Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006582

Physical Location & Seq

Genomic Coordinates Forward (+)

8826986 .. 8830131

Gene Structure 3146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG047100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCGCTTTAAGAATGCTGTGGTGTTATGGGCTATGCATCCATGGGAAAGAGATGCTCGCTTGGTGAAGGAGGCTTTGAAGAAAGGGCCAGAAGTCTATGGTGTTATTGTAGAGATTGCATGCACTAGATCCTCAGAAGAGCTATTAGGAGCTAGAAAGGCCTACCATTCCCTCTTTGACCACTCCATTGAAGAAGATGTTGCCTACCACATTGATGGCCCTGAAAGCAAGCTCTTGGTTGCACTTGTTAGTGCCTATAGGTATGAAGGAGCAAAGGTTAAAGATGACATCGCAAAATCTGAGGCACAAACACTCTCTCATGCCATTAAGAATGCAGATAAGACAAACCCCATCGAAGATGATGAGGTGATTAGGTTACTATCAACAAGGAGCAAGGCCCATCTCCAGGAAGTATATGAACAGTACAAGGAGATTTCTGGCCAGAACATCGATGAGGATCTTGATGCTGCTTTGAGGTTAAAAGAGACGGTGCAATGCCTATGTACTCCTCAGACATATTTCAGCAAGGTGCTGGAATTGGCATTGAGGAATGATGTGGATAAGAACACCAAAAAGGGACTGACTAGAGTAATTGTGACCCGAGCTGACACAGATATGAAAGAGATCAAAGAGGATTACGAGAACCAATATGGAGTTTCTCTATCCAATAAAATTGAAGAGACAGCTAATGGGAACTATAAGGATTTCTTGCTTACCTTGGTTGCAAGGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0030054 GO:0033993 GO:0042221 GO:0050896 GO:0055044 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

244

Amino Acids

27.74

Weight (kDa)

