Rw6G027370

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0007688
Physical Location & Seq
Reverse (-)
51128870 .. 51130267
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G027370.1

Sequence Viewer

Length: 1185 bp
ATGAAAATACAGCCGATTGAGTCACACGCGGGGCCTGTGGAAGCGGAGACTAGGTTCGAACCGGTGAAGCCGGTGGCCAAGTCACGGTTCAAGAGGCTCTTCGAGCGACAGTTCACGAGCGTATTGAGAACAACGACGCCTGCAGCGGCGGAGGAGAAGGTCGTCGTCTGCGGCGTCGAGGAGCTGCATTTGAACAAAGACGGCTTCACGGACTTGGCAGGCGGCGAGTTCGAGCCGAGCTCAGTCTGCTTGGCGAATATGGTGCAGAACTTCATCGAAGAGAGCAACGAGAAGCAATCGTCGGCCAGGTGCAGCCGGAACCGCTGTAACTGCTTCAACGGAAACTGCGACGACAGCTCCGACGACGAATCGGAGCCTTTCGGTTTCGGCGATTCCAATCTGGCTTCATCCGGCGAAGCATGTGAGCTTCTCAAGAGTTTGGTGTCGTGCCCGAGTCTATGCGAAAGGAATTTGCTAGCGGACACAGCTAGAATCGTCGAGAAAAACAAGATGTGCAAGCGTAAAGACGACAATGGCAGACTGGTTGTTACTGATAATCTGTTAGCTCTCGGATACGACGCTTCAGTCTGCAAAACTCGTTGGGAAAAATCCCCTTCCTATCCTTCCGGGGAGTACGAGTACATTGACGTGATCGTAAATGGGGAGAGGCTGCTAATCGACGTGGATTTCCGATCGGAGTTTGAGATTGCTCGACCGACGAAGAGCTACAAGGCGATTTTGCAGGCTCTTCCTTATATTTTCGTTGGGAAGCCCGATCGGCTGAGGAGGATCATCGGAATTGTTTCGGAGGCGGCGAAGCAGAGCCTGAAGAAGAAGGGAATGCACATTCCTCCGTGGAGGAAAGCAGAGTACATCAAAGCCAAGTGGCTCTCTCCTCACACCCGCGCCATAGTCTCTGTTAATTCCTCACCGGATTCCTTGCCCGAAAAGACCAAGACCCAGTCTTTGATCAAGTCCATGGAGTTTGAACAGAGTCGTACCGAGTTGGCAAAGTCGGTGGACTCTTCTGAGCCGGAGGAGTCGGTTTTTGAGTTTTCTGAGGGCGAAGAGGAGAAGGCGGTGGTGAAGGAGTGGAAGCCGCCGGAGGTGAAGCCCAGGAGATCATCAGGGGTGAAGATTGTGACTGGTTTGGCTTCAGTCATGGAAGATGAAAATGAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

394

Amino Acids

44.07

Weight (kDa)

5.53

Isoelectric Point (pI)

