Rh6AG317400

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007688
Physical Location & Seq
Reverse (-)
51624774 .. 51626168
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG317400.1

Sequence Viewer

Length: 1194 bp
ATGAAAATACAGCCGATTGAGTCACACGCGGGGCCTGTGGAAGCGGAGACTAGGTTCGAACCGGTGAAGCCGGTGGCCAAGTCACGGTTCAAGAGGCTCTTCGAGCGGCAGTTCACGAGCGTATTGAGAACAACGACGCCTGCAGCGGCGGCGGCTGCGGAGGAGAAGGTCGTCGTCTGCGGCGTCGAGGAGCTGCATTTCAACAAAGACGGCTTCACGGACTTGGCCGGCGGCGAGTTCGAGCCGAGCTCAGTCTGCTTGGCGAATATGGTGCAGAACTTCATCGAAGAGAGCAACGAGAAGCAATCGTCGGCCAGGTGCAGCCGGAACCGCTGTAACTGCTTCAACGGAAACTGCGACGACAGCTCCGACGACGAATCGGAGCCTTTCGGTTTCGGCGATTCCAATCTGGCTTCATCCGGCGAAGCATGTGAGCTTCTCAAGAGTTTGGTGTCGTGCCCGAGTCTATGCGAAAGGAATTTGCTAGCGGACACAGCTAGAATCGTCGAGAAAAACAAGATGTGCAAGCGTAAAGACGACAATGGCAGACTGGTTGTTTCTGATAATCTGTTAGCTCTCGGATACGACGCTTCAGTCTGCAAAACTCGTTGGGAAAAATCCCCTTCCTATCCTTCCGGGGAGTACGAGTACATTGACGTGATCGTAAATGGGGAGAGGCTGCTAATCGACGTGGATTTCCGATCGGAGTTTGAGATTGCTCGACCGACGAAGAGCTACAAGGCGATTTTGCAGGCTCTTCCTTATATTTTCGTTGGGAAGCCCGATCGGCTGAGGAGGATCATCGGAATTGTTTCGGAGGCGGCGAAGCAGAGCCTGAAGAAGAAGGGAATGCACATTCCTCCGTGGAGGAAAGCAGAGTACATCAAAGCCAAGTGGCTCTCTCCTCACACCCGCGCCATAGTCTCTGTTAATTCCTCACCGGTTTCCTTGCCCGAAAAGACCAAGACCCAGTCTTTGATCAAGTCCATGGAGTTTGAACAGAGTCGTACCGAGTTGGCAAAGTCGGTGGACTCTTCTGAGCCGGAGGAGTCGGTTTTTGAGTTTTCTGAGGGCGAAGAGGAGAAGGCGGTGGTGAAGGAGTGGAAGCCGCCGGAGGTGAAGCCCAGGAGATCATCAGGGGTGAAGATTGTGACTGGTTTGGCTTCAGTCATGGAAGATGAAAATGAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

397

Amino Acids

44.29

Weight (kDa)