5.51

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	17 - 82	1.3e-08	Annexin
Annexin	PF00191	102 - 157	3.1e-08	Annexin
Annexin	PF00191	192 - 240	3.1e-09	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38750 AT2G38750
fragaria_vesca	FvH4_7g02660 FvH4_7g02660 FvH4_7g02660
malus_domestica	MD02G1291200.v1.1 MD07G1035400.v1.1
prunus_persica	Prupe.2G031800_v2.0.a1
pyrus_communis	pycom02g24610 pycom07g02480
rosa_chinensis	RchiOBHm_Chr1g0321341
rosa_laevigata	RLG00000030427
rosa_multiflora	Rmu_sc0000960.1_g000008 Rmu_sc0000960.1_g000009
rosa_roxburghii	Rroxscaffold_160G00433980 Rroxscaffold_4G00327600 Rroxscaffold_4G00327810
rosa_rugosa	Rorug01G0032300 Rorug01G0033000
rosa_samantha	Rh1AG044700 Rh1BG042100 Rh1BG042900 Rh1CG047100 Rh1CG047500 Rh1DG051600
rosa_wichuraiana	Rw1G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	123, 465
AcoI	YGGCCR	1 cut(s)	439
AfaI	GTAC	2 cut(s)	425, 505
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	3 cut(s)	79, 191, 677
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	5 cut(s)	142, 152, 232, 605, 686
AluI	AGCT	5 cut(s)	142, 152, 232, 605, 686
Alw26I	GTCTC	2 cut(s)	479, 674
AlwI	GGATC	2 cut(s)	123, 465
Ama87I	CYCGRG	1 cut(s)	600
AoxI	GGCC	5 cut(s)	86, 159, 217, 396, 439
ApeKI	GCWGC	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	4 cut(s)	86, 218, 397, 729
AsuHPI	GGTGA	2 cut(s)	76, 379
AvaI	CYCGRG	1 cut(s)	600
AvaII	GGWCC	1 cut(s)	729
BalI	TGGCCA	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	3 cut(s)	209, 359, 408
BciT130I	CCWGG	1 cut(s)	407
BcoDI	GTCTC	2 cut(s)	479, 674
BfaI	CTAG	4 cut(s)	126, 153, 585, 733
BfmI	CTRYAG	1 cut(s)	256
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	1 cut(s)	729
BmeT110I	CYCGRG	1 cut(s)	600
BmgT120I	GGNCC	4 cut(s)	86, 218, 397, 729
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	3 cut(s)	43, 46, 454
BpmI	CTGGAG	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	41, 717
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	500
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	407
BseCI	ATCGAT	1 cut(s)	450
BseDI	CCNNGG	2 cut(s)	41, 717
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMI	GCAATG	1 cut(s)	500
BseMII	CTCAG	3 cut(s)	147, 291, 524
BseRI	GAGGAG	1 cut(s)	498
BseXI	GCAGC	1 cut(s)	454
BshFI	GGCC	5 cut(s)	88, 161, 219, 398, 441
BshVI	ATCGAT	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	600
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	2 cut(s)	479, 674
BsmBI	CGTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	591
BsmI	GAATGC	2 cut(s)	19, 337
BsnI	GGCC	5 cut(s)	88, 161, 219, 398, 441
BsoBI	CYCGRG	1 cut(s)	600
Bsp143I	GATC	3 cut(s)	128, 457, 624
Bsp19I	CCATGG	1 cut(s)	41
BspANI	GGCC	5 cut(s)	88, 161, 219, 398, 441
BspCNI	CTCAG	3 cut(s)	146, 292, 523
BspDI	ATCGAT	1 cut(s)	450
BspPI	GGATC	2 cut(s)	123, 465
BspQI	GCTCTTC	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	500
BssECI	CCNNGG	2 cut(s)	41, 717
BssMI	GATC	3 cut(s)	128, 457, 624
BssT1I	CCWWGG	2 cut(s)	41, 717
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	2 cut(s)	423, 490
Bst6I	CTCTTC	2 cut(s)	132, 672
BstC8I	GCNNGC	3 cut(s)	58, 121, 230
BstDEI	CTNAG	3 cut(s)	133, 300, 510
BstDSI	CCRYGG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	131, 460, 627
BstMAI	GTCTC	2 cut(s)	479, 674
BstMBI	GATC	3 cut(s)	128, 457, 624
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 225
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	454
BstX2I	RGATCY	2 cut(s)	128, 457
BstXI	CCANNNNNNTGG	1 cut(s)	215
BstYI	RGATCY	2 cut(s)	128, 457
Bsu15I	ATCGAT	1 cut(s)	450
BsuRI	GGCC	5 cut(s)	88, 161, 219, 398, 441
BsuTUI	ATCGAT	1 cut(s)	450
BtgI	CCRYGG	1 cut(s)	41
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	37
Cac8I	GCNNGC	3 cut(s)	58, 121, 230
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	4 cut(s)	86, 218, 397, 729
ClaI	ATCGAT	1 cut(s)	450
Csp6I	GTAC	2 cut(s)	424, 504