59.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 86 - 302 2.2e-76 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 584
AccII CGCG 2 cut(s) 29, 906
AclWI GGATC 1 cut(s) 797
AcoI YGGCCR 2 cut(s) 75, 303
AcsI RAATTY 1 cut(s) 469
AcuI CTGAAG 3 cut(s) 567, 848, 1140
AcyI GRCGYC 2 cut(s) 137, 174
AfaI GTAC 4 cut(s) 635, 641, 872, 1000
AfiI CCNNNNNNNGG 1 cut(s) 84
AgeI ACCGGT 1 cut(s) 61
AgsI TTSAA 4 cut(s) 91, 193, 337, 989
AjiI CACGTC 2 cut(s) 649, 682
AjnI CCWGG 2 cut(s) 305, 1115
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AloI GAACNNNNNNTCC 2 cut(s) 38, 70
AluBI AGCT 7 cut(s) 184, 240, 357, 427, 488, 566, 726
AluI AGCT 7 cut(s) 184, 240, 357, 427, 488, 566, 726
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 2 cut(s) 41, 919
AlwI GGATC 1 cut(s) 797
AlwNI CAGNNNCTG 1 cut(s) 826
Ama87I CYCGRG 1 cut(s) 451
AoxI GGCC 3 cut(s) 32, 75, 303
ApeKI GCWGC 4 cut(s) 143, 184, 312, 670
ApoI RAATTY 1 cut(s) 469
ArsI GACNNNNNNTTYG 2 cut(s) 949, 981
AsiGI ACCGGT 1 cut(s) 61
Asp700I GAANNNNTTC 1 cut(s) 802
AspLEI GCGC 1 cut(s) 908
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 628
AsuHPI GGTGA 5 cut(s) 76, 921, 1096, 1120, 1144
AsuII TTCGAA 1 cut(s) 57
AsuNHI GCTAGC 1 cut(s) 475
AvaI CYCGRG 1 cut(s) 451
BaeGI GKGCMC 1 cut(s) 452
BalI TGGCCA 1 cut(s) 77
BanII GRGCYC 1 cut(s) 242
BauI CACGAG 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 242
BbvCI CCTCAGC 1 cut(s) 782
BbvI GCAGC 4 cut(s) 155, 171, 324, 657
BceAI ACGGC 1 cut(s) 217
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 2 cut(s) 307, 1117
BciVI GTATCC 1 cut(s) 566
BclI TGATCA 1 cut(s) 969
BcnI CCSGG 1 cut(s) 628
BcoDI GTCTC 2 cut(s) 41, 919
BfaI CTAG 3 cut(s) 51, 476, 489
BfmI CTRYAG 1 cut(s) 141
BfuI GTATCC 1 cut(s) 566
BglI GCCNNNNNGGC 1 cut(s) 778
BisI GCNGC 9 cut(s) 144, 147, 172, 185, 223, 313, 671, 813, 1100
BlsI GCNGC 9 cut(s) 145, 148, 173, 186, 224, 314, 672, 814, 1101
Bme1390I CCNGG 3 cut(s) 307, 628, 1117
BmeT110I CYCGRG 1 cut(s) 451
BmgBI CACGTC 2 cut(s) 649, 682
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 3 cut(s) 33, 320, 375
BmrFI CCNGG 3 cut(s) 307, 628, 1117
BmrI ACTGGG 1 cut(s) 955
BmtI GCTAGC 1 cut(s) 479
BmuI ACTGGG 1 cut(s) 955
BplI GAGNNNNNCTC 2 cut(s) 224, 256
Bpu10I CCTNAGC 1 cut(s) 782
Bpu14I TTCGAA 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 1 cut(s) 628
BsaBI GATNNNNATC 1 cut(s) 396
BsaHI GRCGYC 2 cut(s) 137, 174
BsaJI CCNNGG 4 cut(s) 627, 854, 978, 1115
BsaWI WCCGGW 2 cut(s) 61, 931
BsaXI ACNNNNNCTCC 6 cut(s) 38, 68, 341, 371, 623, 653
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse118I RCCGGY 2 cut(s) 61, 70
Bse1I ACTGG 3 cut(s) 546, 961, 1150
Bse8I GATNNNNATC 1 cut(s) 396
BseBI CCWGG 2 cut(s) 307, 1117
BseDI CCNNGG 4 cut(s) 627, 854, 978, 1115
BseGI GGATG 1 cut(s) 407
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMII CTCAG 4 cut(s) 255, 773, 1020, 1050