5.63

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 89 - 305 2.4e-76 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 593
AccBSI CCGCTC 1 cut(s) 106
AccII CGCG 2 cut(s) 29, 915
AclWI GGATC 1 cut(s) 806
AcoI YGGCCR 3 cut(s) 75, 225, 312
AcsI RAATTY 1 cut(s) 478
AcuI CTGAAG 3 cut(s) 576, 857, 1149
AcyI GRCGYC 2 cut(s) 137, 183
AfaI GTAC 4 cut(s) 644, 650, 881, 1009
AfiI CCNNNNNNNGG 1 cut(s) 84
AgeI ACCGGT 2 cut(s) 61, 940
AgsI TTSAA 4 cut(s) 91, 202, 346, 998
AjiI CACGTC 2 cut(s) 658, 691
AjnI CCWGG 2 cut(s) 314, 1124
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AloI GAACNNNNNNTCC 2 cut(s) 38, 70
AluBI AGCT 7 cut(s) 193, 249, 366, 436, 497, 575, 735
AluI AGCT 7 cut(s) 193, 249, 366, 436, 497, 575, 735
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 2 cut(s) 41, 928
AlwI GGATC 1 cut(s) 806
AlwNI CAGNNNCTG 1 cut(s) 835
Ama87I CYCGRG 1 cut(s) 460
AoxI GGCC 4 cut(s) 32, 75, 225, 312
ApeKI GCWGC 5 cut(s) 143, 155, 193, 321, 679
ApoI RAATTY 1 cut(s) 478
ArsI GACNNNNNNTTYG 2 cut(s) 958, 990
AsiGI ACCGGT 2 cut(s) 61, 940
Asp700I GAANNNNTTC 1 cut(s) 811
AspLEI GCGC 1 cut(s) 917
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 637
AsuHPI GGTGA 5 cut(s) 76, 930, 1105, 1129, 1153
AsuII TTCGAA 1 cut(s) 57
AsuNHI GCTAGC 1 cut(s) 484
AvaI CYCGRG 1 cut(s) 460
BaeGI GKGCMC 1 cut(s) 461
BalI TGGCCA 1 cut(s) 77
BanII GRGCYC 1 cut(s) 251
BauI CACGAG 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 251
BbvCI CCTCAGC 1 cut(s) 791
BbvI GCAGC 5 cut(s) 142, 155, 180, 333, 666
BceAI ACGGC 1 cut(s) 226
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BciT130I CCWGG 2 cut(s) 316, 1126
BciVI GTATCC 1 cut(s) 575
BclI TGATCA 1 cut(s) 978
BcnI CCSGG 1 cut(s) 637
BcoDI GTCTC 2 cut(s) 41, 928
BfaI CTAG 3 cut(s) 51, 485, 498
BfmI CTRYAG 1 cut(s) 141
BfuI GTATCC 1 cut(s) 575
BglI GCCNNNNNGGC 1 cut(s) 787
Bme1390I CCNGG 3 cut(s) 316, 637, 1126
BmeT110I CYCGRG 1 cut(s) 460
BmgBI CACGTC 2 cut(s) 658, 691
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 3 cut(s) 33, 329, 384
BmrFI CCNGG 3 cut(s) 316, 637, 1126
BmrI ACTGGG 1 cut(s) 964
BmtI GCTAGC 1 cut(s) 488
BmuI ACTGGG 1 cut(s) 964
BplI GAGNNNNNCTC 2 cut(s) 233, 265
Bpu10I CCTNAGC 1 cut(s) 791
Bpu14I TTCGAA 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 425
BpuMI CCSGG 1 cut(s) 637
BsaBI GATNNNNATC 1 cut(s) 405
BsaHI GRCGYC 2 cut(s) 137, 183
BsaJI CCNNGG 4 cut(s) 636, 863, 987, 1124
BsaWI WCCGGW 2 cut(s) 61, 940
BsaXI ACNNNNNCTCC 6 cut(s) 38, 68, 350, 380, 632, 662
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse118I RCCGGY 4 cut(s) 61, 70, 227, 940
Bse1I ACTGG 3 cut(s) 555, 970, 1159
Bse8I GATNNNNATC 1 cut(s) 405
BseBI CCWGG 2 cut(s) 316, 1126
BseDI CCNNGG 4 cut(s) 636, 863, 987, 1124
BseGI GGATG 1 cut(s) 416
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMII CTCAG 4 cut(s) 264, 782, 1029, 1059
