RchiOBHm_Chr6g0289671

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0007688
Physical Location & Seq
Reverse (-)
52752907 .. 52755464
2558 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25987

Sequence Viewer

Length: 1206 bp
ATGCCGTTTCCGATGAAAATACAGCCGATTGAGTCACACGCGGGGCCTGTGGAAGCGGAGACTAGGTTCGAACCGGTGAAGCCGGTGGCCAAGTCACGGTTCAAGAGGCTCTTCGAGCGACAGTTCACGAGCGTATTGAGAACAACGACGCCTGCGGCGGCGGCGGCGGCGGAGGAGAAGGTCGTCGTGTGCGGCGTCGAGGAGCTGCATTTCAACAAAGACGGCTTCACGGACTTGGCCGGCGGCGAGTTCGAGCCGAGCTCAGTCTGCTTGGCGAATATGGTGCAGAACTTCATCGAAGAGAGCAACGAGAAGCAATCGTCGGCCAGGTGCAGCCGGAACCGCTGTAACTGCTTCAACGGAAACTGCGACGACAGCTCCGACGACGAATCGGAGCCTTTCGGTTTCGGCGATTCCAATCTGGCTTCATCCGGCGAAGCATGTGAGCTTCTCAAGAGTTTGGTGTCGTGCCCAAGTCTATGCGAAAGGAATTTGCTAGCGGACACAGCTAGAATCGTCGAGAAAAACAAGATGTGCAAGCGTAAAGACGACAATGGCAGACTGGTTGTTACTGATAATCTGTTAGCTCTCGGATACGACGCTTCAGTCTGCAAAACTCGTTGGGAAAAATCCCCTTCCTATCCTTCCGGGGAGTACGAGTACATTGACGTGATCGTAAATGGGGAGAGGCTGCTAATCGACGTGGATTTCCGATCGGAGTTTGAGATTGCTCGACCGACGAAGAGCTACAAGGCGATTTTGCAGGCTCTTCCTTATATTTTCGTTGGGAAGCCCGATCGGCTGAGGAGGATCATCGGAATTGTTTCGGAGGCGGCGAAGCAGAGCCTGAAGAAGAAGGGAATGCACATTCCTCCGTGGAGGAAAGCAGAGTACATCAAAGCCAAGTGGCTCTCTCCTCACACCCGCCCCACAGTCTCTGTTAATTCCTCACCGGATTCCTTGCCCGAAAAGACCGAGACCCAGTCTTTGATCAAGTCCATGGAGTTTGAACAGAGTCGTACCGAGTTGGCAAAGTCGGTGGACTCTTCTGAGCCGGAGGAGTCGGTTTTTGAGTTTTCTGAGGGCGAAGAGGAGAAGGCGGTGGTGAAGGAGTGGAAGCCGCCGGAGGTGAAGCCCAGGATATCATCAGGGGTGAAGATTGTGACTGGTTTGGCTTCAGTCATGGAAGATGAAAATGAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

401

Amino Acids

44.77

Weight (kDa)

5.3

Isoelectric Point (pI)