BseNI ACTGG 3 cut(s) 546, 961, 1150
BseRI GAGGAG 6 cut(s) 167, 194, 799, 885, 1052, 1085
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 4 cut(s) 155, 171, 324, 657
BsgI GTGCAG 2 cut(s) 284, 331
Bsh1236I CGCG 2 cut(s) 29, 906
Bsh1285I CGRYCG 3 cut(s) 695, 716, 778
BshFI GGCC 3 cut(s) 34, 77, 305
BshTI ACCGGT 1 cut(s) 61
BsiEI CGRYCG 3 cut(s) 695, 716, 778
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 451
BsiSI CCGG 8 cut(s) 62, 71, 316, 411, 627, 932, 1034, 1103
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 2 cut(s) 41, 919
BsmI GAATGC 1 cut(s) 846
BsnI GGCC 3 cut(s) 34, 77, 305
BsoBI CYCGRG 1 cut(s) 451
Bsp119I TTCGAA 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 242, 452
Bsp143I GATC 6 cut(s) 651, 692, 775, 789, 969, 1121
Bsp19I CCATGG 1 cut(s) 978
BspANI GGCC 3 cut(s) 34, 77, 305
BspCNI CTCAG 4 cut(s) 254, 774, 1021, 1051
BspFNI CGCG 2 cut(s) 29, 906
BspLI GGNNCC 3 cut(s) 33, 320, 375
BspMAI CTGCAG 1 cut(s) 145
BspOI GCTAGC 1 cut(s) 479
BspPI GGATC 1 cut(s) 797
BspQI GCTCTTC 3 cut(s) 104, 716, 753
BspT104I TTCGAA 1 cut(s) 57
BsrFI RCCGGY 2 cut(s) 61, 70
BsrI ACTGG 3 cut(s) 546, 961, 1150
BssAI RCCGGY 2 cut(s) 61, 70
BssECI CCNNGG 4 cut(s) 627, 854, 978, 1115
BssMI GATC 6 cut(s) 651, 692, 775, 789, 969, 1121
BssNI GRCGYC 2 cut(s) 137, 174
BssSI CACGAG 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 978
Bst2BI CACGAG 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 307, 1117
Bst4CI ACNGT 2 cut(s) 87, 111
Bst6I CTCTTC 6 cut(s) 104, 273, 716, 753, 1030, 1062
BstACI GRCGYC 2 cut(s) 137, 174
BstBI TTCGAA 1 cut(s) 57
BstC8I GCNNGC 5 cut(s) 141, 220, 477, 518, 744
BstDEI CTNAG 4 cut(s) 241, 782, 1029, 1059
BstDSI CCRYGG 2 cut(s) 854, 978
BstF5I GGATG 1 cut(s) 407
BstFNI CGCG 2 cut(s) 29, 906
BstHHI GCGC 1 cut(s) 908
BstKTI GATC 6 cut(s) 654, 695, 778, 792, 972, 1124
BstMAI GTCTC 2 cut(s) 41, 919
BstMBI GATC 6 cut(s) 651, 692, 775, 789, 969, 1121
BstMCI CGRYCG 3 cut(s) 695, 716, 778
BstMWI GCNNNNNNNGC 7 cut(s) 103, 246, 321, 330, 354, 485, 778
BstNI CCWGG 2 cut(s) 307, 1117
BstNSI RCATGY 1 cut(s) 423
BstSCI CCNGG 3 cut(s) 305, 626, 1115
BstSFI CTRYAG 1 cut(s) 141
BstSLI GKGCMC 1 cut(s) 452
BstUI CGCG 2 cut(s) 29, 906
BstV1I GCAGC 4 cut(s) 155, 171, 324, 657
BsuI GTATCC 1 cut(s) 566
BsuRI GGCC 3 cut(s) 34, 77, 305
BtgI CCRYGG 2 cut(s) 854, 978
BtrI CACGTC 2 cut(s) 649, 682
BtsCI GGATG 1 cut(s) 407
Cac8I GCNNGC 5 cut(s) 141, 220, 477, 518, 744
CaiI CAGNNNCTG 1 cut(s) 826
CfoI GCGC 1 cut(s) 908
Cfr10I RCCGGY 2 cut(s) 61, 70
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 3 cut(s) 145, 163, 587
Csp6I GTAC 4 cut(s) 634, 640, 871, 999
CspAI ACCGGT 1 cut(s) 61
CspCI CAANNNNNGTGG 2 cut(s) 999, 1034
CviAII CATG 4 cut(s) 420, 979, 1162, 1182
CviQI GTAC 4 cut(s) 634, 640, 871, 999
DdeI CTNAG 4 cut(s) 241, 782, 1029, 1059
DpnI GATC 6 cut(s) 653, 694, 777, 791, 971, 1123
DpnII GATC 6 cut(s) 651, 692, 775, 789, 969, 1121