BseNI ACTGG 3 cut(s) 555, 970, 1159
BseRI GAGGAG 6 cut(s) 176, 203, 808, 894, 1061, 1094
BseSI GKGCMC 1 cut(s) 461
BseXI GCAGC 5 cut(s) 142, 155, 180, 333, 666
BsgI GTGCAG 2 cut(s) 293, 340
Bsh1236I CGCG 2 cut(s) 29, 915
Bsh1285I CGRYCG 3 cut(s) 704, 725, 787
BshFI GGCC 4 cut(s) 34, 77, 227, 314
BshTI ACCGGT 2 cut(s) 61, 940
BsiEI CGRYCG 3 cut(s) 704, 725, 787
BsiHKAI GWGCWC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 460
BsiSI CCGG 9 cut(s) 62, 71, 228, 325, 420, 636, 941, 1043, 1112
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 2 cut(s) 41, 928
BsmI GAATGC 1 cut(s) 855
BsnI GGCC 4 cut(s) 34, 77, 227, 314
BsoBI CYCGRG 1 cut(s) 460
Bsp119I TTCGAA 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 251, 461
Bsp143I GATC 6 cut(s) 660, 701, 784, 798, 978, 1130
Bsp19I CCATGG 1 cut(s) 987
BspANI GGCC 4 cut(s) 34, 77, 227, 314
BspCNI CTCAG 4 cut(s) 263, 783, 1030, 1060
BspFNI CGCG 2 cut(s) 29, 915
BspLI GGNNCC 3 cut(s) 33, 329, 384
BspMAI CTGCAG 1 cut(s) 145
BspOI GCTAGC 1 cut(s) 488
BspPI GGATC 1 cut(s) 806
BspQI GCTCTTC 3 cut(s) 104, 725, 762
BspT104I TTCGAA 1 cut(s) 57
BsrBI CCGCTC 1 cut(s) 106
BsrFI RCCGGY 4 cut(s) 61, 70, 227, 940
BsrI ACTGG 3 cut(s) 555, 970, 1159
BssAI RCCGGY 4 cut(s) 61, 70, 227, 940
BssECI CCNNGG 4 cut(s) 636, 863, 987, 1124
BssMI GATC 6 cut(s) 660, 701, 784, 798, 978, 1130
BssNI GRCGYC 2 cut(s) 137, 183
BssSI CACGAG 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 987
Bst2BI CACGAG 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 316, 1126
Bst4CI ACNGT 1 cut(s) 87
Bst6I CTCTTC 6 cut(s) 104, 282, 725, 762, 1039, 1071
BstACI GRCGYC 2 cut(s) 137, 183
BstBI TTCGAA 1 cut(s) 57
BstC8I GCNNGC 5 cut(s) 141, 229, 486, 527, 753
BstDEI CTNAG 4 cut(s) 250, 791, 1038, 1068
BstDSI CCRYGG 2 cut(s) 863, 987
BstF5I GGATG 1 cut(s) 416
BstFNI CGCG 2 cut(s) 29, 915
BstHHI GCGC 1 cut(s) 917
BstKTI GATC 6 cut(s) 663, 704, 787, 801, 981, 1133
BstMAI GTCTC 2 cut(s) 41, 928
BstMBI GATC 6 cut(s) 660, 701, 784, 798, 978, 1130
BstMCI CGRYCG 3 cut(s) 704, 725, 787
BstNI CCWGG 2 cut(s) 316, 1126
BstNSI RCATGY 1 cut(s) 432
BstSCI CCNGG 3 cut(s) 314, 635, 1124
BstSFI CTRYAG 1 cut(s) 141
BstSLI GKGCMC 1 cut(s) 461
BstUI CGCG 2 cut(s) 29, 915
BstV1I GCAGC 5 cut(s) 142, 155, 180, 333, 666
BsuI GTATCC 1 cut(s) 575
BsuRI GGCC 4 cut(s) 34, 77, 227, 314
BtgI CCRYGG 2 cut(s) 863, 987
BtrI CACGTC 2 cut(s) 658, 691
BtsCI GGATG 1 cut(s) 416
Cac8I GCNNGC 5 cut(s) 141, 229, 486, 527, 753
CaiI CAGNNNCTG 1 cut(s) 835
CfoI GCGC 1 cut(s) 917
Cfr10I RCCGGY 4 cut(s) 61, 70, 227, 940
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 3 cut(s) 145, 172, 596
Csp6I GTAC 4 cut(s) 643, 649, 880, 1008
CspAI ACCGGT 2 cut(s) 61, 940
CspCI CAANNNNNGTGG 2 cut(s) 1008, 1043
CviAII CATG 4 cut(s) 429, 988, 1171, 1191