58.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 93 - 309 2.3e-76 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 605
AccII CGCG 1 cut(s) 41
AclWI GGATC 1 cut(s) 818
AcoI YGGCCR 3 cut(s) 87, 237, 324
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 3 cut(s) 588, 869, 1161
AcyI GRCGYC 2 cut(s) 149, 195
AfaI GTAC 4 cut(s) 656, 662, 893, 1021
AfiI CCNNNNNNNGG 1 cut(s) 96
AgeI ACCGGT 1 cut(s) 73
AgsI TTSAA 4 cut(s) 103, 214, 358, 1010
AjiI CACGTC 2 cut(s) 670, 703
AjnI CCWGG 2 cut(s) 326, 1136
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AloI GAACNNNNNNTCC 2 cut(s) 50, 82
AluBI AGCT 7 cut(s) 205, 261, 378, 448, 509, 587, 747
AluI AGCT 7 cut(s) 205, 261, 378, 448, 509, 587, 747
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 3 cut(s) 53, 940, 971
AlwI GGATC 1 cut(s) 818
AlwNI CAGNNNCTG 2 cut(s) 847, 938
AoxI GGCC 4 cut(s) 44, 87, 237, 324
ApeKI GCWGC 3 cut(s) 205, 333, 691
ApoI RAATTY 1 cut(s) 490
ArsI GACNNNNNNTTYG 2 cut(s) 970, 1002
AsiGI ACCGGT 1 cut(s) 73
Asp700I GAANNNNTTC 1 cut(s) 823
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 649
AsuHPI GGTGA 5 cut(s) 88, 942, 1117, 1141, 1165
AsuII TTCGAA 1 cut(s) 69
AsuNHI GCTAGC 1 cut(s) 496
BaeGI GKGCMC 1 cut(s) 473
BalI TGGCCA 1 cut(s) 89
BanII GRGCYC 1 cut(s) 263
BauI CACGAG 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 263
BbvCI CCTCAGC 1 cut(s) 803
BbvI GCAGC 3 cut(s) 192, 345, 678
BceAI ACGGC 1 cut(s) 238
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 2 cut(s) 328, 1138
BciVI GTATCC 1 cut(s) 587
BclI TGATCA 1 cut(s) 990
BcnI CCSGG 1 cut(s) 649
BcoDI GTCTC 3 cut(s) 53, 940, 971
BfaI CTAG 3 cut(s) 63, 497, 510
BfuI GTATCC 1 cut(s) 587
BglI GCCNNNNNGGC 1 cut(s) 799
Bme1390I CCNGG 3 cut(s) 328, 649, 1138
BmgBI CACGTC 2 cut(s) 670, 703
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 3 cut(s) 45, 341, 396
BmrFI CCNGG 3 cut(s) 328, 649, 1138
BmrI ACTGGG 1 cut(s) 976
BmtI GCTAGC 1 cut(s) 500
BmuI ACTGGG 1 cut(s) 976
BplI GAGNNNNNCTC 2 cut(s) 245, 277
Bpu10I CCTNAGC 1 cut(s) 803
Bpu14I TTCGAA 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 649
BsaBI GATNNNNATC 1 cut(s) 417
BsaHI GRCGYC 2 cut(s) 149, 195
BsaI GGTCTC 1 cut(s) 971
BsaJI CCNNGG 4 cut(s) 648, 875, 999, 1136
BsaWI WCCGGW 2 cut(s) 73, 952
BsaXI ACNNNNNCTCC 6 cut(s) 50, 80, 362, 392, 644, 674
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse118I RCCGGY 3 cut(s) 73, 82, 239
Bse1I ACTGG 3 cut(s) 567, 982, 1171
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 2 cut(s) 328, 1138
BseDI CCNNGG 4 cut(s) 648, 875, 999, 1136
BseGI GGATG 1 cut(s) 428
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMII CTCAG 4 cut(s) 276, 794, 1041, 1071
