Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006582

Physical Location & Seq

Genomic Coordinates Forward (+)

2952394 .. 2955094

Gene Structure 2701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTTTCACTGATGAGTTGAACACTCTCAACAACGCTTTCTCAGGGCTTGGAGTTGATGAGAAGTCATTGATATCGATACTGGGAAACTCCCATCCAGAGGAGAGGAAATGTTTCAGGAAAGGAACTCCCCATCTGTTCAAAGAGGATGAACGCCTCTTTGAGAGATGGAATGATGAACGTGTCAGGCTTCTCAAGCATGAATTCATGCGCTTTAAGAATGCTGTGGTGTTGTGGGCTATGCATCCATGGGAAAGAGATGCTCGCTTGGTGAAGGAGGCCTTGAAGAAAGGAACTGAGGTCCATGGTGTCATTGTAGAGATTGCATGCACTAGATCCTCAGAAGAGCTATTAGGAGCTAGGAAGGCCTACCATTCCCTCTTTGACCACTCCATTGAAGAAGATGTTGCCTACCACATTGATGGCCCTGAAAGCAAGCTCTTGGTTGCACTTGTGAGTGCCTATAGGTATGAAGGAGCAAAGGTTAACGATGCGACTGCAAAATCTGAGGCACAAACACTTTATCATGTGATTAAGAACACAGATAACACAAATCCCATTGAAGATGATGAGGTTATTAGGATACTATCAACAAGGAGCAAGGCTCATCTCCAAGTAGTATATAAACACTACAAGGAGATTTCTGGCAACAACATGAATGAGGATCTTGGTGCTGATTTGAGGTTAAAAGAGACGGTGCAATGCCTATGTACTCCTCACACATATTTCAGCAAGGTGTTGGAAGTGGCATTGAGGAATGATGTGGACAAGAACACCAAAAAGGGACTGACTAGAGTAATTGTGACCCGAGCTGACACAGATATGAAACAGATTAAAGAGGAATACCAGAACCAGTATGGAGTTTCTCTATCCAGCAAAATTGAAGAGACAGCTCATGGGAACTACAAGGATTTCTTGCTTACCTTGGTTGCAAGGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0030054 GO:0033993 GO:0042221 GO:0050896 GO:0055044 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

314

Amino Acids

35.88

Weight (kDa)