CviQI GTAC 4 cut(s) 643, 649, 880, 1008
DdeI CTNAG 4 cut(s) 250, 791, 1038, 1068
DpnI GATC 6 cut(s) 662, 703, 786, 800, 980, 1132
DpnII GATC 6 cut(s) 660, 701, 784, 798, 978, 1130
DrdI GACNNNNNNGTC 1 cut(s) 593
DseDI GACNNNNNNGTC 1 cut(s) 593
EaeI YGGCCR 3 cut(s) 75, 225, 312
Eam1104I CTCTTC 6 cut(s) 104, 282, 725, 762, 1039, 1071
EarI CTCTTC 6 cut(s) 104, 282, 725, 762, 1039, 1071
Ecl136II GAGCTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 987
Eco24I GRGCYC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 249
Eco57I CTGAAG 3 cut(s) 576, 857, 1149
Eco88I CYCGRG 1 cut(s) 460
EcoICRI GAGCTC 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 32
EcoRII CCWGG 2 cut(s) 314, 1124
EcoT14I CCWWGG 1 cut(s) 987
EcoT38I GRGCYC 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 987
FaeI CATG 4 cut(s) 432, 991, 1174, 1194
FaiI YATR 8 cut(s) 269, 430, 469, 765, 920, 989, 1172, 1192
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FatI CATG 4 cut(s) 428, 987, 1170, 1190
FauI CCCGC 2 cut(s) 22, 920
FbaI TGATCA 1 cut(s) 978
FokI GGATG 1 cut(s) 403
FriOI GRGCYC 1 cut(s) 251
FspBI CTAG 3 cut(s) 51, 485, 498
GlaI GCGC 1 cut(s) 916
HaeIII GGCC 4 cut(s) 34, 77, 227, 314
HapII CCGG 9 cut(s) 62, 71, 228, 325, 420, 636, 941, 1043, 1112
HgaI GACGC 3 cut(s) 145, 172, 596
HhaI GCGC 1 cut(s) 917
Hin1I GRCGYC 2 cut(s) 137, 183
Hin1II CATG 4 cut(s) 432, 991, 1174, 1194
Hin6I GCGC 1 cut(s) 915
HinP1I GCGC 1 cut(s) 915
HinfI GANTC 8 cut(s) 20, 377, 401, 463, 501, 1003, 1031, 1049
HpaII CCGG 9 cut(s) 62, 71, 228, 325, 420, 636, 941, 1043, 1112
HphI GGTGA 5 cut(s) 76, 930, 1105, 1129, 1153
Hpy166II GTNNAC 2 cut(s) 114, 1030
Hpy188III TCNNGA 4 cut(s) 91, 115, 442, 508
Hpy8I GTNNAC 2 cut(s) 114, 1030
HpyAV CCTTC 6 cut(s) 160, 633, 642, 838, 1078, 1090
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4IV ACGT 2 cut(s) 657, 690
HpyCH4V TGCA 8 cut(s) 143, 196, 274, 321, 525, 600, 751, 853
HpyF3I CTNAG 4 cut(s) 250, 791, 1038, 1068
HpySE526I ACGT 2 cut(s) 657, 690
Hsp92I GRCGYC 2 cut(s) 137, 183
Hsp92II CATG 4 cut(s) 432, 991, 1174, 1194
HspAI GCGC 1 cut(s) 915
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 978
Kzo9I GATC 6 cut(s) 660, 701, 784, 798, 978, 1130
LguI GCTCTTC 3 cut(s) 104, 725, 762
LmnI GCTCC 3 cut(s) 190, 371, 382
Lsp1109I GCAGC 5 cut(s) 142, 155, 180, 333, 666
MaeI CTAG 3 cut(s) 51, 485, 498
MaeII ACGT 2 cut(s) 657, 690
MaeIII GTNAC 4 cut(s) 21, 81, 335, 1150
MalI GATC 6 cut(s) 662, 703, 786, 800, 980, 1132
MbiI CCGCTC 1 cut(s) 106
MboI GATC 6 cut(s) 660, 701, 784, 798, 978, 1130
MhlI GDGCHC 2 cut(s) 251, 461
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 3 cut(s) 478, 807, 931
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 5 cut(s) 29, 472, 1012, 1025, 1058
MmeI TCCRAC 1 cut(s) 393
Mox20I TGGCCA 1 cut(s) 77
