RLG00000012277

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007688
Physical Location & Seq
Forward (+)
17062292 .. 17064639
2348 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012277

Sequence Viewer

Length: 1200 bp
ATGAAAATACAGCCGATTGAGTCACACGCGGGGCCTGTGGAAGCGGCGACTAGGTTCGAACCGGTGAAGCTGGTGGCCAAGTCACGGTTCAAGAGGCTCTTCGAGCGACAGTTCACGAACGTATTGAGAACAACGACGCCTGCAGCGGCGGCGGAGGAGAATGAGAAGGAGAAGGTCGTCGTCTGCGGCGTCGAGGAGCTGCATTTCAACAAAGACGGCTTCACGGACTTGGCCGGCAGCGAGTTCGAGCCGAGCTCAGTCTGCTTGGCGAATATGGTGCAGAACTTCATCGAAGAGAGCAACGAGAAGCAATCGTCGGCCAGGTGCAGCCGGAACCGCTGTAACTGCTTCAACGGGAACTGCGACGACAGCTCCGACGACGAATCGGAGCCTTTCGGTTTCGGCGATTCCAATCTGGCTTCATCCGGCGAAGCATGTGAGCTTCTCAAGAGTTTGGTGTCGTGCCCAAGTCTGTGCGAAAGGAATTTGCTAGCGGACACAGCTAGAATCGTCGAGAAAAACAAGATGTGCAAGCGTAAAGACGACAGTAGCAGACTGGTTGTTACTGATAATCTGTTAGCTCTCGGATACGACGCTTCAGTCTGCAAAACTCGTTGGGAAAAATCCCCGTCCTATCCTTCCGGGGAGTATGAGTACATTGACGTGATCGTAAATGGGGAGAGGCTGCTAATCGACGTGGATTTCCGATCGGAGTTTGAGATTGCTCGACCGACGAAGGGCTACAAGGCGATTCTGCAGGCTCTTCCTTATATTTTCGTTGGGAAGCCCGATCGGCTGAGGAGGATCATCGGAATTGTTGAGGAGGCGGCGAAGCAGAGCCTGAAGAAGAAGGGAATGCACATTCCGCCGTGGAGGAAAGCAGAGTACATCAAAGCCAAGTGGCTCTCTCCTCACACCCGCGCCACAGTCTCTGTTAATTCCTCACCGGCTTCCTTGCCCGAAAAGACCGAGACCCAGGCTTTGATCAAGTCCATGGAGTTTGAACAGAGTCGTACCGAGTTGGCAAAGTCGGTGGACTCTTCTGAGCCGGAGGAGTCGGTTTTTCAGTTGTCTGAGGGCGAAGAGGAGAAGGCGATGGTGAAGGAGTGGAAGCCGCCGGAGGTGAAGCCGAGGAGATCATCAGGGGTGAAGATTGTGACTGGTTTGGCTTCAGTCATGGAAGATGAAAATGAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

400

Amino Acids

44.64

Weight (kDa)

5.45

Isoelectric Point (pI)

