pycom11g24480

PDDEXK-like family of unknown function

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
27397672 .. 27399036
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g24480.2

Sequence Viewer

Length: 1173 bp
ATGCCTTTTCCAATGAAAATCCAACCGATCGATTTTCGCACGAGTCCTGAAGACCTGACTCTGTTCGAGCCGGTCAAGCCGGTGGCGGCGAAGTCGCGGCTCAAGCGGCTGTTCGAGCGGCCGTTCACGAACGTATTGAAAAGCTCAGCGGCGACGGAGAAGACCAGCGGAGGAATCGGAATGGAAGAGCTGCATTTCAACAAAGACGGAGGCGGCGGAGGATCGGCCGAGTTCGAGCCGAGCTCCATGTGCTTGACGAAGATGGTTCAGAATTTCATCGAGGAGAGCAACGAGAAGCAATCATCGACTGCGGCGCGGTGCAGCCGGAACCGCTGCAACTGCTTCAACGGAAACGACAGTTCGGAAGACGAATCGGAGCTGTTTGGCGGTTTCGGCGACTCCAACGTGGCGTCCTCTGCCGAATCATGTGAGCTTCTCAAGGGTTTGGTTTCGTGCCAGAGCGTGAGCGAGAGGAACCTGCTAGCCGACACAGCGAAGATTGTTGAGAGAAACAAGGCCTGCTGCAAGCGGAAAGACGACACCTGCAGAACCGTCGTTTCTGATAGTCTGTTAGCTCTCGGATACGACGCGTCGGTCTGCAAATCTCGTTGGGAAAAAGCTCCGTCCTATCCCGCCGGAGAATATGATTACATTGACGTGATCGTCAAAGGAGAGAGACTGCTGATCGACGTCGATTTCAGATCGGAATTCGAGATCGCACGGCCGACGAAGAGCTACAAGGCGACTCTCCAGACGCTTCCGTACATTTTCGTCGGGAAGCACGACCGGCTGTGGGGGATCATCGCGGTGGTGTCGGAGGCGGCGAAGCAGAGCTTGAAGAAGAAAGGGATGCCAGTTCCACCGTGGAGAAAAGCCGAGTACATCAGGGCCAAGTGGCTGTCTCCTCACACTAGAGCCACACCGGCGCCGACCGATTCGACTCAGCCACTGATCGGGTCAGGCGACTCGGGACTGAGTCTGGGCGGGACAAGCTCGGTTGAGGATGGTGAGTTGGGCGACGAGTCGGTGTTTGAGTTGTCGGCGAGTTCCGGTGAGGAAGAGAAGGCGATGGCGGCGGCGAAGGAGTGGAAGCCGCCGGAGCTGAAGCCGAAGAGATCGAGCGGTGACCGGAGTAAAAATCGTGACCGGTTTGGCTTCTGTCATGAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

391

Amino Acids

42.83

Weight (kDa)

