MD03G1256000.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0007688
Physical Location & Seq
Reverse (-)
34340617 .. 34343303
2687 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1256000.v1.1.491

Sequence Viewer

Length: 1176 bp
ATGCCTTTTTCATTGAAAATCCAACCGATCGATTTTCGCACGAGTTCTGACGACCTGACTCGGTTCGAGCCGGTCAAGCCGGTGGCCGCGAAGTCGCGGCTCAAGCGGCTCTTCGAGCGGCCGTTCACTAACGTACTGAAAAGCTCTGCAGCGGCAGAGAAGGCCGCCGTCGGAATCGAGGAGCCGCATTTCAACAAGGACGGCGTCGTCGCAGGCGGCGGCGGAGGATCGGCCGAGTTCGAGCCGAGTTCGATGTGCTTGACGAAGATGGTCCAGAATTTCATCGAGGACAGCAACGAGAAGCAATCATCGGCTGTGGCGCGGTGCAGCCGGAACCGCTGCAACTGCTTCAACGGCAACGACAGTTCGGGCGACGAATCGGAGCTGTTTGGCGGTTTCGGCGACTCCAACGTGGCATCCTCCGCCGAAGCATGCGAGCTTCTCAAGGGTTTGGTTTCGTGCCAGAGCGTCAGCGAGAGGAACTTGCTAGCCGAAGCGGCGAAGATCGTTGAGAAAAACAAGGCCTGCTGCAAGCGGAAAGACGACGCCTGCAGAACCGTCGTTTCTGATAGTCTGTTAGCTCTCGGATACGACGCGTCGGTTTGCAAATCTCGTTGGGAAAAAGCGCCTTCCTATCCCGCCGGAGAATATGATTACGTTGACGTGATCGTCAGAGGAGAGAGACTGCTGATCGACGTCGATTTCAGATCGGAATTCGAGATCGCACGGCCGTCGAAGAGCTACAAGGCGATTCTCCAAACGCTTCCGTACATCTTCGTCGGGAAACCCGACCGTCTGTGGCGGATCATCGCGGTGGTGTCGGAGGCGGCTAAACAAAGCTTGAAAAAGAAGGGGATGCACGTTCCGCCGTGGAGGAAAGCGGAGTACATCAAGGCCAAGTGGCTGTCTCCTCACAGTCGAGCCACGCCGGCGCCTTCCGATTCGACTCAGCCTCCGGAGGCCGGCGAGTTGGGACAGAGTCAGGGCGAGAACTCGCGGGAGGATGATGAGTTGGGCTGCGAGTCGGTGTTTGAGATGTCGGCGAGTTCTGGTGAGGAGGAAAATGCGGTGGTGGTGAAGGAATGGAAGCCGCCGGAGCTGAAGCCCAAGAGATCGTCGGTGACCGGAGTAAAGATCGTGACTGGTTTGGCTTCCGTCATGGAAGATGAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

392

Amino Acids

42.78

Weight (kDa)

5.75

Isoelectric Point (pI)