59.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 91 - 307 8.3e-76 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 599
AccII CGCG 2 cut(s) 29, 921
AclWI GGATC 1 cut(s) 812
AcoI YGGCCR 3 cut(s) 75, 231, 318
AcsI RAATTY 1 cut(s) 484
AcuI CTGAAG 3 cut(s) 582, 863, 1155
AcyI GRCGYC 2 cut(s) 137, 189
AfaI GTAC 3 cut(s) 656, 887, 1015
AfiI CCNNNNNNNGG 2 cut(s) 84, 737
AgeI ACCGGT 1 cut(s) 61
AgsI TTSAA 4 cut(s) 91, 208, 352, 1004
AjiI CACGTC 2 cut(s) 664, 697
AjnI CCWGG 2 cut(s) 320, 975
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 7 cut(s) 70, 199, 255, 372, 442, 503, 581
AluI AGCT 7 cut(s) 70, 199, 255, 372, 442, 503, 581
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 2 cut(s) 934, 965
AlwI GGATC 1 cut(s) 812
AlwNI CAGNNNCTG 2 cut(s) 841, 932
AoxI GGCC 4 cut(s) 32, 75, 231, 318
ApeKI GCWGC 5 cut(s) 143, 199, 237, 327, 685
ApoI RAATTY 1 cut(s) 484
ArsI GACNNNNNNTTYG 2 cut(s) 964, 996
AsiGI ACCGGT 1 cut(s) 61
AspLEI GCGC 1 cut(s) 923
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 643
AsuHPI GGTGA 5 cut(s) 76, 936, 1111, 1135, 1159
AsuII TTCGAA 1 cut(s) 57
AsuNHI GCTAGC 1 cut(s) 490
BaeGI GKGCMC 1 cut(s) 467
BalI TGGCCA 1 cut(s) 77
BanII GRGCYC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 257
BbvCI CCTCAGC 1 cut(s) 797
BbvI GCAGC 5 cut(s) 155, 186, 249, 339, 672
BccI CCATC 1 cut(s) 1090
BceAI ACGGC 2 cut(s) 232, 853
BcgI CGANNNNNNTGC 4 cut(s) 226, 259, 260, 293
BciT130I CCWGG 2 cut(s) 322, 977
BciVI GTATCC 1 cut(s) 581
BclI TGATCA 1 cut(s) 984
BcnI CCSGG 1 cut(s) 643
BcoDI GTCTC 2 cut(s) 934, 965
BfaI CTAG 3 cut(s) 51, 491, 504
BfmI CTRYAG 2 cut(s) 141, 755
BfuI GTATCC 1 cut(s) 581
BglI GCCNNNNNGGC 1 cut(s) 793
Bme1390I CCNGG 3 cut(s) 322, 643, 977
BmgBI CACGTC 2 cut(s) 664, 697
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 3 cut(s) 33, 335, 390
BmrFI CCNGG 3 cut(s) 322, 643, 977
BmtI GCTAGC 1 cut(s) 494
BplI GAGNNNNNCTC 2 cut(s) 239, 271
Bpu10I CCTNAGC 1 cut(s) 797
Bpu14I TTCGAA 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 431
BpuMI CCSGG 1 cut(s) 643
BsaBI GATNNNNATC 1 cut(s) 411
BsaHI GRCGYC 2 cut(s) 137, 189
BsaI GGTCTC 1 cut(s) 965
BsaJI CCNNGG 5 cut(s) 642, 869, 975, 993, 1130
BsaWI WCCGGW 1 cut(s) 61
BsaXI ACNNNNNCTCC 4 cut(s) 356, 386, 638, 668
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 737
Bse118I RCCGGY 3 cut(s) 61, 233, 946
Bse1I ACTGG 2 cut(s) 561, 1165
Bse8I GATNNNNATC 1 cut(s) 411
BseBI CCWGG 2 cut(s) 322, 977
BseDI CCNNGG 5 cut(s) 642, 869, 975, 993, 1130
BseGI GGATG 1 cut(s) 422
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 2 cut(s) 84, 737
BseMII CTCAG 4 cut(s) 270, 788, 1035, 1065
BseNI ACTGG 2 cut(s) 561, 1165
BseRI GAGGAG 8 cut(s) 170, 209, 814, 836, 900, 1067, 1100, 1147
BseSI GKGCMC 1 cut(s) 467
