Rroxscaffold_7G00177680

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007688
Physical Location & Seq
Forward (+)
17262892 .. 17265270
2379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00177680.1

Sequence Viewer

Length: 1215 bp
ATGCCGTTTCCGATGAAAATACAGCCGATTGAGTCACACGCGGAGCCTGTGGAAGCGGCGACTAGGTTCGAACTGGTGAAGCCGGTGGCCAAGTCACGGTTCAAGAGGCTCTTCGAGCGACAGTTCACGAGCGTATTGAGAACAACGACGCCTGGAGCGGTGGCGGCGGAGGAGAAGGAGAAGGTCGTCGTCTGCGGCGTCGAGGAGCTGCATTTCAACAAAGACGGCTTCACGGACTTGGCCGGCGGCGAGTTCGAGCCGAGCTCAGTCTGCTTGGCGAATATGGTGCAGAACTTCATCGAAGAGAGCAACGAGAAGCAATCGTCGGCCAGGTGCAGCCGGAACCGCTGTAACTGCTTCAACGGAAACTGCGAGGACAGCTCCGACGACGAATCGGAGCCTTTCCCTTTCGGTTTCGGCGATTCCAATCTGGCTTCATCCGGCGAAGCATGTGAGCTTCTCAAGAGTTTGGTGTCGTGCCCAAGTCTATGCGAAAGGAATTTGCTAGCGGACACAGCTAGAATCGTCGAGAAAAACAAGATGTGCAAGCGTAAAGACGACAATGGCAGACTGGTTGTTACTGATAATCTGTTAGATCTCGGATACGACGCTTCAGTCTGCAAAACTCGTTGGGAAAAATCCCCTTCCTATCCTTCCGGGGAGTACGAGTACATTGACGTGATCGTAAATGGGGAGAGGCTGCTAATCGACGTGGATTTCCGATCGGAGTTTGAGATTGCTCGACCGACGAAGAGCTACAAGGCGATTCTGCAGGCTCTTCCTTGTATTTTCGTTGGGAAGCCCGATCGGCTGAGGAGGATCATCGGAATTGTTTCGGAGGCGGCGAAGCAGAGCCTGAAGAAGAAGGGAATGCACATTCCGCCGTGGAGGAAAGCAGAGTACATCAAAGCCAAGTGGCTCTCTCCTCACACCCGCGCCTCACCCTCTGTTAATTCCTCACCGGATTCCTTGCCCGAAAAGACCGAGACCCAGTCTTTGATCAAGTCCATGGAGTTTGAACAGAGTCGTACCGAGTTGGCAAAGTCGGTGGACTATTCTGAGCCGGAGGAGTCGGTTTTTGAGTTGTCTGAGGACGAAGAGGAGAAGGCGGTGGTGAAGGAGTGGAAGCCGCCGGAGGTGAAGCCCAGGAGATCATCAGGGGTGAAGATTGTGACTGGTTTGGCTTCAGTCATGGAAGATGAAAATGAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

404

Amino Acids

45.34

Weight (kDa)

5.26

Isoelectric Point (pI)