MroNI GCCGGC 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 811
MscI TGGCCA 1 cut(s) 77
MseI TTAA 1 cut(s) 930
MslI CAYNNNNRTG 1 cut(s) 656
Msp20I TGGCCA 1 cut(s) 77
MspA1I CMGCKG 2 cut(s) 146, 333
MspI CCGG 9 cut(s) 62, 71, 228, 325, 420, 636, 941, 1043, 1112
MspR9I CCNGG 3 cut(s) 316, 637, 1126
Mva1269I GAATGC 1 cut(s) 855
MvaI CCWGG 2 cut(s) 316, 1126
MvnI CGCG 2 cut(s) 29, 915
NaeI GCCGGC 1 cut(s) 229
NciI CCSGG 1 cut(s) 637
NcoI CCATGG 1 cut(s) 987
NdeII GATC 6 cut(s) 660, 701, 784, 798, 978, 1130
NgoMIV GCCGGC 1 cut(s) 227
NheI GCTAGC 1 cut(s) 484
NlaIII CATG 4 cut(s) 432, 991, 1174, 1194
NlaIV GGNNCC 3 cut(s) 33, 329, 384
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 3 cut(s) 21, 81, 1150
NspI RCATGY 1 cut(s) 432
NspV TTCGAA 1 cut(s) 57
PciSI GCTCTTC 3 cut(s) 104, 725, 762
PcsI WCGNNNNNNNCGW 5 cut(s) 180, 354, 366, 396, 821
PctI GAATGC 1 cut(s) 855
PdiI GCCGGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 811
PfeI GAWTC 3 cut(s) 377, 401, 501
PflFI GACNNNGTC 1 cut(s) 970
PinAI ACCGGT 2 cut(s) 61, 940
Ple19I CGATCG 2 cut(s) 704, 787
PleI GAGTC 5 cut(s) 28, 471, 1011, 1025, 1057
PpsI GAGTC 5 cut(s) 28, 471, 1011, 1025, 1057
Psp124BI GAGCTC 1 cut(s) 251
Psp6I CCWGG 2 cut(s) 314, 1124
PspGI CCWGG 2 cut(s) 314, 1124
PspN4I GGNNCC 3 cut(s) 33, 329, 384
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 835
PsyI GACNNNGTC 1 cut(s) 970
PvuI CGATCG 2 cut(s) 704, 787
RsaI GTAC 4 cut(s) 644, 650, 881, 1009
RsaNI GTAC 4 cut(s) 643, 649, 880, 1008
RseI CAYNNNNRTG 1 cut(s) 656
SacI GAGCTC 1 cut(s) 251
SapI GCTCTTC 3 cut(s) 104, 725, 762
SaqAI TTAA 1 cut(s) 930
Sau3AI GATC 6 cut(s) 660, 701, 784, 798, 978, 1130
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 5 cut(s) 29, 472, 1012, 1025, 1058
ScrFI CCNGG 3 cut(s) 316, 637, 1126
SduI GDGCHC 2 cut(s) 251, 461
SfcI CTRYAG 1 cut(s) 141
SfuI TTCGAA 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 656
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 3 cut(s) 478, 807, 931
SspMI CTAG 3 cut(s) 51, 485, 498
SstI GAGCTC 1 cut(s) 251
StyD4I CCNGG 3 cut(s) 314, 635, 1124
StyI CCWWGG 1 cut(s) 987
TaaI ACNGT 1 cut(s) 87
TaiI ACGT 2 cut(s) 660, 693
TaqI TCGA 8 cut(s) 57, 102, 186, 240, 285, 507, 687, 721
TaqII GACCGA 1 cut(s) 739
TasI AATT 3 cut(s) 478, 807, 931
TatI WGTACW 2 cut(s) 648, 879
TauI GCSGC 8 cut(s) 109, 149, 152, 155, 183, 234, 824, 1111
TfiI GAWTC 3 cut(s) 377, 401, 501
Tru1I TTAA 1 cut(s) 930
Tru9I TTAA 1 cut(s) 930
TseFI GTSAC 3 cut(s) 21, 81, 1150
TseI GCWGC 5 cut(s) 143, 155, 193, 321, 679
Tsp45I GTSAC 3 cut(s) 21, 81, 1150
TspDTI ATGAA 4 cut(s) 17, 271, 405, 1194
TspGWI ACGGA 3 cut(s) 233, 363, 852
Tth111I GACNNNGTC 1 cut(s) 970
XapI RAATTY 1 cut(s) 478
XceI RCATGY 1 cut(s) 432
XmnI GAANNNNTTC 1 cut(s) 811
XspI CTAG 3 cut(s) 51, 485, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.