BseXI GCAGC 5 cut(s) 155, 186, 249, 339, 672
BsgI GTGCAG 2 cut(s) 299, 346
Bsh1236I CGCG 2 cut(s) 29, 921
Bsh1285I CGRYCG 3 cut(s) 710, 731, 793
BshFI GGCC 4 cut(s) 34, 77, 233, 320
BshTI ACCGGT 1 cut(s) 61
BsiEI CGRYCG 3 cut(s) 710, 731, 793
BsiHKAI GWGCWC 1 cut(s) 257
BsiSI CCGG 8 cut(s) 62, 234, 331, 426, 642, 947, 1049, 1118
BslI CCNNNNNNNGG 2 cut(s) 84, 737
BsmAI GTCTC 2 cut(s) 934, 965
BsmI GAATGC 1 cut(s) 861
BsnI GGCC 4 cut(s) 34, 77, 233, 320
Bso31I GGTCTC 1 cut(s) 965
Bsp119I TTCGAA 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 257, 467
Bsp143I GATC 6 cut(s) 666, 707, 790, 804, 984, 1136
Bsp19I CCATGG 1 cut(s) 993
BspANI GGCC 4 cut(s) 34, 77, 233, 320
BspCNI CTCAG 4 cut(s) 269, 789, 1036, 1066
BspFNI CGCG 2 cut(s) 29, 921
BspLI GGNNCC 3 cut(s) 33, 335, 390
BspMAI CTGCAG 2 cut(s) 145, 759
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 1 cut(s) 812
BspQI GCTCTTC 2 cut(s) 104, 768
BspT104I TTCGAA 1 cut(s) 57
BspTNI GGTCTC 1 cut(s) 965
BsrFI RCCGGY 3 cut(s) 61, 233, 946
BsrI ACTGG 2 cut(s) 561, 1165
BssAI RCCGGY 3 cut(s) 61, 233, 946
BssECI CCNNGG 5 cut(s) 642, 869, 975, 993, 1130
BssMI GATC 6 cut(s) 666, 707, 790, 804, 984, 1136
BssNI GRCGYC 2 cut(s) 137, 189
BssT1I CCWWGG 1 cut(s) 993
Bst2UI CCWGG 2 cut(s) 322, 977
Bst4CI ACNGT 4 cut(s) 87, 111, 548, 928
Bst6I CTCTTC 5 cut(s) 104, 288, 768, 1045, 1077
BstACI GRCGYC 2 cut(s) 137, 189
BstBI TTCGAA 1 cut(s) 57
BstC8I GCNNGC 5 cut(s) 141, 235, 492, 533, 759
BstDEI CTNAG 4 cut(s) 256, 797, 1044, 1074
BstDSI CCRYGG 2 cut(s) 869, 993
BstF5I GGATG 1 cut(s) 422
BstFNI CGCG 2 cut(s) 29, 921
BstHHI GCGC 1 cut(s) 923
BstKTI GATC 6 cut(s) 669, 710, 793, 807, 987, 1139
BstMAI GTCTC 2 cut(s) 934, 965
BstMBI GATC 6 cut(s) 666, 707, 790, 804, 984, 1136
BstMCI CGRYCG 3 cut(s) 710, 731, 793
BstMWI GCNNNNNNNGC 9 cut(s) 103, 149, 261, 336, 345, 369, 500, 793, 865
BstNI CCWGG 2 cut(s) 322, 977
BstNSI RCATGY 1 cut(s) 438
BstSCI CCNGG 3 cut(s) 320, 641, 975
BstSFI CTRYAG 2 cut(s) 141, 755
BstSLI GKGCMC 1 cut(s) 467
BstUI CGCG 2 cut(s) 29, 921
BstV1I GCAGC 5 cut(s) 155, 186, 249, 339, 672
BsuI GTATCC 1 cut(s) 581
BsuRI GGCC 4 cut(s) 34, 77, 233, 320
BtgI CCRYGG 2 cut(s) 869, 993
BtgZI GCGATG 1 cut(s) 1109
BtrI CACGTC 2 cut(s) 664, 697
BtsCI GGATG 1 cut(s) 422
Cac8I GCNNGC 5 cut(s) 141, 235, 492, 533, 759
CaiI CAGNNNCTG 2 cut(s) 841, 932
CfoI GCGC 1 cut(s) 923
Cfr10I RCCGGY 3 cut(s) 61, 233, 946
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 3 cut(s) 145, 178, 602
Csp6I GTAC 3 cut(s) 655, 886, 1014
CspAI ACCGGT 1 cut(s) 61
CspCI CAANNNNNGTGG 2 cut(s) 1014, 1049
CviAII CATG 4 cut(s) 435, 994, 1177, 1197
CviQI GTAC 3 cut(s) 655, 886, 1014
DdeI CTNAG 4 cut(s) 256, 797, 1044, 1074
DpnI GATC 6 cut(s) 668, 709, 792, 806, 986, 1138