CviAII	CATG	3 cut(s)	42, 120, 320
CviQI	GTAC	2 cut(s)	424, 504
DdeI	CTNAG	3 cut(s)	133, 300, 510
DpnI	GATC	3 cut(s)	130, 459, 626
DpnII	GATC	3 cut(s)	128, 457, 624
EaeI	YGGCCR	1 cut(s)	439
Eam1104I	CTCTTC	2 cut(s)	132, 672
EarI	CTCTTC	2 cut(s)	132, 672
Eco130I	CCWWGG	2 cut(s)	41, 717
Eco147I	AGGCCT	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	729
Eco88I	CYCGRG	1 cut(s)	600
EcoO109I	RGGNCCY	1 cut(s)	729
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	2 cut(s)	41, 717
EcoT22I	ATGCAT	1 cut(s)	39
ErhI	CCWWGG	2 cut(s)	41, 717
Esp3I	CGTCTC	1 cut(s)	479
FaeI	CATG	3 cut(s)	45, 123, 323
FalI	AAGNNNNNCTT	2 cut(s)	692, 724
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	3 cut(s)	41, 119, 319
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	4 cut(s)	126, 153, 585, 733
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	468
GsuI	CTGGAG	1 cut(s)	389
HaeIII	GGCC	5 cut(s)	88, 161, 219, 398, 441
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	45, 123, 323
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HphI	GGTGA	2 cut(s)	76, 379
Hpy188I	TCNGA	3 cut(s)	136, 301, 513
Hpy188III	TCNNGA	1 cut(s)	461
HpyAV	CCTTC	2 cut(s)	61, 260
HpyCH4III	ACNGT	2 cut(s)	423, 490
HpyCH4V	TGCA	7 cut(s)	37, 119, 123, 242, 335, 493, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 225
HpyF3I	CTNAG	3 cut(s)	133, 300, 510
Hsp92II	CATG	3 cut(s)	45, 123, 323
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	3 cut(s)	128, 457, 624
LguI	GCTCTTC	1 cut(s)	132
LmnI	GCTCC	3 cut(s)	149, 269, 390
LpnPI	CCDG	7 cut(s)	102, 234, 392, 419, 423, 455, 518
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	3 cut(s)	43, 46, 454
MaeI	CTAG	4 cut(s)	126, 153, 585, 733
MaeIII	GTNAC	2 cut(s)	375, 595
MalI	GATC	3 cut(s)	130, 459, 626
MboI	GATC	3 cut(s)	128, 457, 624
MboII	GAAGA	6 cut(s)	91, 149, 203, 206, 368, 689
MflI	RGATCY	2 cut(s)	128, 457
MlsI	TGGCCA	1 cut(s)	441
MluCI	AATT	3 cut(s)	536, 591, 672
MluNI	TGGCCA	1 cut(s)	441
Mox20I	TGGCCA	1 cut(s)	441
Mph1103I	ATGCAT	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	441
MseI	TTAA	4 cut(s)	9, 279, 327, 479
MslI	CAYNNNNRTG	2 cut(s)	213, 614
Msp20I	TGGCCA	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	407
Mva1269I	GAATGC	2 cut(s)	19, 337
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	158, 225
NcoI	CCATGG	1 cut(s)	41
NdeII	GATC	3 cut(s)	128, 457, 624
NlaIII	CATG	3 cut(s)	45, 123, 323
NmuCI	GTSAC	1 cut(s)	595
NsiI	ATGCAT	1 cut(s)	39
NspI	RCATGY	1 cut(s)	123
PaeI	GCATGC	1 cut(s)	123
PceI	AGGCCT	1 cut(s)	161
PciSI	GCTCTTC	1 cut(s)	132
PctI	GAATGC	2 cut(s)	19, 337
PfoI	TCCNGGA	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	469
PpuMI	RGGWCCY	1 cut(s)	729
Psp5II	RGGWCCY	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspPI	GGNCC	4 cut(s)	86, 218, 397, 729
PspPPI	RGGWCCY	1 cut(s)	729
PsuI	RGATCY	2 cut(s)	128, 457
RsaI	GTAC	2 cut(s)	425, 505
RsaNI	GTAC	2 cut(s)	424, 504
RseI	CAYNNNNRTG	2 cut(s)	213, 614
SapI	GCTCTTC	1 cut(s)	132
SaqAI	TTAA	4 cut(s)	9, 279, 327, 479
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	3 cut(s)	128, 457, 624
Sau96I	GGNCC	4 cut(s)	86, 218, 397, 729
ScrFI	CCNGG	1 cut(s)	407
SfaNI	GCATC	3 cut(s)	43, 46, 454
SfcI	CTRYAG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	729
SmiMI	CAYNNNNRTG	2 cut(s)	213, 614
SphI	GCATGC	1 cut(s)	123
Sse9I	AATT	3 cut(s)	536, 591, 672
SseBI	AGGCCT	1 cut(s)	161
SspMI	CTAG	4 cut(s)	126, 153, 585, 733
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	2 cut(s)	41, 717
TaaI	ACNGT	2 cut(s)	423, 490
TaqI	TCGA	2 cut(s)	354, 450
TasI	AATT	3 cut(s)	536, 591, 672
TatI	WGTACW	2 cut(s)	423, 503
Tru1I	TTAA	4 cut(s)	9, 279, 327, 479
Tru9I	TTAA	4 cut(s)	9, 279, 327, 479
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	3 cut(s)	279, 432, 632
VpaK11BI	GGWCC	1 cut(s)	729
XceI	RCATGY	1 cut(s)	123
XspI	CTAG	4 cut(s)	126, 153, 585, 733
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.