s)	114, 329
FaeI	CATG	8 cut(s)	266, 284, 333, 411, 506, 623, 758, 907
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FatI	CATG	8 cut(s)	262, 280, 329, 407, 502, 619, 754, 903
FauNDI	CATATG	1 cut(s)	385
FbaI	TGATCA	4 cut(s)	256, 466, 657, 751
Fnu4HI	GCNGC	1 cut(s)	37
FokI	GGATG	5 cut(s)	162, 266, 312, 584, 621
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	37
FspBI	CTAG	3 cut(s)	152, 414, 441
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	1 cut(s)	37
GsaI	CCCAGC	1 cut(s)	253
HaeII	RGCGCY	1 cut(s)	250
HaeIII	GGCC	5 cut(s)	119, 362, 507, 593, 729
HhaI	GCGC	1 cut(s)	249
Hin1II	CATG	8 cut(s)	266, 284, 333, 411, 506, 623, 758, 907
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	4 cut(s)	68, 380, 896, 942
HphI	GGTGA	4 cut(s)	103, 251, 667, 994
Hpy188I	TCNGA	4 cut(s)	48, 424, 589, 901
HpyAV	CCTTC	6 cut(s)	130, 139, 205, 439, 506, 548
HpyCH4III	ACNGT	1 cut(s)	778
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	7 cut(s)	36, 103, 325, 407, 411, 581, 1013
HpyF10VI	GCNNNNNNNGC	6 cut(s)	155, 277, 350, 359, 446, 513
HpyF3I	CTNAG	4 cut(s)	96, 124, 180, 798
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	8 cut(s)	266, 284, 333, 411, 506, 623, 758, 907
HspAI	GCGC	1 cut(s)	247
Ksp22I	TGATCA	4 cut(s)	256, 466, 657, 751
Kzo9I	GATC	9 cut(s)	51, 256, 416, 466, 557, 657, 745, 751, 912
LmnI	GCTCC	4 cut(s)	427, 437, 678, 799
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	3 cut(s)	331, 334, 643
MaeI	CTAG	3 cut(s)	152, 414, 441
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	883
MalI	GATC	9 cut(s)	53, 258, 418, 468, 559, 659, 747, 753, 914
MboI	GATC	9 cut(s)	51, 256, 416, 466, 557, 657, 745, 751, 912
MboII	GAAGA	4 cut(s)	61, 494, 656, 977
MflI	RGATCY	2 cut(s)	51, 745
MhlI	GDGCHC	2 cut(s)	25, 796
MlsI	TGGCCA	1 cut(s)	729
MluCI	AATT	4 cut(s)	6, 879, 923, 960
MluNI	TGGCCA	1 cut(s)	729
MlyI	GAGTC	2 cut(s)	890, 951
Mox20I	TGGCCA	1 cut(s)	729
Mph1103I	ATGCAT	1 cut(s)	327
MroXI	GAANNNNTTC	1 cut(s)	806
MscI	TGGCCA	1 cut(s)	729
MseI	TTAA	4 cut(s)	297, 567, 606, 767
MslI	CAYNNNNRTG	2 cut(s)	501, 639
Msp20I	TGGCCA	1 cut(s)	729
Mva1269I	GAATGC	1 cut(s)	307
MwoI	GCNNNNNNNGC	6 cut(s)	155, 277, 350, 359, 446, 513
NcoI	CCATGG	1 cut(s)	329
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	9 cut(s)	51, 256, 416, 466, 557, 657, 745, 751, 912
NlaIII	CATG	8 cut(s)	266, 284, 333, 411, 506, 623, 758, 907
NsiI	ATGCAT	1 cut(s)	327
NspI	RCATGY	2 cut(s)	411, 623
PaeI	GCATGC	2 cut(s)	411, 623
PceI	AGGCCT	2 cut(s)	119, 362
PctI	GAATGC	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	806
PfeI	GAWTC	2 cut(s)	68, 380
PkrI	GCNGC	1 cut(s)	38
PleI	GAGTC	2 cut(s)	890, 950
PpsI	GAGTC	2 cut(s)	890, 950
PsiI	TTATAA	1 cut(s)	11
Psp1406I	AACGTT	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	249
PspPI	GGNCC	2 cut(s)	374, 506
PsuI	RGATCY	2 cut(s)	51, 745
RsaI	GTAC	1 cut(s)	780
RsaNI	GTAC	1 cut(s)	779
RseI	CAYNNNNRTG	2 cut(s)	501, 639
SaqAI	TTAA	4 cut(s)	297, 567, 606, 767
SatI	GCNGC	1 cut(s)	37
Sau3AI	GATC	9 cut(s)	51, 256, 416, 466, 557, 657, 745, 751, 912
Sau96I	GGNCC	2 cut(s)	374, 506
SchI	GAGTC	2 cut(s)	890, 951
SduI	GDGCHC	2 cut(s)	25, 796
SfaNI	GCATC	3 cut(s)	331, 334, 643
SfcI	CTRYAG	1 cut(s)	544
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	2 cut(s)	501, 639
SmlI	CTYRAG	2 cut(s)	275, 692
SmoI	CTYRAG	2 cut(s)	275, 692
SpeI	ACTAGT	1 cut(s)	151
SphI	GCATGC	2 cut(s)	411, 623
Sse9I	AATT	4 cut(s)	6, 879, 923, 960
SseBI	AGGCCT	2 cut(s)	119, 362
SspI	AATATT	1 cut(s)	806
SspMI	CTAG	3 cut(s)	152, 414, 441
StuI	AGGCCT	2 cut(s)	119, 362
StyI	CCWWGG	2 cut(s)	114, 329
TaaI	ACNGT	1 cut(s)	778
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	954
TasI	AATT	4 cut(s)	6, 879, 923, 960
TatI	WGTACW	1 cut(s)	778
TfiI	GAWTC	2 cut(s)	68, 380
Tru1I	TTAA	4 cut(s)	297, 567, 606, 767
Tru9I	TTAA	4 cut(s)	297, 567, 606, 767
TscAI	CASTG	2 cut(s)	168, 583
TseI	GCWGC	1 cut(s)	36
TspDTI	ATGAA	5 cut(s)	246, 491, 567, 657, 819
TspGWI	ACGGA	1 cut(s)	954
TspRI	CASTG	2 cut(s)	168, 583
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	1 cut(s)	923
XceI	RCATGY	2 cut(s)	411, 623
XmnI	GAANNNNTTC	1 cut(s)	806
XspI	CTAG	3 cut(s)	152, 414, 441
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.