DrdI GACNNNNNNGTC 1 cut(s) 584
DseDI GACNNNNNNGTC 1 cut(s) 584
EaeI YGGCCR 2 cut(s) 75, 303
Eam1104I CTCTTC 6 cut(s) 104, 273, 716, 753, 1030, 1062
EarI CTCTTC 6 cut(s) 104, 273, 716, 753, 1030, 1062
EciI GGCGGA 1 cut(s) 164
Ecl136II GAGCTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 978
Eco24I GRGCYC 1 cut(s) 242
Eco53kI GAGCTC 1 cut(s) 240
Eco57I CTGAAG 3 cut(s) 567, 848, 1140
Eco88I CYCGRG 1 cut(s) 451
EcoICRI GAGCTC 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 32
EcoRII CCWGG 2 cut(s) 305, 1115
EcoT14I CCWWGG 1 cut(s) 978
EcoT38I GRGCYC 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 978
FaeI CATG 4 cut(s) 423, 982, 1165, 1185
FaiI YATR 8 cut(s) 260, 421, 460, 756, 911, 980, 1163, 1183
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FatI CATG 4 cut(s) 419, 978, 1161, 1181
FauI CCCGC 2 cut(s) 22, 911
FbaI TGATCA 1 cut(s) 969
Fnu4HI GCNGC 9 cut(s) 144, 147, 172, 185, 223, 313, 671, 813, 1100
FokI GGATG 1 cut(s) 394
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 9 cut(s) 144, 147, 172, 185, 223, 313, 671, 813, 1100
FspBI CTAG 3 cut(s) 51, 476, 489
GlaI GCGC 1 cut(s) 907
GluI GCNGC 9 cut(s) 144, 147, 172, 185, 223, 313, 671, 813, 1100
HaeIII GGCC 3 cut(s) 34, 77, 305
HapII CCGG 8 cut(s) 62, 71, 316, 411, 627, 932, 1034, 1103
HgaI GACGC 3 cut(s) 145, 163, 587
HhaI GCGC 1 cut(s) 908
Hin1I GRCGYC 2 cut(s) 137, 174
Hin1II CATG 4 cut(s) 423, 982, 1165, 1185
Hin6I GCGC 1 cut(s) 906
HinP1I GCGC 1 cut(s) 906
HinfI GANTC 9 cut(s) 20, 368, 392, 454, 492, 935, 994, 1022, 1040
HpaII CCGG 8 cut(s) 62, 71, 316, 411, 627, 932, 1034, 1103
HphI GGTGA 5 cut(s) 76, 921, 1096, 1120, 1144
Hpy166II GTNNAC 2 cut(s) 114, 1021
Hpy188I TCNGA 9 cut(s) 361, 373, 572, 692, 697, 797, 808, 1030, 1060
Hpy188III TCNNGA 4 cut(s) 91, 115, 433, 499
Hpy8I GTNNAC 2 cut(s) 114, 1021
HpyAV CCTTC 6 cut(s) 151, 624, 633, 829, 1069, 1081
HpyCH4III ACNGT 2 cut(s) 87, 111
HpyCH4IV ACGT 2 cut(s) 648, 681
HpyCH4V TGCA 8 cut(s) 143, 187, 265, 312, 516, 591, 742, 844
HpyF10VI GCNNNNNNNGC 7 cut(s) 103, 246, 321, 330, 354, 485, 778
HpyF3I CTNAG 4 cut(s) 241, 782, 1029, 1059
HpySE526I ACGT 2 cut(s) 648, 681
Hsp92I GRCGYC 2 cut(s) 137, 174
Hsp92II CATG 4 cut(s) 423, 982, 1165, 1185
HspAI GCGC 1 cut(s) 906
Ksp22I TGATCA 1 cut(s) 969
Kzo9I GATC 6 cut(s) 651, 692, 775, 789, 969, 1121
LguI GCTCTTC 3 cut(s) 104, 716, 753
LmnI GCTCC 3 cut(s) 181, 362, 373
Lsp1109I GCAGC 4 cut(s) 155, 171, 324, 657
MaeI CTAG 3 cut(s) 51, 476, 489
MaeII ACGT 2 cut(s) 648, 681
MaeIII GTNAC 5 cut(s) 21, 81, 326, 547, 1141
MalI GATC 6 cut(s) 653, 694, 777, 791, 971, 1123
MboI GATC 6 cut(s) 651, 692, 775, 789, 969, 1121
MhlI GDGCHC 2 cut(s) 242, 452
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 3 cut(s) 469, 798, 922
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 5 cut(s) 29, 463, 1003, 1016, 1049
MmeI TCCRAC 1 cut(s) 384
