Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006582

Physical Location & Seq

Genomic Coordinates Forward (+)

2008111 .. 2011630

Gene Structure 3520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g02480.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCGGCACGGCAAGAAGATCTCTATCAACAGAATCAACACAGACAAGACAATGGCTCTCACTCCTGAGCTGCAAACTCTCACCAAGGCTTTCTCAGGACTTGGAGTTGATGAGAAGGCACTGGTGGCAATATTGGGAAAATCGCATCCTGAGGAAAGGCAATCCTTCAGGAAAGCAACAACTCCTCACTTTTTCAAGGAAGACGAACGTTCCTTCGAGCGCTGGGATGATCACCATATCAAGCTTCTCAAGCATGAGTTCTTGCGTTTTAAGAATGCTGTGGTCCTATGGACAATGCATCCATGGGAAAGAGATGCTCGTTTGGCAAAGGAGGCCTTGAAGAAAGGTCCAGAATCATATGGTATTCTTGTTGAGATTGCATGCACGAGATCGTCCGAGGAGCTATTAGGAGCTAGGAAGGCCTACCATTCCCTCTTTGATCACTCCATTGAGGAAGATGTTGCCTGCCACATTGATGGCCCTGAAGGCAAGCTCTTGGTTGCTCTTGTGAGTTCCTATAGGTATGAAGGATCAAAGGTTAAGGATGACACTGCAAAATCTGAGGCCAAAACACTTGTTAATGCCATTAAGGATGTCGATAAGAGGCACCCCAATGAAGATGATGAGGTGATCAGGATACTATCAACAAGGAGCAAGCCCCATCTCAAGGAAGTCTCTAAACAGTACAAGGAAATTTCTGGCCACGACATTGATGAAGATCTTGATCATGCTGTGAGGTTAAAAGAGACGGTGCAGTGCCTGTGTACTCCTGAGAAATATTTCAGCAAGGTCTTGGAAGATTCATTGAGAACTGATGTCCATAAGCATGCCAAGAAGGGATTGACTAGAGTAATTGTTACCCGAGCTCACTTGGACATGGTGGAGATCAAGGAGGAATTCGAGAACCATCATGGAGTCTCTTTAGTTGAGAAAATTGAAGAGACGGCTAATGGGAATTATAAGGATTTCCTACTCACATTGCTTGCAAAAGGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0030054 GO:0033993 GO:0042221 GO:0050896 GO:0055044 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

333

Amino Acids

37.98

Weight (kDa)