6.23

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 551
AasI GACNNNNNNGTC 2 cut(s) 593, 662
AatII GACGTC 1 cut(s) 693
Acc36I ACCTGC 2 cut(s) 486, 551
AccB1I GGYRCC 1 cut(s) 925
AccBSI CCGCTC 2 cut(s) 118, 1122
AccII CGCG 4 cut(s) 97, 316, 590, 806
AclWI GGATC 2 cut(s) 229, 806
AcoI YGGCCR 3 cut(s) 119, 225, 722
AcsI RAATTY 2 cut(s) 271, 707
AcuI CTGAAG 2 cut(s) 69, 1124
AcyI GRCGYC 3 cut(s) 410, 690, 926
AfaI GTAC 2 cut(s) 764, 881
AfiI CCNNNNNNNGG 2 cut(s) 793, 953
AflIII ACRYGT 1 cut(s) 588
AgeI ACCGGT 1 cut(s) 1146
AgsI TTSAA 4 cut(s) 139, 199, 346, 838
AjiI CACGTC 1 cut(s) 658
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 2 cut(s) 670, 906
AlwI GGATC 2 cut(s) 229, 806
AlwNI CAGNNNCTG 1 cut(s) 949
Ama87I CYCGRG 1 cut(s) 967
AoxI GGCC 5 cut(s) 119, 225, 516, 722, 888
ApeKI GCWGC 4 cut(s) 190, 321, 333, 522
ApoI RAATTY 2 cut(s) 271, 707
AsiGI ACCGGT 1 cut(s) 1146
AspLEI GCGC 2 cut(s) 316, 928
AspS9I GGNCC 1 cut(s) 888
AsuHPI GGTGA 3 cut(s) 1019, 1064, 1136
AsuNHI GCTAGC 1 cut(s) 481
AvaI CYCGRG 1 cut(s) 967
BanI GGYRCC 1 cut(s) 925
BanII GRGCYC 1 cut(s) 245
BauI CACGAG 1 cut(s) 40
BbsI GAAGAC 3 cut(s) 57, 167, 372
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 4 cut(s) 177, 320, 333, 509
BccI CCATC 3 cut(s) 256, 998, 1063
BceAI ACGGC 2 cut(s) 106, 737
BcgI CGANNNNNNTGC 2 cut(s) 535, 569
BciVI GTATCC 1 cut(s) 575
BcoDI GTCTC 2 cut(s) 670, 906
BfaI CTAG 2 cut(s) 482, 912
BfmI CTRYAG 1 cut(s) 544
BfoI RGCGCY 1 cut(s) 929
BfuAI ACCTGC 2 cut(s) 486, 551
BfuI GTATCC 1 cut(s) 575
BglI GCCNNNNNGGC 1 cut(s) 923
BlpI GCTNAGC 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 967
BmgBI CACGTC 1 cut(s) 658
BmgT120I GGNCC 1 cut(s) 888
BmiI GGNNCC 3 cut(s) 329, 476, 927
BmsI GCATC 1 cut(s) 840
BmtI GCTAGC 1 cut(s) 485
BpiI GAAGAC 3 cut(s) 57, 167, 372
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpmI CTGGAG 1 cut(s) 734
Bpu1102I GCTNAGC 1 cut(s) 145
BpuEI CTTGAG 2 cut(s) 86, 422
Bsa29I ATCGAT 1 cut(s) 30
BsaHI GRCGYC 3 cut(s) 410, 690, 926
BsaJI CCNNGG 1 cut(s) 863
BsaWI WCCGGW 3 cut(s) 1049, 1128, 1146
Bsc4I CCNNNNNNNGG 2 cut(s) 793, 953
Bse118I RCCGGY 5 cut(s) 70, 79, 786, 922, 1146
Bse1I ACTGG 1 cut(s) 854
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 863
BseGI GGATG 2 cut(s) 855, 1009
BseLI CCNNNNNNNGG 2 cut(s) 793, 953
BseMII CTCAG 3 cut(s) 159, 956, 965
BseNI ACTGG 1 cut(s) 854
BseRI GAGGAG 2 cut(s) 296, 894
BseX3I CGGCCG 3 cut(s) 119, 225, 722
BseXI GCAGC 4 cut(s) 177, 320, 333, 509
BsgI GTGCAG 1 cut(s) 340
Bsh1236I CGCG 4 cut(s) 97, 316, 590, 806
Bsh1285I CGRYCG 6 cut(s) 30, 122, 228, 725, 787, 933
BshFI GGCC 5 cut(s) 121, 227, 518, 724, 890
BshNI GGYRCC 1 cut(s) 925