BseNI ACTGG 3 cut(s) 567, 982, 1171
BseRI GAGGAG 6 cut(s) 188, 215, 820, 906, 1073, 1106
BseSI GKGCMC 1 cut(s) 473
BseXI GCAGC 3 cut(s) 192, 345, 678
BsgI GTGCAG 2 cut(s) 305, 352
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 3 cut(s) 716, 737, 799
BshFI GGCC 4 cut(s) 46, 89, 239, 326
BshTI ACCGGT 1 cut(s) 73
BsiEI CGRYCG 3 cut(s) 716, 737, 799
BsiHKAI GWGCWC 1 cut(s) 263
BsiSI CCGG 9 cut(s) 74, 83, 240, 337, 432, 648, 953, 1055, 1124
BslI CCNNNNNNNGG 1 cut(s) 96
BsmAI GTCTC 3 cut(s) 53, 940, 971
BsmI GAATGC 1 cut(s) 867
BsnI GGCC 4 cut(s) 46, 89, 239, 326
Bso31I GGTCTC 1 cut(s) 971
Bsp119I TTCGAA 1 cut(s) 69
Bsp1286I GDGCHC 2 cut(s) 263, 473
Bsp143I GATC 5 cut(s) 672, 713, 796, 810, 990
Bsp19I CCATGG 1 cut(s) 999
BspANI GGCC 4 cut(s) 46, 89, 239, 326
BspCNI CTCAG 4 cut(s) 275, 795, 1042, 1072
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 3 cut(s) 45, 341, 396
BspOI GCTAGC 1 cut(s) 500
BspPI GGATC 1 cut(s) 818
BspQI GCTCTTC 3 cut(s) 116, 737, 774
BspT104I TTCGAA 1 cut(s) 69
BspTNI GGTCTC 1 cut(s) 971
BsrFI RCCGGY 3 cut(s) 73, 82, 239
BsrI ACTGG 3 cut(s) 567, 982, 1171
BssAI RCCGGY 3 cut(s) 73, 82, 239
BssECI CCNNGG 4 cut(s) 648, 875, 999, 1136
BssMI GATC 5 cut(s) 672, 713, 796, 810, 990
BssNI GRCGYC 2 cut(s) 149, 195
BssSI CACGAG 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 999
Bst2BI CACGAG 1 cut(s) 127
Bst2UI CCWGG 2 cut(s) 328, 1138
Bst4CI ACNGT 3 cut(s) 99, 123, 934
Bst6I CTCTTC 6 cut(s) 116, 294, 737, 774, 1051, 1083
BstACI GRCGYC 2 cut(s) 149, 195
BstBI TTCGAA 1 cut(s) 69
BstC8I GCNNGC 5 cut(s) 153, 241, 498, 539, 765
BstDEI CTNAG 4 cut(s) 262, 803, 1050, 1080
BstDSI CCRYGG 2 cut(s) 875, 999
BstF5I GGATG 1 cut(s) 428
BstFNI CGCG 1 cut(s) 41
BstKTI GATC 5 cut(s) 675, 716, 799, 813, 993
BstMAI GTCTC 3 cut(s) 53, 940, 971
BstMBI GATC 5 cut(s) 672, 713, 796, 810, 990
BstMCI CGRYCG 3 cut(s) 716, 737, 799
BstNI CCWGG 2 cut(s) 328, 1138
BstNSI RCATGY 1 cut(s) 444
BstSCI CCNGG 3 cut(s) 326, 647, 1136
BstSLI GKGCMC 1 cut(s) 473
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 192, 345, 678
BsuI GTATCC 1 cut(s) 587
BsuRI GGCC 4 cut(s) 46, 89, 239, 326
BtgI CCRYGG 2 cut(s) 875, 999
BtrI CACGTC 2 cut(s) 670, 703
BtsCI GGATG 1 cut(s) 428
Cac8I GCNNGC 5 cut(s) 153, 241, 498, 539, 765
CaiI CAGNNNCTG 2 cut(s) 847, 938
Cfr10I RCCGGY 3 cut(s) 73, 82, 239
Cfr13I GGNCC 1 cut(s) 44
CseI GACGC 3 cut(s) 157, 184, 608
Csp6I GTAC 4 cut(s) 655, 661, 892, 1020
CspAI ACCGGT 1 cut(s) 73
CspCI CAANNNNNGTGG 2 cut(s) 1020, 1055
CviAII CATG 4 cut(s) 441, 1000, 1183, 1203
CviQI GTAC 4 cut(s) 655, 661, 892, 1020
DdeI CTNAG 4 cut(s) 262, 803, 1050, 1080
DpnI GATC 5 cut(s) 674, 715, 798, 812, 992
