AT3G54550

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007688
Physical Location & Seq
Reverse (-)
20193627 .. 20194663
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54550.1

Sequence Viewer

Length: 867 bp
ATGCCTTTCCGTTCCAAAGTCCAGCCTATCAACATCAATGGTGTAGGGATGAGACAAGCGCCGAGATCTCGACTGAAGCGGCTTTTTGAACGTCCGTTCTCTCTGAAGAACTTAGCCGGTGTAGATTCATCGCTTTCTAGAGAAAATTCCGAAGAAATCGAACCGAGCTCGGTCTGTTTGAGGAGGATGGTGCAGAACTATATCGAGGATCCAGACAGTGAGAAACAATCAAAGTGCATTGTTCGTAACCGATGCAACTGCTTCAGTGGAAGTGGTACTGATAGCTCTGACGAGGACGACGAAGAATCTTCTTCTTCTAGAAGAGTTCTTCGAAGCCTCAAGAGTCTTTTACTTTGTGCGAACGTATCTGAGCGTGATCTCGAGACGAAAACAACCGAGATCGTTGAGAGAGAGGTTGAAGATAAGTCCAGACTGAAAAATGTTGTTGATGAACTGGTGGCTTTAGGCTATGATGCAGCAATATGCAAATCTCGCTGGGAGAAATCGAAAACGAAATCGTATTGTGTTCCCGCTGGGGACTATGAGTATTTGGATGTTAACATTGGAGGAGAAAGAGTGCTCATCGACTTTGATTTCCAATCGAAGTTCGAAATTGCTAGATCGAGTGAGACTTACGAGTCGATATCGAAGACATTGCCTTACGTCTTTGTTGGACAAGTTGACAGGTTGACGAAGGTTGTGGTATTTTTGTCTAAAGCCGCAAAGACGAGCTTTAGGAAGAAAGGGCTATTTATGCCACCATGGAGGAGAGCAGAGTATTTGTTAACCAAATGGGTGTCTCAATATGATCGTACTAAGCAAACTCAAGGAGAAACCAGTGGACAAGCTGGTGTTGTCCATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

288

Amino Acids

32.79

Weight (kDa)

8.73

Isoelectric Point (pI)