DpnII GATC 6 cut(s) 666, 707, 790, 804, 984, 1136
DrdI GACNNNNNNGTC 1 cut(s) 599
DseDI GACNNNNNNGTC 1 cut(s) 599
EaeI YGGCCR 3 cut(s) 75, 231, 318
Eam1104I CTCTTC 5 cut(s) 104, 288, 768, 1045, 1077
EarI CTCTTC 5 cut(s) 104, 288, 768, 1045, 1077
EciI GGCGGA 2 cut(s) 167, 855
Ecl136II GAGCTC 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 993
Eco24I GRGCYC 1 cut(s) 257
Eco31I GGTCTC 1 cut(s) 965
Eco53kI GAGCTC 1 cut(s) 255
Eco57I CTGAAG 3 cut(s) 582, 863, 1155
EcoICRI GAGCTC 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 32
EcoRII CCWGG 2 cut(s) 320, 975
EcoT14I CCWWGG 1 cut(s) 993
EcoT38I GRGCYC 1 cut(s) 257
ErhI CCWWGG 1 cut(s) 993
FaeI CATG 4 cut(s) 438, 997, 1180, 1200
FaiI YATR 7 cut(s) 275, 436, 651, 771, 995, 1178, 1198
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FatI CATG 4 cut(s) 434, 993, 1176, 1196
FauI CCCGC 2 cut(s) 22, 926
FbaI TGATCA 1 cut(s) 984
FokI GGATG 1 cut(s) 409
FriOI GRGCYC 1 cut(s) 257
FspBI CTAG 3 cut(s) 51, 491, 504
GlaI GCGC 1 cut(s) 922
HaeIII GGCC 4 cut(s) 34, 77, 233, 320
HapII CCGG 8 cut(s) 62, 234, 331, 426, 642, 947, 1049, 1118
HgaI GACGC 3 cut(s) 145, 178, 602
HhaI GCGC 1 cut(s) 923
Hin1I GRCGYC 2 cut(s) 137, 189
Hin1II CATG 4 cut(s) 438, 997, 1180, 1200
Hin6I GCGC 1 cut(s) 921
HinP1I GCGC 1 cut(s) 921
HinfI GANTC 8 cut(s) 20, 383, 407, 507, 751, 1009, 1037, 1055
HpaII CCGG 8 cut(s) 62, 234, 331, 426, 642, 947, 1049, 1118
HphI GGTGA 5 cut(s) 76, 936, 1111, 1135, 1159
Hpy166II GTNNAC 2 cut(s) 114, 1036
Hpy188I TCNGA 8 cut(s) 376, 388, 587, 707, 712, 812, 1045, 1075
Hpy188III TCNNGA 4 cut(s) 91, 115, 448, 514
Hpy8I GTNNAC 2 cut(s) 114, 1036
HpyAV CCTTC 7 cut(s) 160, 166, 648, 730, 844, 1084, 1096
HpyCH4III ACNGT 4 cut(s) 87, 111, 548, 928
HpyCH4IV ACGT 3 cut(s) 120, 663, 696
HpyCH4V TGCA 8 cut(s) 143, 202, 280, 327, 531, 606, 757, 859
HpyF10VI GCNNNNNNNGC 9 cut(s) 103, 149, 261, 336, 345, 369, 500, 793, 865
HpyF3I CTNAG 4 cut(s) 256, 797, 1044, 1074
HpySE526I ACGT 3 cut(s) 120, 663, 696
Hsp92I GRCGYC 2 cut(s) 137, 189
Hsp92II CATG 4 cut(s) 438, 997, 1180, 1200
HspAI GCGC 1 cut(s) 921
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 984
Kzo9I GATC 6 cut(s) 666, 707, 790, 804, 984, 1136
LguI GCTCTTC 2 cut(s) 104, 768
LmnI GCTCC 3 cut(s) 196, 377, 388
Lsp1109I GCAGC 5 cut(s) 155, 186, 249, 339, 672
MaeI CTAG 3 cut(s) 51, 491, 504
MaeII ACGT 3 cut(s) 120, 663, 696
MaeIII GTNAC 5 cut(s) 21, 81, 341, 562, 1156
MalI GATC 6 cut(s) 668, 709, 792, 806, 986, 1138
MboI GATC 6 cut(s) 666, 707, 790, 804, 984, 1136
MboII GAAGA 9 cut(s) 91, 305, 755, 856, 859, 1032, 1094, 1162, 1193
MhlI GDGCHC 2 cut(s) 257, 467
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 3 cut(s) 484, 813, 937