60.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 89 - 307 8.7e-75 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 206, 668
AatII GACGTC 1 cut(s) 699
AccB1I GGYRCC 1 cut(s) 931
AccBSI CCGCTC 1 cut(s) 118
AccII CGCG 6 cut(s) 89, 97, 322, 596, 812, 997
AccIII TCCGGA 1 cut(s) 955
AclWI GGATC 2 cut(s) 235, 812
AcoI YGGCCR 4 cut(s) 84, 119, 231, 728
AcsI RAATTY 2 cut(s) 277, 713
AcuI CTGAAG 1 cut(s) 1121
AcyI GRCGYC 4 cut(s) 204, 546, 696, 932
AfaI GTAC 3 cut(s) 135, 770, 887
AfiI CCNNNNNNNGG 1 cut(s) 962
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 4 cut(s) 16, 193, 352, 844
AjiI CACGTC 1 cut(s) 664
AluBI AGCT 7 cut(s) 144, 385, 439, 581, 741, 840, 1099
AluI AGCT 7 cut(s) 144, 385, 439, 581, 741, 840, 1099
Alw26I GTCTC 2 cut(s) 676, 912
AlwI GGATC 2 cut(s) 235, 812
Aor13HI TCCGGA 1 cut(s) 955
AoxI GGCC 8 cut(s) 84, 119, 162, 231, 522, 728, 894, 960
ApeKI GCWGC 5 cut(s) 149, 327, 339, 528, 1017
ApoI RAATTY 2 cut(s) 277, 713
AspLEI GCGC 3 cut(s) 322, 628, 934
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 3 cut(s) 1064, 1087, 1132
AsuNHI GCTAGC 1 cut(s) 487
AvaII GGWCC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 931
BauI CACGAG 1 cut(s) 40
BbvI GCAGC 5 cut(s) 161, 326, 339, 515, 1004
BccI CCATC 1 cut(s) 262
BceAI ACGGC 7 cut(s) 106, 152, 217, 370, 715, 743, 853
BcgI CGANNNNNNTGC 4 cut(s) 541, 575, 714, 748
BciVI GTATCC 1 cut(s) 581
BcoDI GTCTC 2 cut(s) 676, 912
BfaI CTAG 1 cut(s) 488
BfmI CTRYAG 2 cut(s) 147, 550
BfoI RGCGCY 2 cut(s) 629, 935
BfuI GTATCC 1 cut(s) 581
BglI GCCNNNNNGGC 2 cut(s) 497, 929
Bme18I GGWCC 1 cut(s) 271
BmgBI CACGTC 1 cut(s) 664
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 3 cut(s) 183, 335, 933
BmsI GCATC 2 cut(s) 425, 846
BmtI GCTAGC 1 cut(s) 491
BpuEI CTTGAG 2 cut(s) 86, 428
Bsa29I ATCGAT 1 cut(s) 30
BsaHI GRCGYC 4 cut(s) 204, 546, 696, 932
BsaJI CCNNGG 1 cut(s) 869
BsaWI WCCGGW 2 cut(s) 955, 1124
BsaXI ACNNNNNCTCC 2 cut(s) 937, 967
Bsc4I CCNNNNNNNGG 1 cut(s) 962
Bse118I RCCGGY 4 cut(s) 70, 79, 928, 962
Bse1I ACTGG 1 cut(s) 1147
BseAI TCCGGA 1 cut(s) 955
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 869
BseGI GGATG 3 cut(s) 416, 861, 1009
BseLI CCNNNNNNNGG 1 cut(s) 962
BseMII CTCAG 1 cut(s) 962
BseNI ACTGG 1 cut(s) 1147
BseRI GAGGAG 4 cut(s) 194, 690, 900, 1070
BseX3I CGGCCG 3 cut(s) 119, 231, 728
BseXI GCAGC 5 cut(s) 161, 326, 339, 515, 1004
BsgI GTGCAG 1 cut(s) 346
Bsh1236I CGCG 6 cut(s) 89, 97, 322, 596, 812, 997