62.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 62 - 271 2.8e-62 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 637
AciI CCGC 3 cut(s) 79, 531, 720
AclWI GGATC 2 cut(s) 203, 216
AcsI RAATTY 1 cut(s) 145
AcuI CTGAAG 3 cut(s) 95, 125, 247
AfaI GTAC 2 cut(s) 277, 814
AgsI TTSAA 2 cut(s) 89, 419
AluBI AGCT 4 cut(s) 168, 285, 732, 848
AluI AGCT 4 cut(s) 168, 285, 732, 848
Alw21I GWGCWC 2 cut(s) 170, 582
Alw26I GTCTC 4 cut(s) 46, 377, 623, 804
AlwI GGATC 2 cut(s) 203, 216
Ama87I CYCGRG 1 cut(s) 380
ApeKI GCWGC 1 cut(s) 476
ApoI RAATTY 1 cut(s) 145
AspLEI GCGC 1 cut(s) 61
AsuII TTCGAA 2 cut(s) 331, 609
AvaI CYCGRG 1 cut(s) 380
BamHI GGATCC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 656
Bbv12I GWGCWC 2 cut(s) 170, 582
BbvI GCAGC 1 cut(s) 488
BccI CCATC 1 cut(s) 181
BcgI CGANNNNNNTGC 4 cut(s) 240, 274, 637, 671
BcoDI GTCTC 4 cut(s) 46, 377, 623, 804
BfaI CTAG 3 cut(s) 138, 318, 618
BfoI RGCGCY 1 cut(s) 62
BglII AGATCT 1 cut(s) 65
BisI GCNGC 3 cut(s) 80, 477, 720
BlsI GCNGC 3 cut(s) 81, 478, 721
BmeT110I CYCGRG 1 cut(s) 380
BmiI GGNNCC 1 cut(s) 210
BmsI GCATC 2 cut(s) 242, 463
BpiI GAAGAC 1 cut(s) 656
Bpu14I TTCGAA 2 cut(s) 331, 609
BpuEI CTTGAG 2 cut(s) 323, 810
BsaJI CCNNGG 1 cut(s) 761
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 2 cut(s) 459, 837
Bse3DI GCAATG 1 cut(s) 653
BseDI CCNNGG 1 cut(s) 761
BseGI GGATG 4 cut(s) 54, 192, 559, 859
BseMI GCAATG 1 cut(s) 653
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 2 cut(s) 459, 837
BseRI GAGGAG 3 cut(s) 196, 582, 781
BseXI GCAGC 1 cut(s) 488
BseYI CCCAGC 2 cut(s) 495, 533
BsgI GTGCAG 1 cut(s) 212
BsiHKAI GWGCWC 2 cut(s) 170, 582
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 551
BsmAI GTCTC 4 cut(s) 46, 377, 623, 804
BsmBI CGTCTC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 551
BsoBI CYCGRG 1 cut(s) 380
Bsp119I TTCGAA 2 cut(s) 331, 609
Bsp1286I GDGCHC 2 cut(s) 170, 582
Bsp143I GATC 6 cut(s) 65, 208, 376, 399, 620, 808
Bsp19I CCATGG 1 cut(s) 761
BspACI CCGC 3 cut(s) 79, 531, 720
BspCNI CTCAG 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 210
BspPI GGATC 2 cut(s) 203, 216
BspT104I TTCGAA 2 cut(s) 331, 609
BsrDI GCAATG 1 cut(s) 653
BsrFI RCCGGY 1 cut(s) 116
BsrI ACTGG 2 cut(s) 459, 837
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 761
BssMI GATC 6 cut(s) 65, 208, 376, 399, 620, 808
BssT1I CCWWGG 1 cut(s) 761
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 316
BstBI TTCGAA 2 cut(s) 331, 609
BstDEI CTNAG 3 cut(s) 112, 369, 816
BstDSI CCRYGG 1 cut(s) 761
BstF5I GGATG 4 cut(s) 54, 192, 559, 859
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 6 cut(s) 68, 211, 379, 402, 623, 811
BstMAI GTCTC 4 cut(s) 46, 377, 623, 804
BstMBI GATC 6 cut(s) 65, 208, 376, 399, 620, 808
BstMWI GCNNNNNNNGC 2 cut(s) 492, 754
BstV1I GCAGC 1 cut(s) 488
BstV2I GAAGAC 1 cut(s) 656
BstX2I RGATCY 2 cut(s) 65, 208
BstYI RGATCY 2 cut(s) 65, 208
BtgI CCRYGG 1 cut(s) 761
BtgZI GCGATG 1 cut(s) 114
BtsCI GGATG 4 cut(s) 54, 192, 559, 859
BtsIMutI CAGTG 3 cut(s) 223, 271, 844
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 116
Csp6I GTAC 2 cut(s) 276, 813
CviAII CATG 1 cut(s) 762
CviQI GTAC 2 cut(s) 276, 813
DdeI CTNAG 3 cut(s) 112, 369, 816
DpnI GATC 6 cut(s) 67, 210, 378, 401, 622, 810
DpnII GATC 6 cut(s) 65, 208, 376, 399, 620, 808
DrdI GACNNNNNNGTC 1 cut(s) 637
DseDI GACNNNNNNGTC 1 cut(s) 637
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
Ecl136II GAGCTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 761
Eco24I GRGCYC 1 cut(s) 170
Eco32I GATATC 1 cut(s) 645
Eco53kI GAGCTC 1 cut(s) 168
Eco57I CTGAAG 3 cut(s) 95, 125, 247
Eco88I CYCGRG 1 cut(s) 380
EcoICRI GAGCTC 1 cut(s) 168
EcoRV GATATC 1 cut(s) 645
EcoT14I CCWWGG 1 cut(s) 761
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 761