61.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 94 - 312 2.6e-76 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 614
AccBSI CCGCTC 1 cut(s) 158
AccII CGCG 2 cut(s) 41, 936
AclWI GGATC 1 cut(s) 827
AcoI YGGCCR 3 cut(s) 87, 240, 327
AcsI RAATTY 1 cut(s) 499
AcuI CTGAAG 3 cut(s) 597, 878, 1170
AcyI GRCGYC 2 cut(s) 149, 198
AfaI GTAC 4 cut(s) 665, 671, 902, 1030
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 4 cut(s) 103, 217, 361, 1019
AjiI CACGTC 2 cut(s) 679, 712
AjnI CCWGG 3 cut(s) 151, 329, 1145
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 6 cut(s) 208, 264, 381, 457, 518, 756
AluI AGCT 6 cut(s) 208, 264, 381, 457, 518, 756
Alw21I GWGCWC 1 cut(s) 266
Alw26I GTCTC 1 cut(s) 980
AlwI GGATC 1 cut(s) 827
AlwNI CAGNNNCTG 1 cut(s) 856
AoxI GGCC 3 cut(s) 87, 240, 327
ApeKI GCWGC 3 cut(s) 208, 336, 700
ApoI RAATTY 1 cut(s) 499
ArsI GACNNNNNNTTYG 2 cut(s) 979, 1011
Asp700I GAANNNNTTC 1 cut(s) 832
AspLEI GCGC 1 cut(s) 938
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 6 cut(s) 88, 933, 951, 1126, 1150, 1174
AsuII TTCGAA 1 cut(s) 69
AsuNHI GCTAGC 1 cut(s) 505
BaeGI GKGCMC 1 cut(s) 482
BalI TGGCCA 1 cut(s) 89
BanII GRGCYC 1 cut(s) 266
BauI CACGAG 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 266
BbvCI CCTCAGC 1 cut(s) 812
BbvI GCAGC 3 cut(s) 195, 348, 687
BceAI ACGGC 2 cut(s) 241, 868
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 3 cut(s) 153, 331, 1147
BciVI GTATCC 1 cut(s) 596
BclI TGATCA 1 cut(s) 999
BcnI CCSGG 1 cut(s) 658
BcoDI GTCTC 1 cut(s) 980
BfaI CTAG 3 cut(s) 63, 506, 519
BfmI CTRYAG 1 cut(s) 770
BfuI GTATCC 1 cut(s) 596
BglI GCCNNNNNGGC 1 cut(s) 808
BglII AGATCT 1 cut(s) 595
BisI GCNGC 9 cut(s) 57, 165, 196, 209, 247, 337, 701, 843, 1130
BlsI GCNGC 9 cut(s) 58, 166, 197, 210, 248, 338, 702, 844, 1131
Bme1390I CCNGG 4 cut(s) 153, 331, 658, 1147
BmgBI CACGTC 2 cut(s) 679, 712
BmiI GGNNCC 3 cut(s) 45, 344, 399
BmrFI CCNGG 4 cut(s) 153, 331, 658, 1147
BmrI ACTGGG 1 cut(s) 985
BmtI GCTAGC 1 cut(s) 509
BmuI ACTGGG 1 cut(s) 985
BplI GAGNNNNNCTC 4 cut(s) 248, 280, 365, 397
BpmI CTGGAG 1 cut(s) 174
Bpu10I CCTNAGC 1 cut(s) 812
Bpu14I TTCGAA 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 446
BpuMI CCSGG 1 cut(s) 658
BsaBI GATNNNNATC 1 cut(s) 426
BsaHI GRCGYC 2 cut(s) 149, 198
BsaI GGTCTC 1 cut(s) 980
BsaJI CCNNGG 4 cut(s) 657, 884, 1008, 1145
BsaWI WCCGGW 1 cut(s) 961
BsaXI ACNNNNNCTCC 2 cut(s) 653, 683
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse118I RCCGGY 2 cut(s) 82, 242
Bse1I ACTGG 4 cut(s) 78, 576, 991, 1180
Bse8I GATNNNNATC 1 cut(s) 426
BseBI CCWGG 3 cut(s) 153, 331, 1147
BseDI CCNNGG 4 cut(s) 657, 884, 1008, 1145
BseGI GGATG 1 cut(s) 437
BseJI GATNNNNATC 1 cut(s) 426
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMII CTCAG 4 cut(s) 279, 803, 1050, 1080