BshTI ACCGGT 1 cut(s) 1146
BshVI ATCGAT 1 cut(s) 30
BsiEI CGRYCG 6 cut(s) 30, 122, 228, 725, 787, 933
BsiHKAI GWGCWC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 967
BslFI GGGAC 2 cut(s) 984, 1000
BslI CCNNNNNNNGG 2 cut(s) 793, 953
BsmAI GTCTC 2 cut(s) 670, 906
BsmFI GGGAC 2 cut(s) 984, 1000
BsnI GGCC 5 cut(s) 121, 227, 518, 724, 890
BsoBI CYCGRG 1 cut(s) 967
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 9 cut(s) 27, 221, 660, 684, 701, 714, 798, 951, 1115
Bsp1720I GCTNAGC 1 cut(s) 145
BspANI GGCC 5 cut(s) 121, 227, 518, 724, 890
BspCNI CTCAG 3 cut(s) 158, 955, 966
BspDI ATCGAT 1 cut(s) 30
BspFNI CGCG 4 cut(s) 97, 316, 590, 806
BspHI TCATGA 1 cut(s) 1162
BspLI GGNNCC 3 cut(s) 329, 476, 927
BspMAI CTGCAG 1 cut(s) 548
BspMI ACCTGC 2 cut(s) 486, 551
BspOI GCTAGC 1 cut(s) 485
BspPI GGATC 2 cut(s) 229, 806
BspQI GCTCTTC 2 cut(s) 180, 725
BspT107I GGYRCC 1 cut(s) 925
BsrBI CCGCTC 2 cut(s) 118, 1122
BsrFI RCCGGY 5 cut(s) 70, 79, 786, 922, 1146
BsrI ACTGG 1 cut(s) 854
BssAI RCCGGY 5 cut(s) 70, 79, 786, 922, 1146
BssECI CCNNGG 1 cut(s) 863
BssMI GATC 9 cut(s) 27, 221, 660, 684, 701, 714, 798, 951, 1115
BssNI GRCGYC 3 cut(s) 410, 690, 926
BssSI CACGAG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 40
Bst4CI ACNGT 3 cut(s) 359, 553, 864
Bst6I CTCTTC 4 cut(s) 180, 725, 1053, 1106
BstACI GRCGYC 3 cut(s) 410, 690, 926
BstC8I GCNNGC 3 cut(s) 483, 520, 527
BstDEI CTNAG 3 cut(s) 145, 942, 974
BstDSI CCRYGG 1 cut(s) 863
BstEII GGTNACC 1 cut(s) 1124
BstF5I GGATG 2 cut(s) 855, 1009
BstFNI CGCG 4 cut(s) 97, 316, 590, 806
BstH2I RGCGCY 1 cut(s) 929
BstHHI GCGC 2 cut(s) 316, 928
BstKTI GATC 9 cut(s) 30, 224, 663, 687, 704, 717, 801, 954, 1118
BstMAI GTCTC 2 cut(s) 670, 906
BstMBI GATC 9 cut(s) 27, 221, 660, 684, 701, 714, 798, 951, 1115
BstMCI CGRYCG 6 cut(s) 30, 122, 228, 725, 787, 933
BstPI GGTNACC 1 cut(s) 1124
BstSFI CTRYAG 1 cut(s) 544
BstUI CGCG 4 cut(s) 97, 316, 590, 806
BstV1I GCAGC 4 cut(s) 177, 320, 333, 509
BstV2I GAAGAC 3 cut(s) 57, 167, 372
BstZI CGGCCG 3 cut(s) 119, 225, 722
Bsu15I ATCGAT 1 cut(s) 30
BsuI GTATCC 1 cut(s) 575
BsuRI GGCC 5 cut(s) 121, 227, 518, 724, 890
BsuTUI ATCGAT 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 863
BtgZI GCGATG 2 cut(s) 787, 1082
BtrI CACGTC 1 cut(s) 658
BtsCI GGATG 2 cut(s) 855, 1009
BtsIMutI CAGTG 1 cut(s) 947
BveI ACCTGC 2 cut(s) 486, 551
Cac8I GCNNGC 3 cut(s) 483, 520, 527
CaiI CAGNNNCTG 1 cut(s) 949
CciI TCATGA 1 cut(s) 1162
CfoI GCGC 2 cut(s) 316, 928
Cfr10I RCCGGY 5 cut(s) 70, 79, 786, 922, 1146
Cfr13I GGNCC 1 cut(s) 888
ClaI ATCGAT 1 cut(s) 30
CseI GACGC 4 cut(s) 399, 579, 596, 763
Csp6I GTAC 2 cut(s) 763, 880