DpnII GATC 5 cut(s) 672, 713, 796, 810, 990
DrdI GACNNNNNNGTC 1 cut(s) 605
DseDI GACNNNNNNGTC 1 cut(s) 605
EaeI YGGCCR 3 cut(s) 87, 237, 324
Eam1104I CTCTTC 6 cut(s) 116, 294, 737, 774, 1051, 1083
EarI CTCTTC 6 cut(s) 116, 294, 737, 774, 1051, 1083
EciI GGCGGA 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 999
Eco24I GRGCYC 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 971
Eco32I GATATC 1 cut(s) 1143
Eco53kI GAGCTC 1 cut(s) 261
Eco57I CTGAAG 3 cut(s) 588, 869, 1161
EcoICRI GAGCTC 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 326, 1136
EcoRV GATATC 1 cut(s) 1143
EcoT14I CCWWGG 1 cut(s) 999
EcoT38I GRGCYC 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 999
FaeI CATG 4 cut(s) 444, 1003, 1186, 1206
FaiI YATR 7 cut(s) 281, 442, 481, 777, 1001, 1184, 1204
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 4 cut(s) 440, 999, 1182, 1202
FauI CCCGC 2 cut(s) 34, 932
FbaI TGATCA 1 cut(s) 990
FokI GGATG 1 cut(s) 415
FriOI GRGCYC 1 cut(s) 263
FspBI CTAG 3 cut(s) 63, 497, 510
HaeIII GGCC 4 cut(s) 46, 89, 239, 326
HapII CCGG 9 cut(s) 74, 83, 240, 337, 432, 648, 953, 1055, 1124
HgaI GACGC 3 cut(s) 157, 184, 608
Hin1I GRCGYC 2 cut(s) 149, 195
Hin1II CATG 4 cut(s) 444, 1003, 1186, 1206
HinfI GANTC 8 cut(s) 32, 389, 413, 513, 956, 1015, 1043, 1061
HpaII CCGG 9 cut(s) 74, 83, 240, 337, 432, 648, 953, 1055, 1124
HphI GGTGA 5 cut(s) 88, 942, 1117, 1141, 1165
Hpy166II GTNNAC 2 cut(s) 126, 1042
Hpy188III TCNNGA 4 cut(s) 103, 127, 454, 520
Hpy8I GTNNAC 2 cut(s) 126, 1042
HpyAV CCTTC 6 cut(s) 172, 645, 654, 850, 1090, 1102
HpyCH4III ACNGT 3 cut(s) 99, 123, 934
HpyCH4IV ACGT 2 cut(s) 669, 702
HpyCH4V TGCA 7 cut(s) 208, 286, 333, 537, 612, 763, 865
HpyF3I CTNAG 4 cut(s) 262, 803, 1050, 1080
HpySE526I ACGT 2 cut(s) 669, 702
Hsp92I GRCGYC 2 cut(s) 149, 195
Hsp92II CATG 4 cut(s) 444, 1003, 1186, 1206
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 990
Kzo9I GATC 5 cut(s) 672, 713, 796, 810, 990
LguI GCTCTTC 3 cut(s) 116, 737, 774
LmnI GCTCC 3 cut(s) 202, 383, 394
Lsp1109I GCAGC 3 cut(s) 192, 345, 678
MaeI CTAG 3 cut(s) 63, 497, 510
MaeII ACGT 2 cut(s) 669, 702
MaeIII GTNAC 5 cut(s) 33, 93, 347, 568, 1162
MalI GATC 5 cut(s) 674, 715, 798, 812, 992
MboI GATC 5 cut(s) 672, 713, 796, 810, 990
MhlI GDGCHC 2 cut(s) 263, 473
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 3 cut(s) 490, 819, 943
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 4 cut(s) 41, 1024, 1037, 1070
MmeI TCCRAC 1 cut(s) 405
Mox20I TGGCCA 1 cut(s) 89
MroNI GCCGGC 1 cut(s) 239
MroXI GAANNNNTTC 1 cut(s) 823
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 942
MslI CAYNNNNRTG 1 cut(s) 668