Bsh1285I CGRYCG 5 cut(s) 30, 122, 234, 731, 793
BshFI GGCC 8 cut(s) 86, 121, 164, 233, 524, 730, 896, 962
BshNI GGYRCC 1 cut(s) 931
BshVI ATCGAT 1 cut(s) 30
BsiEI CGRYCG 5 cut(s) 30, 122, 234, 731, 793
BsiSI CCGG 9 cut(s) 71, 80, 331, 642, 929, 956, 963, 1094, 1125
BslFI GGGAC 1 cut(s) 987
BslI CCNNNNNNNGG 1 cut(s) 962
BsmAI GTCTC 2 cut(s) 676, 912
BsmFI GGGAC 1 cut(s) 987
BsnI GGCC 8 cut(s) 86, 121, 164, 233, 524, 730, 896, 962
Bsp13I TCCGGA 1 cut(s) 955
BspANI GGCC 8 cut(s) 86, 121, 164, 233, 524, 730, 896, 962
BspCNI CTCAG 1 cut(s) 961
BspDI ATCGAT 1 cut(s) 30
BspEI TCCGGA 1 cut(s) 955
BspFNI CGCG 6 cut(s) 89, 97, 322, 596, 812, 997
BspLI GGNNCC 3 cut(s) 183, 335, 933
BspMAI CTGCAG 2 cut(s) 151, 554
BspOI GCTAGC 1 cut(s) 491
BspPI GGATC 2 cut(s) 235, 812
BspQI GCTCTTC 2 cut(s) 116, 731
BspT107I GGYRCC 1 cut(s) 931
BsrBI CCGCTC 1 cut(s) 118
BsrFI RCCGGY 4 cut(s) 70, 79, 928, 962
BsrI ACTGG 1 cut(s) 1147
BssAI RCCGGY 4 cut(s) 70, 79, 928, 962
BssECI CCNNGG 1 cut(s) 869
BssNI GRCGYC 4 cut(s) 204, 546, 696, 932
BssSI CACGAG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 40
Bst4CI ACNGT 4 cut(s) 365, 559, 794, 917
Bst6I CTCTTC 2 cut(s) 116, 731
BstACI GRCGYC 4 cut(s) 204, 546, 696, 932
BstC8I GCNNGC 9 cut(s) 214, 433, 437, 489, 526, 533, 550, 930, 964
BstDEI CTNAG 1 cut(s) 948
BstDSI CCRYGG 1 cut(s) 869
BstEII GGTNACC 1 cut(s) 1120
BstF5I GGATG 3 cut(s) 416, 861, 1009
BstFNI CGCG 6 cut(s) 89, 97, 322, 596, 812, 997
BstH2I RGCGCY 2 cut(s) 629, 935
BstHHI GCGC 3 cut(s) 322, 628, 934
BstMAI GTCTC 2 cut(s) 676, 912
BstMCI CGRYCG 5 cut(s) 30, 122, 234, 731, 793
BstNSI RCATGY 1 cut(s) 435
BstPI GGTNACC 1 cut(s) 1120
BstSFI CTRYAG 2 cut(s) 147, 550
BstUI CGCG 6 cut(s) 89, 97, 322, 596, 812, 997
BstV1I GCAGC 5 cut(s) 161, 326, 339, 515, 1004
BstZI CGGCCG 3 cut(s) 119, 231, 728
Bsu15I ATCGAT 1 cut(s) 30
BsuI GTATCC 1 cut(s) 581
BsuRI GGCC 8 cut(s) 86, 121, 164, 233, 524, 730, 896, 962
BsuTUI ATCGAT 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 869
BtgZI GCGATG 1 cut(s) 793
BtrI CACGTC 1 cut(s) 664
BtsCI GGATG 3 cut(s) 416, 861, 1009
Cac8I GCNNGC 9 cut(s) 214, 433, 437, 489, 526, 533, 550, 930, 964
CfoI GCGC 3 cut(s) 322, 628, 934
Cfr10I RCCGGY 4 cut(s) 70, 79, 928, 962
Cfr13I GGNCC 1 cut(s) 271
ClaI ATCGAT 1 cut(s) 30
CseI GACGC 5 cut(s) 193, 457, 554, 585, 602
Csp6I GTAC 3 cut(s) 134, 769, 886
CviAII CATG 2 cut(s) 432, 1159
CviQI GTAC 3 cut(s) 134, 769, 886
