AT2G38820

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007688
Physical Location & Seq
Forward (+)
16221815 .. 16223746
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38820.2

Sequence Viewer

Length: 645 bp
ATGCCATTACATATGAAAATCCAACCGATCGACGAATCCGATGTATCGGAAGAGGTACCTTACCCGGAGACGATGAGACAGATGCCGAAATCGAGGCTGAAGCGTCTCTTTGAGCGTCAGTTCACTAATAAGAACGTTTCGGAGAAATTTACCGGCTCAGATGTTGAGGCACCGCTTTCGAGAGGTAACTCTGGAGATTTTGAGCCGAGCTCTGTTTGTTTGGCCAAGATGGTTCTAAATTTTATGGAGGACAACAACGGCGGCGAGAAACAGCGGTGTGGACGTAGCCGATGTAACTGTTTTAGCGGGAGTGGTACAGAGAGCTCTGATGATGAAACTGAATGTTCTTCTGGTGAAGCTTGTGAGATCCTCAAGAGTTTGGTTCTCTGTAAGAGCATCCGTGTGAGGAATTTGCTGACTGATGTGACCAAGATTGCGGAAACAAGTAAGAATTGCAAGCTTAAAGATGGATCGTGCTTGAAAAGTGTGGCTAATGGGTTAGTGAGTTTAGGTTATGATGCGGCTCTATGCAAATCTCGCTGGGAGAAATCTCCTTCTTGTCCTGCTGGTATAGTCTATAACTCTTTATCTTCTGTGAAAAGGCAAAGTTGTAAAGCCAAGCCATTTCTTAGGCTTCTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

214

Amino Acids

23.58

Weight (kDa)

8.57

Isoelectric Point (pI)