BseNI ACTGG 4 cut(s) 78, 576, 991, 1180
BseRI GAGGAG 6 cut(s) 185, 218, 829, 915, 1082, 1115
BseSI GKGCMC 1 cut(s) 482
BseXI GCAGC 3 cut(s) 195, 348, 687
BsgI GTGCAG 2 cut(s) 308, 355
Bsh1236I CGCG 2 cut(s) 41, 936
Bsh1285I CGRYCG 3 cut(s) 725, 746, 808
BshFI GGCC 3 cut(s) 89, 242, 329
BsiEI CGRYCG 3 cut(s) 725, 746, 808
BsiHKAI GWGCWC 1 cut(s) 266
BsiSI CCGG 8 cut(s) 83, 243, 340, 441, 657, 962, 1064, 1133
BslI CCNNNNNNNGG 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 980
BsmI GAATGC 1 cut(s) 876
BsnI GGCC 3 cut(s) 89, 242, 329
Bso31I GGTCTC 1 cut(s) 980
Bsp119I TTCGAA 1 cut(s) 69
Bsp1286I GDGCHC 2 cut(s) 266, 482
Bsp143I GATC 7 cut(s) 595, 681, 722, 805, 819, 999, 1151
Bsp19I CCATGG 1 cut(s) 1008
BspANI GGCC 3 cut(s) 89, 242, 329
BspCNI CTCAG 4 cut(s) 278, 804, 1051, 1081
BspFNI CGCG 2 cut(s) 41, 936
BspLI GGNNCC 3 cut(s) 45, 344, 399
BspMAI CTGCAG 1 cut(s) 774
BspOI GCTAGC 1 cut(s) 509
BspPI GGATC 1 cut(s) 827
BspQI GCTCTTC 3 cut(s) 116, 746, 783
BspT104I TTCGAA 1 cut(s) 69
BspTNI GGTCTC 1 cut(s) 980
BsrBI CCGCTC 1 cut(s) 158
BsrFI RCCGGY 2 cut(s) 82, 242
BsrI ACTGG 4 cut(s) 78, 576, 991, 1180
BssAI RCCGGY 2 cut(s) 82, 242
BssECI CCNNGG 4 cut(s) 657, 884, 1008, 1145
BssMI GATC 7 cut(s) 595, 681, 722, 805, 819, 999, 1151
BssNI GRCGYC 2 cut(s) 149, 198
BssSI CACGAG 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 1008
Bst2BI CACGAG 1 cut(s) 127
Bst2UI CCWGG 3 cut(s) 153, 331, 1147
Bst4CI ACNGT 2 cut(s) 99, 123
Bst6I CTCTTC 5 cut(s) 116, 297, 746, 783, 1092
BstACI GRCGYC 2 cut(s) 149, 198
BstBI TTCGAA 1 cut(s) 69
BstC8I GCNNGC 4 cut(s) 244, 507, 548, 774
BstDEI CTNAG 4 cut(s) 265, 812, 1059, 1089
BstDSI CCRYGG 2 cut(s) 884, 1008
BstF5I GGATG 1 cut(s) 437
BstFNI CGCG 2 cut(s) 41, 936
BstHHI GCGC 1 cut(s) 938
BstKTI GATC 7 cut(s) 598, 684, 725, 808, 822, 1002, 1154
BstMAI GTCTC 1 cut(s) 980
BstMBI GATC 7 cut(s) 595, 681, 722, 805, 819, 999, 1151
BstMCI CGRYCG 3 cut(s) 725, 746, 808
BstMWI GCNNNNNNNGC 9 cut(s) 115, 164, 270, 345, 354, 378, 515, 808, 880
BstNI CCWGG 3 cut(s) 153, 331, 1147
BstNSI RCATGY 1 cut(s) 453
BstSCI CCNGG 4 cut(s) 151, 329, 656, 1145
BstSFI CTRYAG 1 cut(s) 770
BstSLI GKGCMC 1 cut(s) 482
BstUI CGCG 2 cut(s) 41, 936
BstV1I GCAGC 3 cut(s) 195, 348, 687
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BsuI GTATCC 1 cut(s) 596
BsuRI GGCC 3 cut(s) 89, 242, 329
BtgI CCRYGG 2 cut(s) 884, 1008
BtrI CACGTC 2 cut(s) 679, 712
BtsCI GGATG 1 cut(s) 437
Cac8I GCNNGC 4 cut(s) 244, 507, 548, 774
CaiI CAGNNNCTG 1 cut(s) 856
CfoI GCGC 1 cut(s) 938
Cfr10I RCCGGY 2 cut(s) 82, 242
CseI GACGC 3 cut(s) 157, 187, 617
Csp6I GTAC 4 cut(s) 664, 670, 901, 1029
CspCI CAANNNNNGTGG 2 cut(s) 1029, 1064
CviAII CATG 4 cut(s) 450, 1009, 1192, 1212