6.84

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38750 AT2G38750
fragaria_vesca	FvH4_7g02660 FvH4_7g02660 FvH4_7g02660
malus_domestica	MD02G1291200.v1.1 MD07G1035400.v1.1
prunus_persica	Prupe.2G031800_v2.0.a1
pyrus_communis	pycom02g24610 pycom07g02480
rosa_chinensis	RchiOBHm_Chr1g0321341
rosa_laevigata	RLG00000030427
rosa_multiflora	Rmu_sc0000960.1_g000008 Rmu_sc0000960.1_g000009
rosa_roxburghii	Rroxscaffold_160G00433980 Rroxscaffold_4G00327600 Rroxscaffold_4G00327810
rosa_rugosa	Rorug01G0032300 Rorug01G0033000
rosa_samantha	Rh1AG044700 Rh1BG042100 Rh1BG042900 Rh1CG047100 Rh1CG047500 Rh1DG051600
rosa_wichuraiana	Rw1G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	960
AccB1I	GGYRCC	1 cut(s)	606
AciI	CCGC	1 cut(s)	4
AclI	AACGTT	1 cut(s)	208
AclWI	GGATC	1 cut(s)	538
AcoI	YGGCCR	1 cut(s)	700
AcsI	RAATTY	2 cut(s)	693, 896
AcuI	CTGAAG	2 cut(s)	151, 504
AfaI	GTAC	2 cut(s)	686, 766
AfeI	AGCGCT	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	667
AgsI	TTSAA	3 cut(s)	196, 340, 938
AluBI	AGCT	6 cut(s)	70, 244, 403, 413, 493, 866
AluI	AGCT	6 cut(s)	70, 244, 403, 413, 493, 866
Alw21I	GWGCWC	1 cut(s)	868
Alw26I	GTCTC	4 cut(s)	679, 740, 922, 935
AlwI	GGATC	1 cut(s)	538
AlwNI	CAGNNNCTG	1 cut(s)	760
Ama87I	CYCGRG	1 cut(s)	861
Aor51HI	AGCGCT	1 cut(s)	221
AoxI	GGCC	5 cut(s)	333, 420, 478, 564, 700
ApeKI	GCWGC	1 cut(s)	70
ApoI	RAATTY	2 cut(s)	693, 896
Asp700I	GAANNNNTTC	1 cut(s)	779
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	3 cut(s)	283, 347, 479
AsuHPI	GGTGA	3 cut(s)	73, 224, 640
AvaI	CYCGRG	1 cut(s)	861
AvaII	GGWCC	2 cut(s)	283, 347
AxyI	CCTNAGG	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	702
BanI	GGYRCC	1 cut(s)	606
BanII	GRGCYC	1 cut(s)	868
BauI	CACGAG	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	868
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	3 cut(s)	470, 669, 915
BceAI	ACGGC	2 cut(s)	25, 960
BciVI	GTATCC	1 cut(s)	630
BclI	TGATCA	4 cut(s)	229, 439, 630, 724
BcoDI	GTCTC	4 cut(s)	679, 740, 922, 935
BfaI	CTAG	2 cut(s)	414, 846
BfmI	CTRYAG	1 cut(s)	517
BfoI	RGCGCY	1 cut(s)	223
BfuI	GTATCC	1 cut(s)	630
BglI	GCCNNNNNGGC	1 cut(s)	486
BglII	AGATCT	2 cut(s)	18, 718
BisI	GCNGC	2 cut(s)	5, 71
BlsI	GCNGC	2 cut(s)	6, 72
Bme18I	GGWCC	2 cut(s)	283, 347
BmeT110I	CYCGRG	1 cut(s)	861
BmgT120I	GGNCC	3 cut(s)	283, 347, 479
BmiI	GGNNCC	1 cut(s)	608
BmsI	GCATC	3 cut(s)	154, 304, 307
BpiI	GAAGAC	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	2 cut(s)	233, 650
BsaBI	GATNNNNATC	3 cut(s)	23, 717, 723
BsaJI	CCNNGG	3 cut(s)	84, 302, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	667
Bse1I	ACTGG	1 cut(s)	126
Bse21I	CCTNAGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	977
Bse8I	GATNNNNATC	3 cut(s)	23, 717, 723
BseDI	CCNNGG	3 cut(s)	84, 302, 396
BseGI	GGATG	5 cut(s)	145, 232, 298, 550, 598
BseJI	GATNNNNATC	3 cut(s)	23, 717, 723
BseLI	CCNNNNNNNGG	1 cut(s)	667
BseMI	GCAATG	1 cut(s)	977
BseMII	CTCAG	5 cut(s)	57, 108, 141, 552, 762
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	2 cut(s)	174, 413
BseXI	GCAGC	1 cut(s)	57
BseYI	CCCAGC	1 cut(s)	222
BsgI	GTGCAG	1 cut(s)	773
BshFI	GGCC	5 cut(s)	335, 422, 480, 566, 702
BshNI	GGYRCC	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	868
BsiHKCI	CYCGRG	1 cut(s)	861
BslI	CCNNNNNNNGG	1 cut(s)	667
BsmAI	GTCTC	4 cut(s)	679, 740, 922, 935
BsmBI	CGTCTC	2 cut(s)	740, 935
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	5 cut(s)	335, 422, 480, 566, 702
BsoBI	CYCGRG	1 cut(s)	861
Bsp1286I	GDGCHC	1 cut(s)	868
Bsp143I	GATC	9 cut(s)	18, 229, 389, 439, 530, 630, 718, 724, 885