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 4 cut(s) 29, 1018, 1031, 1064
MmeI TCCRAC 1 cut(s) 399
Mox20I TGGCCA 1 cut(s) 77
MroNI GCCGGC 1 cut(s) 233
MscI TGGCCA 1 cut(s) 77
MseI TTAA 1 cut(s) 936
MslI CAYNNNNRTG 1 cut(s) 662
Msp20I TGGCCA 1 cut(s) 77
MspA1I CMGCKG 2 cut(s) 146, 339
MspI CCGG 8 cut(s) 62, 234, 331, 426, 642, 947, 1049, 1118
MspR9I CCNGG 3 cut(s) 322, 643, 977
Mva1269I GAATGC 1 cut(s) 861
MvaI CCWGG 2 cut(s) 322, 977
MvnI CGCG 2 cut(s) 29, 921
MwoI GCNNNNNNNGC 9 cut(s) 103, 149, 261, 336, 345, 369, 500, 793, 865
NaeI GCCGGC 1 cut(s) 235
NciI CCSGG 1 cut(s) 643
NcoI CCATGG 1 cut(s) 993
NdeII GATC 6 cut(s) 666, 707, 790, 804, 984, 1136
NgoMIV GCCGGC 1 cut(s) 233
NheI GCTAGC 1 cut(s) 490
NlaIII CATG 4 cut(s) 438, 997, 1180, 1200
NlaIV GGNNCC 3 cut(s) 33, 335, 390
NmeAIII GCCGAG 2 cut(s) 276, 1155
NmuCI GTSAC 3 cut(s) 21, 81, 1156
NspI RCATGY 1 cut(s) 438
NspV TTCGAA 1 cut(s) 57
PciSI GCTCTTC 2 cut(s) 104, 768
PcsI WCGNNNNNNNCGW 4 cut(s) 186, 360, 372, 402
PctI GAATGC 1 cut(s) 861
PdiI GCCGGC 1 cut(s) 235
PfeI GAWTC 4 cut(s) 383, 407, 507, 751
PinAI ACCGGT 1 cut(s) 61
Ple19I CGATCG 2 cut(s) 710, 793
PleI GAGTC 4 cut(s) 28, 1017, 1031, 1063
PpsI GAGTC 4 cut(s) 28, 1017, 1031, 1063
Psp124BI GAGCTC 1 cut(s) 257
Psp6I CCWGG 2 cut(s) 320, 975
PspGI CCWGG 2 cut(s) 320, 975
PspN4I GGNNCC 3 cut(s) 33, 335, 390
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 2 cut(s) 145, 759
PstNI CAGNNNCTG 2 cut(s) 841, 932
PvuI CGATCG 2 cut(s) 710, 793
RsaI GTAC 3 cut(s) 656, 887, 1015
RsaNI GTAC 3 cut(s) 655, 886, 1014
RseI CAYNNNNRTG 1 cut(s) 662
SacI GAGCTC 1 cut(s) 257
SapI GCTCTTC 2 cut(s) 104, 768
SaqAI TTAA 1 cut(s) 936
Sau3AI GATC 6 cut(s) 666, 707, 790, 804, 984, 1136
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 4 cut(s) 29, 1018, 1031, 1064
ScrFI CCNGG 3 cut(s) 322, 643, 977
SduI GDGCHC 2 cut(s) 257, 467
SfcI CTRYAG 2 cut(s) 141, 755
SfuI TTCGAA 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 3 cut(s) 484, 813, 937
SspMI CTAG 3 cut(s) 51, 491, 504
SstI GAGCTC 1 cut(s) 257
StyD4I CCNGG 3 cut(s) 320, 641, 975
StyI CCWWGG 1 cut(s) 993
TaaI ACNGT 4 cut(s) 87, 111, 548, 928
TaiI ACGT 3 cut(s) 123, 666, 699
TaqI TCGA 8 cut(s) 57, 102, 192, 246, 291, 513, 693, 727
TaqII GACCGA 2 cut(s) 745, 983
TasI AATT 3 cut(s) 484, 813, 937
TatI WGTACW 2 cut(s) 654, 885
TauI GCSGC 6 cut(s) 47, 149, 152, 189, 830, 1117
TfiI GAWTC 4 cut(s) 383, 407, 507, 751
Tru1I TTAA 1 cut(s) 936
Tru9I TTAA 1 cut(s) 936
TseFI GTSAC 3 cut(s) 21, 81, 1156
TseI GCWGC 5 cut(s) 143, 199, 237, 327, 685
Tsp45I GTSAC 3 cut(s) 21, 81, 1156
TspDTI ATGAA 4 cut(s) 17, 277, 411, 1200
TspGWI ACGGA 1 cut(s) 239
XapI RAATTY 1 cut(s) 484
XceI RCATGY 1 cut(s) 438
XspI CTAG 3 cut(s) 51, 491, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.