60.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 76 - 282 7.3e-74 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 55
AccB1I GGYRCC 2 cut(s) 55, 169
AciI CCGC 6 cut(s) 173, 261, 274, 306, 437, 521
AclI AACGTT 1 cut(s) 135
AclWI GGATC 2 cut(s) 361, 478
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 3 cut(s) 146, 238, 409
AcuI CTGAAG 1 cut(s) 119
AfaI GTAC 2 cut(s) 57, 316
AgsI TTSAA 1 cut(s) 481
AluBI AGCT 4 cut(s) 210, 324, 359, 460
AluI AGCT 4 cut(s) 210, 324, 359, 460
Alw21I GWGCWC 2 cut(s) 212, 326
Alw26I GTCTC 3 cut(s) 62, 70, 110
AlwI GGATC 2 cut(s) 361, 478
AoxI GGCC 1 cut(s) 222
ApoI RAATTY 3 cut(s) 146, 238, 409
Asp718I GGTACC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 365
BalI TGGCCA 1 cut(s) 224
BanI GGYRCC 2 cut(s) 55, 169
BanII GRGCYC 2 cut(s) 212, 326
Bbv12I GWGCWC 2 cut(s) 212, 326
BccI CCATC 2 cut(s) 223, 461
BceAI ACGGC 1 cut(s) 274
BcgI CGANNNNNNTGC 2 cut(s) 159, 193
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 3 cut(s) 62, 70, 110
BisI GCNGC 2 cut(s) 262, 522
BlsI GCNGC 2 cut(s) 263, 523
Bme1390I CCNGG 1 cut(s) 65
BmiI GGNNCC 2 cut(s) 57, 171
BmrFI CCNGG 1 cut(s) 65
BmsI GCATC 3 cut(s) 72, 405, 508
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BpmI CTGGAG 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 1 cut(s) 65
Bse118I RCCGGY 1 cut(s) 152
BseGI GGATG 1 cut(s) 396
BseMII CTCAG 1 cut(s) 171
BseYI CCCAGC 1 cut(s) 540
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 1 cut(s) 224
BshNI GGYRCC 2 cut(s) 55, 169
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 2 cut(s) 212, 326
BsiSI CCGG 2 cut(s) 65, 153
BsmAI GTCTC 3 cut(s) 62, 70, 110
BsmBI CGTCTC 2 cut(s) 62, 110
BsnI GGCC 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 212, 326
Bsp143I GATC 3 cut(s) 27, 366, 470
BspACI CCGC 6 cut(s) 173, 261, 274, 306, 437, 521
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 170
BspLI GGNNCC 2 cut(s) 57, 171
BspPI GGATC 2 cut(s) 361, 478
BspT107I GGYRCC 2 cut(s) 55, 169
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssMI GATC 3 cut(s) 27, 366, 470
Bst4CI ACNGT 1 cut(s) 299
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 458
BstDEI CTNAG 2 cut(s) 157, 629
BstF5I GGATG 1 cut(s) 396
BstKTI GATC 3 cut(s) 30, 369, 473
BstMAI GTCTC 3 cut(s) 62, 70, 110
BstMBI GATC 3 cut(s) 27, 366, 470
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 537
BstSCI CCNGG 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 366
BstYI RGATCY 1 cut(s) 366
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 396
Cac8I GCNNGC 1 cut(s) 458
Cfr10I RCCGGY 1 cut(s) 152
CseI GACGC 2 cut(s) 92, 104
Csp6I GTAC 2 cut(s) 56, 315
CviQI GTAC 2 cut(s) 56, 315
DdeI CTNAG 2 cut(s) 157, 629
DpnI GATC 3 cut(s) 29, 368, 472
DpnII GATC 3 cut(s) 27, 366, 470
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Ecl136II GAGCTC 2 cut(s) 210, 324
Eco24I GRGCYC 2 cut(s) 212, 326
Eco53kI GAGCTC 2 cut(s) 210, 324
Eco57I CTGAAG 1 cut(s) 119
EcoICRI GAGCTC 2 cut(s) 210, 324
EcoT38I GRGCYC 2 cut(s) 212, 326
Esp3I CGTCTC 2 cut(s) 62, 110
FaiI YATR 7 cut(s) 12, 14, 245, 516, 529, 572, 579
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FauI CCCGC 1 cut(s) 299
FauNDI CATATG 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 262, 522
FokI GGATG 1 cut(s) 383
FriOI GRGCYC 2 cut(s) 212, 326
Fsp4HI GCNGC 2 cut(s) 262, 522
GluI GCNGC 2 cut(s) 262, 522
GsaI CCCAGC 1 cut(s) 544
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 1 cut(s) 224
HapII CCGG 2 cut(s) 65, 153
HgaI GACGC 2 cut(s) 92, 104
HindIII AAGCTT 2 cut(s) 357, 458
HinfI GANTC 1 cut(s) 35
HpaII CCGG 2 cut(s) 65, 153
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 2 cut(s) 123, 281
Hpy188I TCNGA 5 cut(s) 40, 49, 142, 160, 328
Hpy188III TCNNGA 3 cut(s) 180, 192, 373
Hpy8I GTNNAC 2 cut(s) 123, 281
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 564
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 2 cut(s) 135, 283
HpyCH4V TGCA 2 cut(s) 456, 531
HpyF10VI GCNNNNNNNGC 1 cut(s) 537
HpyF3I CTNAG 2 cut(s) 157, 629
HpySE526I ACGT 2 cut(s) 135, 283
KpnI GGTACC 1 cut(s) 59
Kzo9I GATC 3 cut(s) 27, 366, 470
LpnPI CCDG 7 cut(s) 78, 166, 177, 336, 526, 552, 576
LweI GCATC 3 cut(s) 72, 405, 508
MaeII ACGT 2 cut(s) 135, 283
MaeIII GTNAC 3 cut(s) 185, 293, 424
MalI GATC 3 cut(s) 29, 368, 472
MboI GATC 3 cut(s) 27, 366, 470
MboII GAAGA 3 cut(s) 62, 339, 582
MflI RGATCY 1 cut(s) 366
MhlI GDGCHC 2 cut(s) 212, 326
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 4 cut(s) 146, 238, 409, 451
MluNI TGGCCA 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 7 cut(s) 46, 87, 160, 176, 241, 380, 399
Mox20I TGGCCA 1 cut(s) 224
MscI TGGCCA 1 cut(s) 224
MseI TTAA 1 cut(s) 462
MslI CAYNNNNRTG 1 cut(s) 401
Msp20I TGGCCA 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 274
MspI CCGG 2 cut(s) 65, 153
MspR9I CCNGG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 537
NciI CCSGG 1 cut(s) 65
NdeI CATATG 1 cut(s) 12
NdeII GATC 3 cut(s) 27, 366, 470
NlaIV GGNNCC 2 cut(s) 57, 171
NmeAIII GCCGAG 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 424
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 2 cut(s) 263, 523
Ple19I CGATCG 1 cut(s) 30
Psp124BI GAGCTC 2 cut(s) 212, 326
Psp1406I AACGTT 1 cut(s) 135
PspFI CCCAGC 1 cut(s) 540
PspN4I GGNNCC 2 cut(s) 57, 171
PsuI RGATCY 1 cut(s) 366
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 2 cut(s) 57, 316
RsaNI GTAC 2 cut(s) 56, 315
RseI CAYNNNNRTG 1 cut(s) 401
SacI GAGCTC 2 cut(s) 212, 326
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 2 cut(s) 262, 522
Sau3AI GATC 3 cut(s) 27, 366, 470
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 2 cut(s) 212, 326
SfaNI GCATC 3 cut(s) 72, 405, 508
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 4 cut(s) 146, 238, 409, 451
SsiI CCGC 6 cut(s) 173, 261, 274, 306, 437, 521
SstI GAGCTC 2 cut(s) 212, 326
StyD4I CCNGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 2 cut(s) 138, 286
TaqI TCGA 3 cut(s) 30, 92, 179
TasI AATT 4 cut(s) 146, 238, 409, 451
TauI GCSGC 2 cut(s) 264, 524
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TseFI GTSAC 1 cut(s) 424
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 2 cut(s) 29, 348
TspGWI ACGGA 1 cut(s) 389
XapI RAATTY 3 cut(s) 146, 238, 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.