DdeI CTNAG 1 cut(s) 948
DinI GGCGCC 1 cut(s) 933
DrdI GACNNNNNNGTC 2 cut(s) 206, 668
DseDI GACNNNNNNGTC 2 cut(s) 206, 668
EaeI YGGCCR 4 cut(s) 84, 119, 231, 728
EagI CGGCCG 3 cut(s) 119, 231, 728
Eam1104I CTCTTC 2 cut(s) 116, 731
EarI CTCTTC 2 cut(s) 116, 731
EciI GGCGGA 4 cut(s) 237, 412, 817, 855
EclXI CGGCCG 3 cut(s) 119, 231, 728
Eco147I AGGCCT 1 cut(s) 524
Eco47I GGWCC 1 cut(s) 271
Eco52I CGGCCG 3 cut(s) 119, 231, 728
Eco57I CTGAAG 1 cut(s) 1121
Eco91I GGTNACC 1 cut(s) 1120
EcoO65I GGTNACC 1 cut(s) 1120
EcoRI GAATTC 1 cut(s) 713
EgeI GGCGCC 1 cut(s) 933
EheI GGCGCC 1 cut(s) 933
FaeI CATG 2 cut(s) 435, 1162
FaiI YATR 3 cut(s) 433, 651, 1160
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 1 cut(s) 987
FatI CATG 2 cut(s) 431, 1158
FauI CCCGC 2 cut(s) 646, 990
FokI GGATG 3 cut(s) 403, 868, 1016
FspBI CTAG 1 cut(s) 488
GlaI GCGC 3 cut(s) 321, 627, 933
HaeII RGCGCY 2 cut(s) 629, 935
HaeIII GGCC 8 cut(s) 86, 121, 164, 233, 524, 730, 896, 962
HapII CCGG 9 cut(s) 71, 80, 331, 642, 929, 956, 963, 1094, 1125
HgaI GACGC 5 cut(s) 193, 457, 554, 585, 602
HhaI GCGC 3 cut(s) 322, 628, 934
Hin1I GRCGYC 4 cut(s) 204, 546, 696, 932
Hin1II CATG 2 cut(s) 435, 1162
Hin6I GCGC 3 cut(s) 320, 626, 932
HinP1I GCGC 3 cut(s) 320, 626, 932
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HindIII AAGCTT 1 cut(s) 838
HinfI GANTC 9 cut(s) 58, 174, 377, 404, 751, 941, 946, 979, 1022
HpaII CCGG 9 cut(s) 71, 80, 331, 642, 929, 956, 963, 1094, 1125
HphI GGTGA 3 cut(s) 1064, 1087, 1132
Hpy166II GTNNAC 2 cut(s) 126, 661
Hpy188III TCNNGA 5 cut(s) 274, 718, 781, 956, 1138
Hpy8I GTNNAC 2 cut(s) 126, 661
HpyAV CCTTC 5 cut(s) 154, 639, 844, 945, 1072
HpyCH4III ACNGT 4 cut(s) 365, 559, 794, 917
HpyCH4IV ACGT 6 cut(s) 132, 411, 657, 663, 696, 861
HpyCH4V TGCA 7 cut(s) 149, 327, 342, 531, 552, 606, 859
HpyF3I CTNAG 1 cut(s) 948
HpySE526I ACGT 6 cut(s) 132, 411, 657, 663, 696, 861
Hsp92I GRCGYC 4 cut(s) 204, 546, 696, 932
Hsp92II CATG 2 cut(s) 435, 1162
HspAI GCGC 3 cut(s) 320, 626, 932
KasI GGCGCC 1 cut(s) 931
Kpn2I TCCGGA 1 cut(s) 955
KroI GCCGGC 2 cut(s) 928, 962
KroNI GCCGGC 2 cut(s) 930, 964
LguI GCTCTTC 2 cut(s) 116, 731
LmnI GCTCC 3 cut(s) 181, 382, 1096
Lsp1109I GCAGC 5 cut(s) 161, 326, 339, 515, 1004
LweI GCATC 2 cut(s) 425, 846
MaeI CTAG 1 cut(s) 488
MaeII ACGT 6 cut(s) 132, 411, 657, 663, 696, 861
MaeIII GTNAC 2 cut(s) 1120, 1138
MbiI CCGCTC 1 cut(s) 118
MboII GAAGA 6 cut(s) 103, 277, 514, 748, 766, 1175
