Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006582

Physical Location & Seq

Genomic Coordinates Reverse (-)

34695126 .. 34698941

Gene Structure 3816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1291200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCTCTTACTCCTGAGTTGCAAACTCTCACCAAGGCTTTCTCAGGACTTGGAGTTGATGAGAAGGCACTAGTAGCAACACTGGGAAAATCGCATCCTGAGGAAAGGCAATCCTTCAGGAAAGCAACTCCCCACTTTTTCAAGGTAGATGAACGTTCCTTTGAGCGCTGGGATGATCACCATGTAAAGCTTCTCAAGCATGAGTTCCTGCGTTTTAAGAATGCTGTGGTGCTATGGACAATGCATCCATGGGAAAGAGATGCTCGTTTGGCAAAGGAGGCCTTGAAAAAAGGTCCAGAATCATATGGTATTCTTGTTGAGATTGCATGCACTAGATCGTCCGAGGAGCTATTAGGAGCTAGGAAGGCTTACCATTCCCTCTTTGATCACTCCATTGAGGAAGATGTTGCCTACCACATTGATGGCCCTGAAGGCAAGCTCTTGGTTGCCCTTGTGAGTGCCTATAGGTATGAAGGATCAAAGGTTAAGGATGACACTGCAAAATCTGAGGCCAAAACACTTGTTAATGCCATTCAGCATGCCGATAAGAGGAATCCCAATGAAGATGATGAGGTGATCAGGATACTATCAACAAGGAGCAAGCCCCATCTCAAGGAAGTCTATAAACACTACAAGGAGATTTCTGGCCACAACATTGATGAGGATCTTGATCATGCTGTGAGGTTAAAAGAGACGGTGCAATGCCTATGTACTCCTGATAAATATTTCAGCAAGGTCTTGGAAGTTTCATTGAGAACTGATGTGCATAAGCATAGCAAAAAGGGATTGACCAGAGTAATTGTTACCCGAGCTGACTCGGACATGAGGGAGATCAAGGAGGAATTCAAGAACCACCACGGAGTCTCTTTAGTCGAGAAAATTGAAGAGATGGCTAATGGGAACTATAAGGATTTCCTACTCACCTTGCTTGCACGAGGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0030054 GO:0033993 GO:0042221 GO:0050896 GO:0055044 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

315

Amino Acids

35.98

Weight (kDa)