Mox20I TGGCCA 1 cut(s) 77
MroXI GAANNNNTTC 1 cut(s) 802
MscI TGGCCA 1 cut(s) 77
MseI TTAA 1 cut(s) 921
MslI CAYNNNNRTG 1 cut(s) 647
Msp20I TGGCCA 1 cut(s) 77
MspA1I CMGCKG 2 cut(s) 146, 324
MspI CCGG 8 cut(s) 62, 71, 316, 411, 627, 932, 1034, 1103
MspR9I CCNGG 3 cut(s) 307, 628, 1117
Mva1269I GAATGC 1 cut(s) 846
MvaI CCWGG 2 cut(s) 307, 1117
MvnI CGCG 2 cut(s) 29, 906
MwoI GCNNNNNNNGC 7 cut(s) 103, 246, 321, 330, 354, 485, 778
NciI CCSGG 1 cut(s) 628
NcoI CCATGG 1 cut(s) 978
NdeII GATC 6 cut(s) 651, 692, 775, 789, 969, 1121
NheI GCTAGC 1 cut(s) 475
NlaIII CATG 4 cut(s) 423, 982, 1165, 1185
NlaIV GGNNCC 3 cut(s) 33, 320, 375
NmeAIII GCCGAG 1 cut(s) 261
NmuCI GTSAC 3 cut(s) 21, 81, 1141
NspI RCATGY 1 cut(s) 423
NspV TTCGAA 1 cut(s) 57
PciSI GCTCTTC 3 cut(s) 104, 716, 753
PcsI WCGNNNNNNNCGW 5 cut(s) 171, 345, 357, 387, 812
PctI GAATGC 1 cut(s) 846
PdmI GAANNNNTTC 1 cut(s) 802
PfeI GAWTC 4 cut(s) 368, 392, 492, 935
PflFI GACNNNGTC 1 cut(s) 961
PinAI ACCGGT 1 cut(s) 61
PkrI GCNGC 9 cut(s) 145, 148, 173, 186, 224, 314, 672, 814, 1101
Ple19I CGATCG 2 cut(s) 695, 778
PleI GAGTC 5 cut(s) 28, 462, 1002, 1016, 1048
PpsI GAGTC 5 cut(s) 28, 462, 1002, 1016, 1048
Psp124BI GAGCTC 1 cut(s) 242
Psp6I CCWGG 2 cut(s) 305, 1115
PspGI CCWGG 2 cut(s) 305, 1115
PspN4I GGNNCC 3 cut(s) 33, 320, 375
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 826
PsyI GACNNNGTC 1 cut(s) 961
PvuI CGATCG 2 cut(s) 695, 778
RsaI GTAC 4 cut(s) 635, 641, 872, 1000
RsaNI GTAC 4 cut(s) 634, 640, 871, 999
RseI CAYNNNNRTG 1 cut(s) 647
SacI GAGCTC 1 cut(s) 242
SapI GCTCTTC 3 cut(s) 104, 716, 753
SaqAI TTAA 1 cut(s) 921
SatI GCNGC 9 cut(s) 144, 147, 172, 185, 223, 313, 671, 813, 1100
Sau3AI GATC 6 cut(s) 651, 692, 775, 789, 969, 1121
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 5 cut(s) 29, 463, 1003, 1016, 1049
ScrFI CCNGG 3 cut(s) 307, 628, 1117
SduI GDGCHC 2 cut(s) 242, 452
SfcI CTRYAG 1 cut(s) 141
SfuI TTCGAA 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 647
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 3 cut(s) 469, 798, 922
SspMI CTAG 3 cut(s) 51, 476, 489
SstI GAGCTC 1 cut(s) 242
StyD4I CCNGG 3 cut(s) 305, 626, 1115
StyI CCWWGG 1 cut(s) 978
TaaI ACNGT 2 cut(s) 87, 111
TaiI ACGT 2 cut(s) 651, 684
TaqI TCGA 8 cut(s) 57, 102, 177, 231, 276, 498, 678, 712
TaqII GACCGA 1 cut(s) 730
TasI AATT 3 cut(s) 469, 798, 922
TatI WGTACW 2 cut(s) 639, 870
TauI GCSGC 5 cut(s) 149, 174, 225, 815, 1102
TfiI GAWTC 4 cut(s) 368, 392, 492, 935
Tru1I TTAA 1 cut(s) 921
Tru9I TTAA 1 cut(s) 921
TseFI GTSAC 3 cut(s) 21, 81, 1141
TseI GCWGC 4 cut(s) 143, 184, 312, 670
Tsp45I GTSAC 3 cut(s) 21, 81, 1141
TspDTI ATGAA 4 cut(s) 17, 262, 396, 1185
TspGWI ACGGA 3 cut(s) 224, 354, 843
Tth111I GACNNNGTC 1 cut(s) 961
XapI RAATTY 1 cut(s) 469
XceI RCATGY 1 cut(s) 423
XmnI GAANNNNTTC 1 cut(s) 802
XspI CTAG 3 cut(s) 51, 476, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.