MluCI AATT 2 cut(s) 277, 713
MluI ACGCGT 1 cut(s) 594
Mly113I GGCGCC 1 cut(s) 932
MlyI GAGTC 5 cut(s) 52, 398, 940, 988, 1031
MmeI TCCRAC 4 cut(s) 46, 151, 432, 801
MreI CGCCGGCG 1 cut(s) 928
MroI TCCGGA 1 cut(s) 955
MroNI GCCGGC 2 cut(s) 928, 962
MslI CAYNNNNRTG 1 cut(s) 812
MspA1I CMGCKG 2 cut(s) 152, 339
MspI CCGG 9 cut(s) 71, 80, 331, 642, 929, 956, 963, 1094, 1125
MvnI CGCG 6 cut(s) 89, 97, 322, 596, 812, 997
NaeI GCCGGC 2 cut(s) 930, 964
NarI GGCGCC 1 cut(s) 932
NgoMIV GCCGGC 2 cut(s) 928, 962
NheI GCTAGC 1 cut(s) 487
NlaIII CATG 2 cut(s) 435, 1162
NlaIV GGNNCC 3 cut(s) 183, 335, 933
NmeAIII GCCGAG 2 cut(s) 259, 270
NmuCI GTSAC 2 cut(s) 1120, 1138
NspI RCATGY 1 cut(s) 435
PaeI GCATGC 1 cut(s) 435
PceI AGGCCT 1 cut(s) 524
PciSI GCTCTTC 2 cut(s) 116, 731
PcsI WCGNNNNNNNCGW 1 cut(s) 786
PdiI GCCGGC 2 cut(s) 930, 964
PfeI GAWTC 4 cut(s) 174, 377, 751, 941
PflFI GACNNNGTC 2 cut(s) 203, 978
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 5 cut(s) 52, 398, 940, 987, 1030
PluTI GGCGCC 1 cut(s) 935
PpsI GAGTC 5 cut(s) 52, 398, 940, 987, 1030
PspEI GGTNACC 1 cut(s) 1120
PspN4I GGNNCC 3 cut(s) 183, 335, 933
PspPI GGNCC 1 cut(s) 271
PstI CTGCAG 2 cut(s) 151, 554
PsyI GACNNNGTC 2 cut(s) 203, 978
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 3 cut(s) 135, 770, 887
RsaNI GTAC 3 cut(s) 134, 769, 886
RseI CAYNNNNRTG 1 cut(s) 812
SapI GCTCTTC 2 cut(s) 116, 731
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 5 cut(s) 52, 398, 940, 988, 1031
SfaNI GCATC 2 cut(s) 425, 846
SfcI CTRYAG 2 cut(s) 147, 550
SfoI GGCGCC 1 cut(s) 933
SgrAI CRCCGGYG 1 cut(s) 928
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 812
SmlI CTYRAG 2 cut(s) 101, 443
SmoI CTYRAG 2 cut(s) 101, 443
SphI GCATGC 1 cut(s) 435
Sse9I AATT 2 cut(s) 277, 713
SseBI AGGCCT 1 cut(s) 524
SspDI GGCGCC 1 cut(s) 931
SspMI CTAG 1 cut(s) 488
StuI AGGCCT 1 cut(s) 524
TaaI ACNGT 4 cut(s) 365, 559, 794, 917
TaiI ACGT 6 cut(s) 135, 414, 660, 666, 699, 864
TasI AATT 2 cut(s) 277, 713
TatI WGTACW 1 cut(s) 885
TfiI GAWTC 4 cut(s) 174, 377, 751, 941
TseFI GTSAC 2 cut(s) 1120, 1138
TseI GCWGC 5 cut(s) 149, 327, 339, 528, 1017
Tsp45I GTSAC 2 cut(s) 1120, 1138
TspDTI ATGAA 1 cut(s) 271
TspGWI ACGGA 2 cut(s) 756, 1144
Tth111I GACNNNGTC 2 cut(s) 203, 978
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 2 cut(s) 277, 713
XceI RCATGY 1 cut(s) 435
XspI CTAG 1 cut(s) 488
ZraI GACGTC 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.