7.03

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	86 - 151	6.8e-08	Annexin
Annexin	PF00191	178 - 226	2.8e-08	Annexin
Annexin	PF00191	260 - 309	8.3e-09	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38750 AT2G38750
fragaria_vesca	FvH4_7g02660 FvH4_7g02660 FvH4_7g02660
malus_domestica	MD02G1291200.v1.1 MD07G1035400.v1.1
prunus_persica	Prupe.2G031800_v2.0.a1
pyrus_communis	pycom02g24610 pycom07g02480
rosa_chinensis	RchiOBHm_Chr1g0321341
rosa_laevigata	RLG00000030427
rosa_multiflora	Rmu_sc0000960.1_g000008 Rmu_sc0000960.1_g000009
rosa_roxburghii	Rroxscaffold_160G00433980 Rroxscaffold_4G00327600 Rroxscaffold_4G00327810
rosa_rugosa	Rorug01G0032300 Rorug01G0033000
rosa_samantha	Rh1AG044700 Rh1BG042100 Rh1BG042900 Rh1CG047100 Rh1CG047500 Rh1DG051600
rosa_wichuraiana	Rw1G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	154
AclWI	GGATC	2 cut(s)	484, 672
AcoI	YGGCCR	1 cut(s)	646
AcsI	RAATTY	1 cut(s)	842
AcuI	CTGAAG	2 cut(s)	100, 450
AfaI	GTAC	1 cut(s)	712
AfeI	AGCGCT	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	549, 613
AgsI	TTSAA	4 cut(s)	142, 286, 847, 884
AhlI	ACTAGT	1 cut(s)	70
AluBI	AGCT	5 cut(s)	190, 349, 359, 439, 812
AluI	AGCT	5 cut(s)	190, 349, 359, 439, 812
Alw26I	GTCTC	2 cut(s)	686, 868
AlwI	GGATC	2 cut(s)	484, 672
Ama87I	CYCGRG	1 cut(s)	807
Aor51HI	AGCGCT	1 cut(s)	167
AoxI	GGCC	4 cut(s)	279, 424, 510, 646
ApoI	RAATTY	1 cut(s)	842
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	293, 425
AsuHPI	GGTGA	4 cut(s)	22, 170, 586, 913
AvaI	CYCGRG	1 cut(s)	807
AvaII	GGWCC	1 cut(s)	293
AxyI	CCTNAGG	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	648
BauI	CACGAG	1 cut(s)	933
BccI	CCATC	3 cut(s)	416, 615, 883
BciVI	GTATCC	1 cut(s)	576
BclI	TGATCA	4 cut(s)	175, 385, 576, 670
BcoDI	GTCTC	2 cut(s)	686, 868
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	3 cut(s)	71, 333, 360
BfmI	CTRYAG	1 cut(s)	463
BfoI	RGCGCY	1 cut(s)	169
BfuI	GTATCC	1 cut(s)	576
BglI	GCCNNNNNGGC	1 cut(s)	432
Bme18I	GGWCC	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	807
BmgT120I	GGNCC	2 cut(s)	293, 425
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	3 cut(s)	103, 250, 253
BmuI	ACTGGG	1 cut(s)	92
BpuEI	CTTGAG	2 cut(s)	179, 596
BsaBI	GATNNNNATC	2 cut(s)	663, 669
BsaJI	CCNNGG	4 cut(s)	33, 248, 342, 856
Bsc4I	CCNNNNNNNGG	2 cut(s)	549, 613
Bse1I	ACTGG	1 cut(s)	87
Bse21I	CCTNAGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	707
Bse8I	GATNNNNATC	2 cut(s)	663, 669
BseDI	CCNNGG	4 cut(s)	33, 248, 342, 856
BseGI	GGATG	4 cut(s)	94, 178, 244, 496
BseJI	GATNNNNATC	2 cut(s)	663, 669
BseLI	CCNNNNNNNGG	2 cut(s)	549, 613
BseMI	GCAATG	1 cut(s)	707
BseMII	CTCAG	4 cut(s)	6, 57, 90, 498
BseNI	ACTGG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	359
BseYI	CCCAGC	1 cut(s)	168
BshFI	GGCC	4 cut(s)	281, 426, 512, 648
BsiHKCI	CYCGRG	1 cut(s)	807
BslI	CCNNNNNNNGG	2 cut(s)	549, 613
BsmAI	GTCTC	2 cut(s)	686, 868
BsmBI	CGTCTC	1 cut(s)	686
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	4 cut(s)	281, 426, 512, 648
BsoBI	CYCGRG	1 cut(s)	807
Bsp143I	GATC	8 cut(s)	175, 335, 385, 476, 576, 664, 670, 831
Bsp19I	CCATGG	1 cut(s)	248
BspANI	GGCC	4 cut(s)	281, 426, 512, 648
BspCNI	CTCAG	4 cut(s)	7, 56, 91, 499
BspPI	GGATC	2 cut(s)	484, 672
BsrDI	GCAATG	1 cut(s)	707
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	4 cut(s)	33, 248, 342, 856
BssMI	GATC	8 cut(s)	175, 335, 385, 476, 576, 664, 670, 831
BssSI	CACGAG	1 cut(s)	933
BssT1I	CCWWGG	2 cut(s)	33, 248
Bst2BI	CACGAG	1 cut(s)	933
Bst4CI	ACNGT	1 cut(s)	697
Bst6I	CTCTTC	1 cut(s)	879
BstC8I	GCNNGC	5 cut(s)	328, 437, 540, 602, 930
BstDEI	CTNAG	4 cut(s)	15, 43, 99, 507
BstDSI	CCRYGG	2 cut(s)	248, 856
BstF5I	GGATG	4 cut(s)	94, 178, 244, 496
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	8 cut(s)	178, 338, 388, 479, 579, 667, 673, 834
BstMAI	GTCTC	2 cut(s)	686, 868
BstMBI	GATC	8 cut(s)	175, 335, 385, 476, 576, 664, 670, 831
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 196, 269, 278, 365, 432
BstNSI	RCATGY	2 cut(s)	330, 542
BstSFI	CTRYAG	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	664
BstXI	CCANNNNNNTGG	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	664
Bsu36I	CCTNAGG	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	576
BsuRI	GGCC	4 cut(s)	281, 426, 512, 648
BtgI	CCRYGG	2 cut(s)	248, 856
BtsCI	GGATG	4 cut(s)	94, 178, 244, 496
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	2 cut(s)	80, 495
Cac8I	GCNNGC	5 cut(s)	328, 437, 540, 602, 930
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	293, 425