CviQI GTAC 4 cut(s) 664, 670, 901, 1029
DdeI CTNAG 4 cut(s) 265, 812, 1059, 1089
DpnI GATC 7 cut(s) 597, 683, 724, 807, 821, 1001, 1153
DpnII GATC 7 cut(s) 595, 681, 722, 805, 819, 999, 1151
DrdI GACNNNNNNGTC 1 cut(s) 614
DseDI GACNNNNNNGTC 1 cut(s) 614
EaeI YGGCCR 3 cut(s) 87, 240, 327
Eam1104I CTCTTC 5 cut(s) 116, 297, 746, 783, 1092
EarI CTCTTC 5 cut(s) 116, 297, 746, 783, 1092
EciI GGCGGA 2 cut(s) 182, 870
Ecl136II GAGCTC 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 1008
Eco24I GRGCYC 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 980
Eco53kI GAGCTC 1 cut(s) 264
Eco57I CTGAAG 3 cut(s) 597, 878, 1170
EcoICRI GAGCTC 1 cut(s) 264
EcoRII CCWGG 3 cut(s) 151, 329, 1145
EcoT14I CCWWGG 1 cut(s) 1008
EcoT38I GRGCYC 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 1008
FaeI CATG 4 cut(s) 453, 1012, 1195, 1215
FaiI YATR 6 cut(s) 284, 451, 490, 1010, 1193, 1213
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 4 cut(s) 449, 1008, 1191, 1211
FauI CCCGC 1 cut(s) 941
FbaI TGATCA 1 cut(s) 999
Fnu4HI GCNGC 9 cut(s) 57, 165, 196, 209, 247, 337, 701, 843, 1130
FokI GGATG 1 cut(s) 424
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 9 cut(s) 57, 165, 196, 209, 247, 337, 701, 843, 1130
FspBI CTAG 3 cut(s) 63, 506, 519
GlaI GCGC 1 cut(s) 937
GluI GCNGC 9 cut(s) 57, 165, 196, 209, 247, 337, 701, 843, 1130
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 3 cut(s) 89, 242, 329
HapII CCGG 8 cut(s) 83, 243, 340, 441, 657, 962, 1064, 1133
HgaI GACGC 3 cut(s) 157, 187, 617
HhaI GCGC 1 cut(s) 938
Hin1I GRCGYC 2 cut(s) 149, 198
Hin1II CATG 4 cut(s) 453, 1012, 1195, 1215
Hin6I GCGC 1 cut(s) 936
HinP1I GCGC 1 cut(s) 936
HinfI GANTC 8 cut(s) 32, 392, 422, 522, 766, 965, 1024, 1070
HpaII CCGG 8 cut(s) 83, 243, 340, 441, 657, 962, 1064, 1133
HphI GGTGA 6 cut(s) 88, 933, 951, 1126, 1150, 1174
Hpy166II GTNNAC 2 cut(s) 126, 1051
Hpy188III TCNNGA 4 cut(s) 103, 127, 463, 529
Hpy8I GTNNAC 2 cut(s) 126, 1051
HpyAV CCTTC 7 cut(s) 169, 175, 654, 663, 859, 1099, 1111
HpyCH4III ACNGT 2 cut(s) 99, 123
HpyCH4IV ACGT 2 cut(s) 678, 711
HpyCH4V TGCA 7 cut(s) 211, 289, 336, 546, 621, 772, 874
HpyF10VI GCNNNNNNNGC 9 cut(s) 115, 164, 270, 345, 354, 378, 515, 808, 880
HpyF3I CTNAG 4 cut(s) 265, 812, 1059, 1089
HpySE526I ACGT 2 cut(s) 678, 711
Hsp92I GRCGYC 2 cut(s) 149, 198
Hsp92II CATG 4 cut(s) 453, 1012, 1195, 1215
HspAI GCGC 1 cut(s) 936
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 999
Kzo9I GATC 7 cut(s) 595, 681, 722, 805, 819, 999, 1151
LguI GCTCTTC 3 cut(s) 116, 746, 783
LmnI GCTCC 5 cut(s) 43, 155, 205, 386, 397
Lsp1109I GCAGC 3 cut(s) 195, 348, 687
MaeI CTAG 3 cut(s) 63, 506, 519
MaeII ACGT 2 cut(s) 678, 711
MaeIII GTNAC 5 cut(s) 33, 93, 350, 577, 1171