Bsp19I	CCATGG	1 cut(s)	302
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	5 cut(s)	335, 422, 480, 566, 702
BspCNI	CTCAG	5 cut(s)	58, 107, 142, 553, 763
BspLI	GGNNCC	1 cut(s)	608
BspPI	GGATC	1 cut(s)	538
BspT107I	GGYRCC	1 cut(s)	606
BsrDI	GCAATG	1 cut(s)	977
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	3 cut(s)	84, 302, 396
BssMI	GATC	9 cut(s)	18, 229, 389, 439, 530, 630, 718, 724, 885
BssSI	CACGAG	1 cut(s)	385
BssT1I	CCWWGG	2 cut(s)	84, 302
Bst2BI	CACGAG	1 cut(s)	385
Bst4CI	ACNGT	2 cut(s)	684, 751
Bst6I	CTCTTC	1 cut(s)	933
BstC8I	GCNNGC	6 cut(s)	382, 466, 491, 656, 828, 984
BstDEI	CTNAG	5 cut(s)	66, 94, 150, 561, 771
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	5 cut(s)	145, 232, 298, 550, 598
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	9 cut(s)	21, 232, 392, 442, 533, 633, 721, 727, 888
BstMAI	GTCTC	4 cut(s)	679, 740, 922, 935
BstMBI	GATC	9 cut(s)	18, 229, 389, 439, 530, 630, 718, 724, 885
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 250, 323, 332, 419, 486
BstNSI	RCATGY	2 cut(s)	384, 830
BstSFI	CTRYAG	1 cut(s)	517
BstV1I	GCAGC	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	2 cut(s)	18, 718
BstXI	CCANNNNNNTGG	1 cut(s)	476
BstYI	RGATCY	2 cut(s)	18, 718
Bsu36I	CCTNAGG	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	5 cut(s)	335, 422, 480, 566, 702
BtgI	CCRYGG	1 cut(s)	302
BtsCI	GGATG	5 cut(s)	145, 232, 298, 550, 598
BtsI	GCAGTG	2 cut(s)	549, 761
BtsIMutI	CAGTG	3 cut(s)	119, 549, 761
Cac8I	GCNNGC	6 cut(s)	382, 466, 491, 656, 828, 984
CaiI	CAGNNNCTG	1 cut(s)	760
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	3 cut(s)	283, 347, 479
Csp6I	GTAC	2 cut(s)	685, 765
CviAII	CATG	7 cut(s)	254, 303, 381, 728, 827, 877, 911
CviQI	GTAC	2 cut(s)	685, 765
DdeI	CTNAG	5 cut(s)	66, 94, 150, 561, 771
DpnI	GATC	9 cut(s)	20, 231, 391, 441, 532, 632, 720, 726, 887
DpnII	GATC	9 cut(s)	18, 229, 389, 439, 530, 630, 718, 724, 885
EaeI	YGGCCR	1 cut(s)	700
Eam1104I	CTCTTC	1 cut(s)	933
EarI	CTCTTC	1 cut(s)	933
Ecl136II	GAGCTC	1 cut(s)	866
Eco130I	CCWWGG	2 cut(s)	84, 302
Eco147I	AGGCCT	2 cut(s)	335, 422
Eco24I	GRGCYC	1 cut(s)	868
Eco47I	GGWCC	2 cut(s)	283, 347
Eco47III	AGCGCT	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	866
Eco57I	CTGAAG	2 cut(s)	151, 504
Eco81I	CCTNAGG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	861
EcoICRI	GAGCTC	1 cut(s)	866
EcoRI	GAATTC	1 cut(s)	896
EcoT14I	CCWWGG	2 cut(s)	84, 302
EcoT22I	ATGCAT	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	868
ErhI	CCWWGG	2 cut(s)	84, 302
Esp3I	CGTCTC	2 cut(s)	740, 935
FaeI	CATG	7 cut(s)	257, 306, 384, 731, 830, 880, 914
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FatI	CATG	7 cut(s)	253, 302, 380, 727, 826, 876, 910
FauNDI	CATATG	1 cut(s)	358
FbaI	TGATCA	4 cut(s)	229, 439, 630, 724
Fnu4HI	GCNGC	2 cut(s)	5, 71
FokI	GGATG	5 cut(s)	132, 239, 285, 557, 605
FriOI	GRGCYC	1 cut(s)	868
Fsp4HI	GCNGC	2 cut(s)	5, 71
FspBI	CTAG	2 cut(s)	414, 846
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	2 cut(s)	5, 71
GsaI	CCCAGC	1 cut(s)	226
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	5 cut(s)	335, 422, 480, 566, 702
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	7 cut(s)	257, 306, 384, 731, 830, 880, 914
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	4 cut(s)	33, 353, 800, 915
HphI	GGTGA	3 cut(s)	73, 224, 640
Hpy166II	GTNNAC	1 cut(s)	765
Hpy188I	TCNGA	2 cut(s)	397, 562
Hpy188III	TCNNGA	9 cut(s)	65, 96, 149, 169, 350, 634, 722, 770, 901
Hpy8I	GTNNAC	1 cut(s)	765
HpyAV	CCTTC	7 cut(s)	109, 175, 223, 412, 479, 521, 829
HpyCH4III	ACNGT	2 cut(s)	684, 751