Csp6I	GTAC	1 cut(s)	711
CviAII	CATG	7 cut(s)	182, 200, 249, 327, 539, 674, 823
CviQI	GTAC	1 cut(s)	711
DdeI	CTNAG	4 cut(s)	15, 43, 99, 507
DpnI	GATC	8 cut(s)	177, 337, 387, 478, 578, 666, 672, 833
DpnII	GATC	8 cut(s)	175, 335, 385, 476, 576, 664, 670, 831
EaeI	YGGCCR	1 cut(s)	646
Eam1104I	CTCTTC	1 cut(s)	879
EarI	CTCTTC	1 cut(s)	879
Eco130I	CCWWGG	2 cut(s)	33, 248
Eco147I	AGGCCT	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	293
Eco47III	AGCGCT	1 cut(s)	167
Eco57I	CTGAAG	2 cut(s)	100, 450
Eco81I	CCTNAGG	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	807
EcoRI	GAATTC	1 cut(s)	842
EcoT14I	CCWWGG	2 cut(s)	33, 248
EcoT22I	ATGCAT	1 cut(s)	246
ErhI	CCWWGG	2 cut(s)	33, 248
Esp3I	CGTCTC	1 cut(s)	686
FaeI	CATG	7 cut(s)	185, 203, 252, 330, 542, 677, 826
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	7 cut(s)	181, 199, 248, 326, 538, 673, 822
FauNDI	CATATG	1 cut(s)	304
FbaI	TGATCA	4 cut(s)	175, 385, 576, 670
FokI	GGATG	4 cut(s)	81, 185, 231, 503
FspBI	CTAG	3 cut(s)	71, 333, 360
GlaI	GCGC	1 cut(s)	167
GsaI	CCCAGC	1 cut(s)	172
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	4 cut(s)	281, 426, 512, 648
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	7 cut(s)	185, 203, 252, 330, 542, 677, 826
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	4 cut(s)	299, 553, 815, 861
HphI	GGTGA	4 cut(s)	22, 170, 586, 913
Hpy188I	TCNGA	3 cut(s)	343, 508, 820
HpyAV	CCTTC	5 cut(s)	58, 124, 358, 425, 467
HpyCH4III	ACNGT	1 cut(s)	697
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	8 cut(s)	22, 244, 326, 330, 500, 700, 766, 932
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 196, 269, 278, 365, 432
HpyF3I	CTNAG	4 cut(s)	15, 43, 99, 507
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	7 cut(s)	185, 203, 252, 330, 542, 677, 826
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	4 cut(s)	175, 385, 576, 670
Kzo9I	GATC	8 cut(s)	175, 335, 385, 476, 576, 664, 670, 831
LmnI	GCTCC	3 cut(s)	346, 356, 597
LweI	GCATC	3 cut(s)	103, 250, 253
MaeI	CTAG	3 cut(s)	71, 333, 360
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	802
MalI	GATC	8 cut(s)	177, 337, 387, 478, 578, 666, 672, 833
MboI	GATC	8 cut(s)	175, 335, 385, 476, 576, 664, 670, 831
MboII	GAAGA	3 cut(s)	413, 575, 896
MflI	RGATCY	1 cut(s)	664
MlsI	TGGCCA	1 cut(s)	648
MluCI	AATT	3 cut(s)	798, 842, 879
MluNI	TGGCCA	1 cut(s)	648
MlyI	GAGTC	2 cut(s)	809, 870
Mox20I	TGGCCA	1 cut(s)	648
Mph1103I	ATGCAT	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	648
MseI	TTAA	4 cut(s)	216, 486, 525, 686
MslI	CAYNNNNRTG	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	648
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	6 cut(s)	74, 196, 269, 278, 365, 432
NcoI	CCATGG	1 cut(s)	248
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	8 cut(s)	175, 335, 385, 476, 576, 664, 670, 831
NlaIII	CATG	7 cut(s)	185, 203, 252, 330, 542, 677, 826
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	2 cut(s)	330, 542
PaeI	GCATGC	2 cut(s)	330, 542
PceI	AGGCCT	1 cut(s)	281
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	299, 553
PleI	GAGTC	2 cut(s)	809, 869
PpsI	GAGTC	2 cut(s)	809, 869
Psp1406I	AACGTT	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	168
PspPI	GGNCC	2 cut(s)	293, 425
PsuI	RGATCY	1 cut(s)	664
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
RseI	CAYNNNNRTG	1 cut(s)	420
SaqAI	TTAA	4 cut(s)	216, 486, 525, 686
Sau3AI	GATC	8 cut(s)	175, 335, 385, 476, 576, 664, 670, 831
Sau96I	GGNCC	2 cut(s)	293, 425
SchI	GAGTC	2 cut(s)	809, 870
SfaNI	GCATC	3 cut(s)	103, 250, 253
SfcI	CTRYAG	1 cut(s)	463
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	2 cut(s)	194, 611
SmoI	CTYRAG	2 cut(s)	194, 611
SpeI	ACTAGT	1 cut(s)	70
SphI	GCATGC	2 cut(s)	330, 542
Sse9I	AATT	3 cut(s)	798, 842, 879
SseBI	AGGCCT	1 cut(s)	281
SspI	AATATT	1 cut(s)	725
SspMI	CTAG	3 cut(s)	71, 333, 360
StuI	AGGCCT	1 cut(s)	281
StyI	CCWWGG	2 cut(s)	33, 248
TaaI	ACNGT	1 cut(s)	697
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	873
TasI	AATT	3 cut(s)	798, 842, 879
TatI	WGTACW	1 cut(s)	710
TfiI	GAWTC	2 cut(s)	299, 553
Tru1I	TTAA	4 cut(s)	216, 486, 525, 686
Tru9I	TTAA	4 cut(s)	216, 486, 525, 686
TscAI	CASTG	2 cut(s)	87, 502
TspDTI	ATGAA	4 cut(s)	165, 486, 576, 738
TspGWI	ACGGA	1 cut(s)	873
TspRI	CASTG	2 cut(s)	87, 502
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	1 cut(s)	842
XceI	RCATGY	2 cut(s)	330, 542
XspI	CTAG	3 cut(s)	71, 333, 360
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.