CspAI ACCGGT 1 cut(s) 1146
CviAII CATG 3 cut(s) 247, 426, 1163
CviQI GTAC 2 cut(s) 763, 880
DdeI CTNAG 3 cut(s) 145, 942, 974
DinI GGCGCC 1 cut(s) 927
DpnI GATC 9 cut(s) 29, 223, 662, 686, 703, 716, 800, 953, 1117
DpnII GATC 9 cut(s) 27, 221, 660, 684, 701, 714, 798, 951, 1115
DrdI GACNNNNNNGTC 2 cut(s) 593, 662
DseDI GACNNNNNNGTC 2 cut(s) 593, 662
EaeI YGGCCR 3 cut(s) 119, 225, 722
EagI CGGCCG 3 cut(s) 119, 225, 722
Eam1104I CTCTTC 4 cut(s) 180, 725, 1053, 1106
EarI CTCTTC 4 cut(s) 180, 725, 1053, 1106
EciI GGCGGA 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 243
EclXI CGGCCG 3 cut(s) 119, 225, 722
Eco147I AGGCCT 1 cut(s) 518
Eco24I GRGCYC 1 cut(s) 245
Eco52I CGGCCG 3 cut(s) 119, 225, 722
Eco53kI GAGCTC 1 cut(s) 243
Eco57I CTGAAG 2 cut(s) 69, 1124
Eco88I CYCGRG 1 cut(s) 967
Eco91I GGTNACC 1 cut(s) 1124
EcoICRI GAGCTC 1 cut(s) 243
EcoO65I GGTNACC 1 cut(s) 1124
EcoRI GAATTC 1 cut(s) 707
EcoT38I GRGCYC 1 cut(s) 245
EgeI GGCGCC 1 cut(s) 927
EheI GGCGCC 1 cut(s) 927
FaeI CATG 3 cut(s) 250, 429, 1166
FaiI YATR 5 cut(s) 248, 427, 645, 1164, 1171
FalI AAGNNNNNCTT 2 cut(s) 818, 850
FaqI GGGAC 2 cut(s) 984, 1000
FatI CATG 3 cut(s) 246, 425, 1162
FauI CCCGC 2 cut(s) 640, 977
FokI GGATG 2 cut(s) 862, 1016
FriOI GRGCYC 1 cut(s) 245
FspBI CTAG 2 cut(s) 482, 912
GlaI GCGC 2 cut(s) 315, 927
GsuI CTGGAG 1 cut(s) 734
HaeII RGCGCY 1 cut(s) 929
HaeIII GGCC 5 cut(s) 121, 227, 518, 724, 890
HgaI GACGC 4 cut(s) 399, 579, 596, 763
HhaI GCGC 2 cut(s) 316, 928
Hin1I GRCGYC 3 cut(s) 410, 690, 926
Hin1II CATG 3 cut(s) 250, 429, 1166
Hin6I GCGC 2 cut(s) 314, 926
HinP1I GCGC 2 cut(s) 314, 926
HphI GGTGA 3 cut(s) 1019, 1064, 1136
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 9 cut(s) 179, 270, 364, 376, 562, 581, 701, 706, 817
Hpy188III TCNNGA 8 cut(s) 47, 127, 712, 751, 775, 969, 1142, 1163
Hpy8I GTNNAC 1 cut(s) 126
Hpy99I CGWCG 9 cut(s) 157, 557, 590, 595, 692, 695, 730, 776, 1022
HpyAV CCTTC 2 cut(s) 1057, 1075
HpyCH4III ACNGT 3 cut(s) 359, 553, 864
HpyCH4IV ACGT 4 cut(s) 132, 405, 657, 690
HpyCH4V TGCA 6 cut(s) 193, 321, 336, 525, 546, 600
HpyF3I CTNAG 3 cut(s) 145, 942, 974
HpySE526I ACGT 4 cut(s) 132, 405, 657, 690
Hsp92I GRCGYC 3 cut(s) 410, 690, 926
Hsp92II CATG 3 cut(s) 250, 429, 1166
HspAI GCGC 2 cut(s) 314, 926
KasI GGCGCC 1 cut(s) 925
Kzo9I GATC 9 cut(s) 27, 221, 660, 684, 701, 714, 798, 951, 1115
LguI GCTCTTC 2 cut(s) 180, 725
LmnI GCTCC 4 cut(s) 248, 376, 625, 1099
Lsp1109I GCAGC 4 cut(s) 177, 320, 333, 509
LweI GCATC 1 cut(s) 840
MaeI CTAG 2 cut(s) 482, 912
MaeII ACGT 4 cut(s) 132, 405, 657, 690
MaeIII GTNAC 2 cut(s) 1124, 1142
MalI GATC 9 cut(s) 29, 223, 662, 686, 703, 716, 800, 953, 1117