6.37

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	86 - 151	1.5e-09	Annexin
Annexin	PF00191	171 - 227	1.4e-07	Annexin
Annexin	PF00191	261 - 309	6.9e-11	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38750 AT2G38750
fragaria_vesca	FvH4_7g02660 FvH4_7g02660 FvH4_7g02660
malus_domestica	MD02G1291200.v1.1 MD07G1035400.v1.1
prunus_persica	Prupe.2G031800_v2.0.a1
pyrus_communis	pycom02g24610 pycom07g02480
rosa_chinensis	RchiOBHm_Chr1g0321341
rosa_laevigata	RLG00000030427
rosa_multiflora	Rmu_sc0000960.1_g000008 Rmu_sc0000960.1_g000009
rosa_roxburghii	Rroxscaffold_160G00433980 Rroxscaffold_4G00327600 Rroxscaffold_4G00327810
rosa_rugosa	Rorug01G0032300 Rorug01G0033000
rosa_samantha	Rh1AG044700 Rh1BG042100 Rh1BG042900 Rh1CG047100 Rh1CG047500 Rh1DG051600
rosa_wichuraiana	Rw1G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	330, 672
AcsI	RAATTY	1 cut(s)	203
AfaI	GTAC	1 cut(s)	712
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	6 cut(s)	22, 142, 286, 398, 563, 884
AluBI	AGCT	5 cut(s)	349, 359, 439, 812, 893
AluI	AGCT	5 cut(s)	349, 359, 439, 812, 893
Alw26I	GTCTC	2 cut(s)	686, 881
AlwI	GGATC	2 cut(s)	330, 672
Ama87I	CYCGRG	1 cut(s)	807
AoxI	GGCC	3 cut(s)	279, 366, 424
ApoI	RAATTY	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	2 cut(s)	301, 425
AsuHPI	GGTGA	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	807
AvaII	GGWCC	1 cut(s)	301
BccI	CCATC	4 cut(s)	102, 141, 162, 416
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciVI	GTATCC	1 cut(s)	576
BcoDI	GTCTC	2 cut(s)	686, 881
BfaI	CTAG	3 cut(s)	333, 360, 792
BfmI	CTRYAG	1 cut(s)	463
BfuI	GTATCC	1 cut(s)	576
Bme18I	GGWCC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	807
BmgT120I	GGNCC	2 cut(s)	301, 425
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	3 cut(s)	250, 253, 481
BmuI	ACTGGG	1 cut(s)	92
BplI	GAGNNNNNCTC	2 cut(s)	589, 621
BpuEI	CTTGAG	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	248, 304, 924
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	87, 853
Bse3DI	GCAATG	1 cut(s)	707
BseCI	ATCGAT	1 cut(s)	77
BseDI	CCNNGG	3 cut(s)	248, 304, 924
BseGI	GGATG	3 cut(s)	94, 154, 244
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	707
BseMII	CTCAG	4 cut(s)	57, 288, 354, 498
BseNI	ACTGG	2 cut(s)	87, 853
BseRI	GAGGAG	2 cut(s)	116, 705
BshFI	GGCC	3 cut(s)	281, 368, 426
BshVI	ATCGAT	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	807
BslFI	GGGAC	1 cut(s)	798
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	2 cut(s)	686, 881
BsmBI	CGTCTC	1 cut(s)	686
BsmFI	GGGAC	1 cut(s)	798
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	3 cut(s)	281, 368, 426
BsoBI	CYCGRG	1 cut(s)	807
Bsp143I	GATC	2 cut(s)	335, 664
Bsp19I	CCATGG	2 cut(s)	248, 304
BspANI	GGCC	3 cut(s)	281, 368, 426
BspCNI	CTCAG	4 cut(s)	56, 289, 353, 499
BspDI	ATCGAT	1 cut(s)	77
BspPI	GGATC	2 cut(s)	330, 672
BspQI	GCTCTTC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	707
BsrI	ACTGG	2 cut(s)	87, 853
BssECI	CCNNGG	3 cut(s)	248, 304, 924
BssMI	GATC	2 cut(s)	335, 664
BssT1I	CCWWGG	3 cut(s)	248, 304, 924
Bst4CI	ACNGT	1 cut(s)	697
Bst6I	CTCTTC	2 cut(s)	339, 879
BstC8I	GCNNGC	3 cut(s)	265, 328, 437
BstDEI	CTNAG	5 cut(s)	43, 297, 340, 507, 939
BstDSI	CCRYGG	2 cut(s)	248, 304
BstF5I	GGATG	3 cut(s)	94, 154, 244
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	2 cut(s)	338, 667
BstMAI	GTCTC	2 cut(s)	686, 881
BstMBI	GATC	2 cut(s)	335, 664
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 365, 432
BstNSI	RCATGY	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	463
BstX2I	RGATCY	2 cut(s)	335, 664
BstXI	CCANNNNNNTGG	1 cut(s)	422
BstYI	RGATCY	2 cut(s)	335, 664
Bsu15I	ATCGAT	1 cut(s)	77
BsuI	GTATCC	1 cut(s)	576
BsuRI	GGCC	3 cut(s)	281, 368, 426
BsuTUI	ATCGAT	1 cut(s)	77
BtgI	CCRYGG	2 cut(s)	248, 304
BtsCI	GGATG	3 cut(s)	94, 154, 244
BtsIMutI	CAGTG	1 cut(s)	9
Cac8I	GCNNGC	3 cut(s)	265, 328, 437
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	2 cut(s)	301, 425
ClaI	ATCGAT	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	711