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	7 cut(s)	73, 298, 380, 384, 554, 754, 986
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 250, 323, 332, 419, 486
HpyF3I	CTNAG	5 cut(s)	66, 94, 150, 561, 771
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	7 cut(s)	257, 306, 384, 731, 830, 880, 914
HspAI	GCGC	1 cut(s)	220
Ksp22I	TGATCA	4 cut(s)	229, 439, 630, 724
Kzo9I	GATC	9 cut(s)	18, 229, 389, 439, 530, 630, 718, 724, 885
LmnI	GCTCC	3 cut(s)	400, 410, 651
Lsp1109I	GCAGC	1 cut(s)	57
LweI	GCATC	3 cut(s)	154, 304, 307
MaeI	CTAG	2 cut(s)	414, 846
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	1 cut(s)	856
MalI	GATC	9 cut(s)	20, 231, 391, 441, 532, 632, 720, 726, 887
MboI	GATC	9 cut(s)	18, 229, 389, 439, 530, 630, 718, 724, 885
MboII	GAAGA	8 cut(s)	28, 212, 352, 467, 629, 728, 809, 950
MflI	RGATCY	2 cut(s)	18, 718
MhlI	GDGCHC	1 cut(s)	868
MlsI	TGGCCA	1 cut(s)	702
MluCI	AATT	5 cut(s)	693, 852, 896, 933, 955
MluNI	TGGCCA	1 cut(s)	702
MlyI	GAGTC	1 cut(s)	924
Mox20I	TGGCCA	1 cut(s)	702
Mph1103I	ATGCAT	1 cut(s)	300
MroXI	GAANNNNTTC	1 cut(s)	779
MscI	TGGCCA	1 cut(s)	702
MseI	TTAA	5 cut(s)	270, 540, 579, 588, 740
MslI	CAYNNNNRTG	3 cut(s)	474, 612, 825
Msp20I	TGGCCA	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	280
MwoI	GCNNNNNNNGC	6 cut(s)	125, 250, 323, 332, 419, 486
NcoI	CCATGG	1 cut(s)	302
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	9 cut(s)	18, 229, 389, 439, 530, 630, 718, 724, 885
NlaIII	CATG	7 cut(s)	257, 306, 384, 731, 830, 880, 914
NlaIV	GGNNCC	1 cut(s)	608
NsiI	ATGCAT	1 cut(s)	300
NspI	RCATGY	2 cut(s)	384, 830
PaeI	GCATGC	2 cut(s)	384, 830
PceI	AGGCCT	2 cut(s)	335, 422
PctI	GAATGC	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	779
PfeI	GAWTC	3 cut(s)	33, 353, 800
PkrI	GCNGC	2 cut(s)	6, 72
PleI	GAGTC	1 cut(s)	923
PpsI	GAGTC	1 cut(s)	923
PsiI	TTATAA	1 cut(s)	960
Psp124BI	GAGCTC	1 cut(s)	868
Psp1406I	AACGTT	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	608
PspPI	GGNCC	3 cut(s)	283, 347, 479
PstNI	CAGNNNCTG	1 cut(s)	760
PsuI	RGATCY	2 cut(s)	18, 718
RsaI	GTAC	2 cut(s)	686, 766
RsaNI	GTAC	2 cut(s)	685, 765
RseI	CAYNNNNRTG	3 cut(s)	474, 612, 825
SacI	GAGCTC	1 cut(s)	868
SaqAI	TTAA	5 cut(s)	270, 540, 579, 588, 740
SatI	GCNGC	2 cut(s)	5, 71
Sau3AI	GATC	9 cut(s)	18, 229, 389, 439, 530, 630, 718, 724, 885
Sau96I	GGNCC	3 cut(s)	283, 347, 479
SchI	GAGTC	1 cut(s)	924
SduI	GDGCHC	1 cut(s)	868
SfaNI	GCATC	3 cut(s)	154, 304, 307
SfcI	CTRYAG	1 cut(s)	517
SinI	GGWCC	2 cut(s)	283, 347
SmiMI	CAYNNNNRTG	3 cut(s)	474, 612, 825
SmlI	CTYRAG	2 cut(s)	248, 665
SmoI	CTYRAG	2 cut(s)	248, 665
SphI	GCATGC	2 cut(s)	384, 830
Sse9I	AATT	5 cut(s)	693, 852, 896, 933, 955
SseBI	AGGCCT	2 cut(s)	335, 422
SsiI	CCGC	1 cut(s)	4
SspI	AATATT	2 cut(s)	132, 779
SspMI	CTAG	2 cut(s)	414, 846
SstI	GAGCTC	1 cut(s)	868
StuI	AGGCCT	2 cut(s)	335, 422
StyI	CCWWGG	2 cut(s)	84, 302
TaaI	ACNGT	2 cut(s)	684, 751
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	3 cut(s)	216, 597, 900
TasI	AATT	5 cut(s)	693, 852, 896, 933, 955
TatI	WGTACW	2 cut(s)	684, 764
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	33, 353, 800
Tru1I	TTAA	5 cut(s)	270, 540, 579, 588, 740
Tru9I	TTAA	5 cut(s)	270, 540, 579, 588, 740
TscAI	CASTG	3 cut(s)	126, 556, 761
TseI	GCWGC	1 cut(s)	70
TspDTI	ATGAA	4 cut(s)	540, 630, 729, 792
TspRI	CASTG	3 cut(s)	126, 556, 761
VpaK11BI	GGWCC	2 cut(s)	283, 347
XapI	RAATTY	2 cut(s)	693, 896
XceI	RCATGY	2 cut(s)	384, 830
XmnI	GAANNNNTTC	1 cut(s)	779
XspI	CTAG	2 cut(s)	414, 846
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.