Msp20I TGGCCA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 345
MspI CCGG 9 cut(s) 74, 83, 240, 337, 432, 648, 953, 1055, 1124
MspR9I CCNGG 3 cut(s) 328, 649, 1138
Mva1269I GAATGC 1 cut(s) 867
MvaI CCWGG 2 cut(s) 328, 1138
MvnI CGCG 1 cut(s) 41
NaeI GCCGGC 1 cut(s) 241
NciI CCSGG 1 cut(s) 649
NcoI CCATGG 1 cut(s) 999
NdeII GATC 5 cut(s) 672, 713, 796, 810, 990
NgoMIV GCCGGC 1 cut(s) 239
NheI GCTAGC 1 cut(s) 496
NlaIII CATG 4 cut(s) 444, 1003, 1186, 1206
NlaIV GGNNCC 3 cut(s) 45, 341, 396
NmeAIII GCCGAG 1 cut(s) 282
NmuCI GTSAC 3 cut(s) 33, 93, 1162
NspI RCATGY 1 cut(s) 444
NspV TTCGAA 1 cut(s) 69
PciSI GCTCTTC 3 cut(s) 116, 737, 774
PcsI WCGNNNNNNNCGW 5 cut(s) 192, 366, 378, 408, 833
PctI GAATGC 1 cut(s) 867
PdiI GCCGGC 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 823
PfeI GAWTC 4 cut(s) 389, 413, 513, 956
PflFI GACNNNGTC 1 cut(s) 982
PinAI ACCGGT 1 cut(s) 73
Ple19I CGATCG 2 cut(s) 716, 799
PleI GAGTC 4 cut(s) 40, 1023, 1037, 1069
PpsI GAGTC 4 cut(s) 40, 1023, 1037, 1069
Psp124BI GAGCTC 1 cut(s) 263
Psp6I CCWGG 2 cut(s) 326, 1136
PspGI CCWGG 2 cut(s) 326, 1136
PspN4I GGNNCC 3 cut(s) 45, 341, 396
PspPI GGNCC 1 cut(s) 44
PstNI CAGNNNCTG 2 cut(s) 847, 938
PsyI GACNNNGTC 1 cut(s) 982
PvuI CGATCG 2 cut(s) 716, 799
RsaI GTAC 4 cut(s) 656, 662, 893, 1021
RsaNI GTAC 4 cut(s) 655, 661, 892, 1020
RseI CAYNNNNRTG 1 cut(s) 668
SacI GAGCTC 1 cut(s) 263
SapI GCTCTTC 3 cut(s) 116, 737, 774
SaqAI TTAA 1 cut(s) 942
Sau3AI GATC 5 cut(s) 672, 713, 796, 810, 990
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 4 cut(s) 41, 1024, 1037, 1070
ScrFI CCNGG 3 cut(s) 328, 649, 1138
SduI GDGCHC 2 cut(s) 263, 473
SfuI TTCGAA 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 668
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 3 cut(s) 490, 819, 943
SspMI CTAG 3 cut(s) 63, 497, 510
SstI GAGCTC 1 cut(s) 263
StyD4I CCNGG 3 cut(s) 326, 647, 1136
StyI CCWWGG 1 cut(s) 999
TaaI ACNGT 3 cut(s) 99, 123, 934
TaiI ACGT 2 cut(s) 672, 705
TaqI TCGA 8 cut(s) 69, 114, 198, 252, 297, 519, 699, 733
TaqII GACCGA 2 cut(s) 751, 989
TasI AATT 3 cut(s) 490, 819, 943
TatI WGTACW 2 cut(s) 660, 891
TauI GCSGC 9 cut(s) 158, 161, 164, 167, 170, 195, 246, 836, 1123
TfiI GAWTC 4 cut(s) 389, 413, 513, 956
Tru1I TTAA 1 cut(s) 942
Tru9I TTAA 1 cut(s) 942
TseFI GTSAC 3 cut(s) 33, 93, 1162
TseI GCWGC 3 cut(s) 205, 333, 691
Tsp45I GTSAC 3 cut(s) 33, 93, 1162
TspDTI ATGAA 4 cut(s) 29, 283, 417, 1206
TspGWI ACGGA 3 cut(s) 245, 375, 864
Tth111I GACNNNGTC 1 cut(s) 982
XapI RAATTY 1 cut(s) 490
XceI RCATGY 1 cut(s) 444
XmnI GAANNNNTTC 1 cut(s) 823
XspI CTAG 3 cut(s) 63, 497, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.