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 1 cut(s) 765
FaiI YATR 7 cut(s) 201, 471, 484, 543, 755, 763, 807
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FaqI GGGAC 1 cut(s) 551
FatI CATG 1 cut(s) 761
FauI CCCGC 1 cut(s) 538
Fnu4HI GCNGC 3 cut(s) 80, 477, 720
FokI GGATG 4 cut(s) 61, 199, 566, 846
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 3 cut(s) 80, 477, 720
FspBI CTAG 3 cut(s) 138, 318, 618
GlaI GCGC 1 cut(s) 60
GluI GCNGC 3 cut(s) 80, 477, 720
GsaI CCCAGC 2 cut(s) 499, 537
HaeII RGCGCY 1 cut(s) 62
HapII CCGG 1 cut(s) 117
HhaI GCGC 1 cut(s) 61
Hin1II CATG 1 cut(s) 765
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HincII GTYRAC 4 cut(s) 559, 682, 690, 786
HindII GTYRAC 4 cut(s) 559, 682, 690, 786
HinfI GANTC 4 cut(s) 125, 305, 343, 638
HpaI GTTAAC 2 cut(s) 559, 786
HpaII CCGG 1 cut(s) 117
Hpy166II GTNNAC 5 cut(s) 559, 682, 690, 786, 842
Hpy188I TCNGA 4 cut(s) 105, 151, 289, 370
Hpy188III TCNNGA 8 cut(s) 69, 138, 212, 318, 340, 380, 382, 429
Hpy8I GTNNAC 5 cut(s) 559, 682, 690, 786, 842
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 688
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 3 cut(s) 91, 363, 663
HpyCH4V TGCA 5 cut(s) 193, 237, 255, 476, 486
HpyF10VI GCNNNNNNNGC 2 cut(s) 492, 754
HpyF3I CTNAG 3 cut(s) 112, 369, 816
HpySE526I ACGT 3 cut(s) 91, 363, 663
Hsp92II CATG 1 cut(s) 765
HspAI GCGC 1 cut(s) 59
KspAI GTTAAC 2 cut(s) 559, 786
Kzo9I GATC 6 cut(s) 65, 208, 376, 399, 620, 808
Lsp1109I GCAGC 1 cut(s) 488
LweI GCATC 2 cut(s) 242, 463
MaeI CTAG 3 cut(s) 138, 318, 618
MaeII ACGT 3 cut(s) 91, 363, 663
MaeIII GTNAC 1 cut(s) 245
MalI GATC 6 cut(s) 67, 210, 378, 401, 622, 810
MboI GATC 6 cut(s) 65, 208, 376, 399, 620, 808
MflI RGATCY 2 cut(s) 65, 208
MhlI GDGCHC 2 cut(s) 170, 582
MluCI AATT 2 cut(s) 145, 612
MlyI GAGTC 2 cut(s) 352, 647
MmeI TCCRAC 1 cut(s) 652
MnlI CCTC 8 cut(s) 174, 177, 199, 286, 347, 406, 560, 759
MseI TTAA 3 cut(s) 558, 785, 865
MspA1I CMGCKG 1 cut(s) 533
MspI CCGG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 492, 754
NcoI CCATGG 1 cut(s) 761
NdeII GATC 6 cut(s) 65, 208, 376, 399, 620, 808
NlaIII CATG 1 cut(s) 765
NlaIV GGNNCC 1 cut(s) 210
NmeAIII GCCGAG 1 cut(s) 87
NspV TTCGAA 2 cut(s) 331, 609
PaeR7I CTCGAG 1 cut(s) 380
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PfeI GAWTC 2 cut(s) 125, 305
PkrI GCNGC 3 cut(s) 81, 478, 721
PleI GAGTC 2 cut(s) 351, 646
PpsI GAGTC 2 cut(s) 351, 646
Psp124BI GAGCTC 1 cut(s) 170
PspFI CCCAGC 2 cut(s) 495, 533
PspN4I GGNNCC 1 cut(s) 210
PsuI RGATCY 2 cut(s) 65, 208
RsaI GTAC 2 cut(s) 277, 814
RsaNI GTAC 2 cut(s) 276, 813
SacI GAGCTC 1 cut(s) 170
SaqAI TTAA 3 cut(s) 558, 785, 865
SatI GCNGC 3 cut(s) 80, 477, 720
Sau3AI GATC 6 cut(s) 65, 208, 376, 399, 620, 808
SchI GAGTC 2 cut(s) 352, 647
SduI GDGCHC 2 cut(s) 170, 582
SfaNI GCATC 2 cut(s) 242, 463
Sfr274I CTCGAG 1 cut(s) 380
SfuI TTCGAA 2 cut(s) 331, 609
SlaI CTCGAG 1 cut(s) 380
SmlI CTYRAG 3 cut(s) 338, 380, 825
SmoI CTYRAG 3 cut(s) 338, 380, 825
Sse9I AATT 2 cut(s) 145, 612
SsiI CCGC 3 cut(s) 79, 531, 720
SspMI CTAG 3 cut(s) 138, 318, 618
SstI GAGCTC 1 cut(s) 170
StyI CCWWGG 1 cut(s) 761
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 3 cut(s) 94, 366, 666
TaqII GACCGA 1 cut(s) 160
TasI AATT 2 cut(s) 145, 612
TauI GCSGC 2 cut(s) 82, 722
TfiI GAWTC 2 cut(s) 125, 305
Tru1I TTAA 3 cut(s) 558, 785, 865
Tru9I TTAA 3 cut(s) 558, 785, 865
TscAI CASTG 3 cut(s) 223, 271, 844
TseI GCWGC 1 cut(s) 476
TspDTI ATGAA 2 cut(s) 117, 465
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 3 cut(s) 223, 271, 844
XapI RAATTY 1 cut(s) 145
XbaI TCTAGA 2 cut(s) 137, 317
XhoI CTCGAG 1 cut(s) 380
XspI CTAG 3 cut(s) 138, 318, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.