MbiI CCGCTC 2 cut(s) 118, 1122
MboI GATC 9 cut(s) 27, 221, 660, 684, 701, 714, 798, 951, 1115
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 2 cut(s) 271, 707
MluI ACGCGT 1 cut(s) 588
Mly113I GGCGCC 1 cut(s) 926
MlyI GAGTC 8 cut(s) 52, 52, 392, 739, 934, 959, 985, 1031
MmeI TCCRAC 3 cut(s) 46, 426, 795
MslI CAYNNNNRTG 2 cut(s) 656, 806
MspA1I CMGCKG 3 cut(s) 149, 168, 333
MvnI CGCG 4 cut(s) 97, 316, 590, 806
NarI GGCGCC 1 cut(s) 926
NdeII GATC 9 cut(s) 27, 221, 660, 684, 701, 714, 798, 951, 1115
NheI GCTAGC 1 cut(s) 481
NlaIII CATG 3 cut(s) 250, 429, 1166
NlaIV GGNNCC 3 cut(s) 329, 476, 927
NmeAIII GCCGAG 3 cut(s) 253, 264, 901
NmuCI GTSAC 2 cut(s) 1124, 1142
PagI TCATGA 1 cut(s) 1162
PaqCI CACCTGC 1 cut(s) 551
PceI AGGCCT 1 cut(s) 518
PciSI GCTCTTC 2 cut(s) 180, 725
PcsI WCGNNNNNNNCGW 3 cut(s) 780, 821, 960
PfeI GAWTC 4 cut(s) 174, 371, 422, 935
PflFI GACNNNGTC 1 cut(s) 975
PinAI ACCGGT 1 cut(s) 1146
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 8 cut(s) 51, 52, 392, 739, 934, 959, 984, 1030
PluTI GGCGCC 1 cut(s) 929
PpsI GAGTC 8 cut(s) 51, 52, 392, 739, 934, 959, 984, 1030
Psp124BI GAGCTC 1 cut(s) 245
PspEI GGTNACC 1 cut(s) 1124
PspN4I GGNNCC 3 cut(s) 329, 476, 927
PspPI GGNCC 1 cut(s) 888
PstI CTGCAG 1 cut(s) 548
PstNI CAGNNNCTG 1 cut(s) 949
PsyI GACNNNGTC 1 cut(s) 975
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 2 cut(s) 764, 881
RsaNI GTAC 2 cut(s) 763, 880
RseI CAYNNNNRTG 2 cut(s) 656, 806
SacI GAGCTC 1 cut(s) 245
SapI GCTCTTC 2 cut(s) 180, 725
Sau3AI GATC 9 cut(s) 27, 221, 660, 684, 701, 714, 798, 951, 1115
Sau96I GGNCC 1 cut(s) 888
SchI GAGTC 8 cut(s) 52, 52, 392, 739, 934, 959, 985, 1031
SduI GDGCHC 1 cut(s) 245
SfaNI GCATC 1 cut(s) 840
SfcI CTRYAG 1 cut(s) 544
SfoI GGCGCC 1 cut(s) 927
SgrAI CRCCGGYG 1 cut(s) 922
SmiMI CAYNNNNRTG 2 cut(s) 656, 806
SmlI CTYRAG 2 cut(s) 101, 437
SmoI CTYRAG 2 cut(s) 101, 437
Sse9I AATT 2 cut(s) 271, 707
SseBI AGGCCT 1 cut(s) 518
SspDI GGCGCC 1 cut(s) 925
SspMI CTAG 2 cut(s) 482, 912
SstI GAGCTC 1 cut(s) 245
StuI AGGCCT 1 cut(s) 518
TaaI ACNGT 3 cut(s) 359, 553, 864
TaiI ACGT 4 cut(s) 135, 408, 660, 693
TaqII GACCGA 2 cut(s) 583, 947
TasI AATT 2 cut(s) 271, 707
TatI WGTACW 1 cut(s) 879
TfiI GAWTC 4 cut(s) 174, 371, 422, 935
TscAI CASTG 1 cut(s) 954
TseFI GTSAC 2 cut(s) 1124, 1142
TseI GCWGC 4 cut(s) 190, 321, 333, 522
Tsp45I GTSAC 2 cut(s) 1124, 1142
TspDTI ATGAA 2 cut(s) 29, 265
TspGWI ACGGA 5 cut(s) 170, 222, 363, 612, 750
TspRI CASTG 1 cut(s) 954
Tth111I GACNNNGTC 1 cut(s) 975
XapI RAATTY 2 cut(s) 271, 707
XcmI CCANNNNNNNNNTGG 1 cut(s) 861
XspI CTAG 2 cut(s) 482, 912
ZraI GACGTC 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.