CviAII	CATG	8 cut(s)	200, 208, 249, 305, 327, 527, 655, 896
CviQI	GTAC	1 cut(s)	711
DdeI	CTNAG	5 cut(s)	43, 297, 340, 507, 939
DpnI	GATC	2 cut(s)	337, 666
DpnII	GATC	2 cut(s)	335, 664
Eam1104I	CTCTTC	2 cut(s)	339, 879
EarI	CTCTTC	2 cut(s)	339, 879
Eco130I	CCWWGG	3 cut(s)	248, 304, 924
Eco147I	AGGCCT	2 cut(s)	281, 368
Eco32I	GATATC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	301
Eco88I	CYCGRG	1 cut(s)	807
EcoRI	GAATTC	1 cut(s)	203
EcoRV	GATATC	1 cut(s)	75
EcoT14I	CCWWGG	3 cut(s)	248, 304, 924
EcoT22I	ATGCAT	1 cut(s)	246
ErhI	CCWWGG	3 cut(s)	248, 304, 924
Esp3I	CGTCTC	1 cut(s)	686
FaeI	CATG	8 cut(s)	203, 211, 252, 308, 330, 530, 658, 899
FalI	AAGNNNNNCTT	4 cut(s)	266, 298, 899, 931
FaqI	GGGAC	1 cut(s)	798
FatI	CATG	8 cut(s)	199, 207, 248, 304, 326, 526, 654, 895
FokI	GGATG	3 cut(s)	81, 161, 231
FspBI	CTAG	3 cut(s)	333, 360, 792
GlaI	GCGC	1 cut(s)	212
HaeIII	GGCC	3 cut(s)	281, 368, 426
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	8 cut(s)	203, 211, 252, 308, 330, 530, 658, 899
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HpaI	GTTAAC	1 cut(s)	487
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	2 cut(s)	487, 766
Hpy188I	TCNGA	2 cut(s)	343, 508
Hpy188III	TCNNGA	2 cut(s)	98, 118
Hpy8I	GTNNAC	2 cut(s)	487, 766
HpyAV	CCTTC	3 cut(s)	268, 358, 467
HpyCH4III	ACNGT	1 cut(s)	697
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	7 cut(s)	244, 326, 330, 449, 500, 700, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 365, 432
HpyF3I	CTNAG	5 cut(s)	43, 297, 340, 507, 939
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	8 cut(s)	203, 211, 252, 308, 330, 530, 658, 899
HspAI	GCGC	1 cut(s)	211
KspAI	GTTAAC	1 cut(s)	487
Kzo9I	GATC	2 cut(s)	335, 664
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	3 cut(s)	356, 476, 597
LweI	GCATC	3 cut(s)	250, 253, 481
MaeI	CTAG	3 cut(s)	333, 360, 792
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	802
MalI	GATC	2 cut(s)	337, 666
MboI	GATC	2 cut(s)	335, 664
MboII	GAAGA	6 cut(s)	298, 356, 410, 413, 575, 896
MflI	RGATCY	2 cut(s)	335, 664
MluCI	AATT	3 cut(s)	203, 798, 879
MmeI	TCCRAC	1 cut(s)	720
Mph1103I	ATGCAT	1 cut(s)	246
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	5 cut(s)	216, 486, 534, 686, 834
MslI	CAYNNNNRTG	2 cut(s)	420, 821
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	3 cut(s)	196, 365, 432
NcoI	CCATGG	2 cut(s)	248, 304
NdeII	GATC	2 cut(s)	335, 664
NlaIII	CATG	8 cut(s)	203, 211, 252, 308, 330, 530, 658, 899
NmuCI	GTSAC	1 cut(s)	802
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	1 cut(s)	330
PaeI	GCATGC	1 cut(s)	330
PceI	AGGCCT	2 cut(s)	281, 368
PciSI	GCTCTTC	1 cut(s)	339
PctI	GAATGC	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	113
PspPI	GGNCC	2 cut(s)	301, 425
PsuI	RGATCY	2 cut(s)	335, 664
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
RseI	CAYNNNNRTG	2 cut(s)	420, 821
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	5 cut(s)	216, 486, 534, 686, 834
Sau3AI	GATC	2 cut(s)	335, 664
Sau96I	GGNCC	2 cut(s)	301, 425
SfaNI	GCATC	3 cut(s)	250, 253, 481
SfcI	CTRYAG	1 cut(s)	463
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	2 cut(s)	420, 821
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SphI	GCATGC	1 cut(s)	330
Sse9I	AATT	3 cut(s)	203, 798, 879
SseBI	AGGCCT	2 cut(s)	281, 368
SspMI	CTAG	3 cut(s)	333, 360, 792
StuI	AGGCCT	2 cut(s)	281, 368
StyI	CCWWGG	3 cut(s)	248, 304, 924
TaaI	ACNGT	1 cut(s)	697
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	77
TasI	AATT	3 cut(s)	203, 798, 879
TatI	WGTACW	1 cut(s)	710
Tru1I	TTAA	5 cut(s)	216, 486, 534, 686, 834
Tru9I	TTAA	5 cut(s)	216, 486, 534, 686, 834
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	802
Tsp45I	GTSAC	1 cut(s)	802
TspDTI	ATGAA	7 cut(s)	165, 192, 196, 216, 486, 671, 839
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	1 cut(s)	203
XceI	RCATGY	1 cut(s)	330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	3 cut(s)	333, 360, 792
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.