MalI GATC 7 cut(s) 597, 683, 724, 807, 821, 1001, 1153
MbiI CCGCTC 1 cut(s) 158
MboI GATC 7 cut(s) 595, 681, 722, 805, 819, 999, 1151
MboII GAAGA 9 cut(s) 103, 314, 763, 770, 871, 874, 1109, 1177, 1208
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 2 cut(s) 266, 482
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 3 cut(s) 499, 828, 952
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 3 cut(s) 41, 1033, 1079
MmeI TCCRAC 1 cut(s) 408
Mox20I TGGCCA 1 cut(s) 89
MroNI GCCGGC 1 cut(s) 242
MroXI GAANNNNTTC 1 cut(s) 832
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 951
MslI CAYNNNNRTG 1 cut(s) 677
Msp20I TGGCCA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 348
MspI CCGG 8 cut(s) 83, 243, 340, 441, 657, 962, 1064, 1133
MspR9I CCNGG 4 cut(s) 153, 331, 658, 1147
Mva1269I GAATGC 1 cut(s) 876
MvaI CCWGG 3 cut(s) 153, 331, 1147
MvnI CGCG 2 cut(s) 41, 936
MwoI GCNNNNNNNGC 9 cut(s) 115, 164, 270, 345, 354, 378, 515, 808, 880
NaeI GCCGGC 1 cut(s) 244
NciI CCSGG 1 cut(s) 658
NcoI CCATGG 1 cut(s) 1008
NdeII GATC 7 cut(s) 595, 681, 722, 805, 819, 999, 1151
NgoMIV GCCGGC 1 cut(s) 242
NheI GCTAGC 1 cut(s) 505
NlaIII CATG 4 cut(s) 453, 1012, 1195, 1215
NlaIV GGNNCC 3 cut(s) 45, 344, 399
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 3 cut(s) 33, 93, 1171
NspI RCATGY 1 cut(s) 453
NspV TTCGAA 1 cut(s) 69
PciSI GCTCTTC 3 cut(s) 116, 746, 783
PcsI WCGNNNNNNNCGW 4 cut(s) 195, 369, 417, 842
PctI GAATGC 1 cut(s) 876
PdiI GCCGGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 832
PfeI GAWTC 5 cut(s) 392, 422, 522, 766, 965
PflFI GACNNNGTC 1 cut(s) 991
PkrI GCNGC 9 cut(s) 58, 166, 197, 210, 248, 338, 702, 844, 1131
Ple19I CGATCG 2 cut(s) 725, 808
PleI GAGTC 3 cut(s) 40, 1032, 1078
PpsI GAGTC 3 cut(s) 40, 1032, 1078
Psp124BI GAGCTC 1 cut(s) 266
Psp6I CCWGG 3 cut(s) 151, 329, 1145
PspGI CCWGG 3 cut(s) 151, 329, 1145
PspN4I GGNNCC 3 cut(s) 45, 344, 399
PstI CTGCAG 1 cut(s) 774
PstNI CAGNNNCTG 1 cut(s) 856
PsuI RGATCY 1 cut(s) 595
PsyI GACNNNGTC 1 cut(s) 991
PvuI CGATCG 2 cut(s) 725, 808
RsaI GTAC 4 cut(s) 665, 671, 902, 1030
RsaNI GTAC 4 cut(s) 664, 670, 901, 1029
RseI CAYNNNNRTG 1 cut(s) 677
SacI GAGCTC 1 cut(s) 266
SapI GCTCTTC 3 cut(s) 116, 746, 783
SaqAI TTAA 1 cut(s) 951
SatI GCNGC 9 cut(s) 57, 165, 196, 209, 247, 337, 701, 843, 1130
Sau3AI GATC 7 cut(s) 595, 681, 722, 805, 819, 999, 1151
SchI GAGTC 3 cut(s) 41, 1033, 1079
ScrFI CCNGG 4 cut(s) 153, 331, 658, 1147
SduI GDGCHC 2 cut(s) 266, 482
SfcI CTRYAG 1 cut(s) 770
SfuI TTCGAA 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 3 cut(s) 499, 828, 952
SspMI CTAG 3 cut(s) 63, 506, 519
SstI GAGCTC 1 cut(s) 266
StyD4I CCNGG 4 cut(s) 151, 329, 656, 1145
StyI CCWWGG 1 cut(s) 1008
TaaI ACNGT 2 cut(s) 99, 123
TaiI ACGT 2 cut(s) 681, 714
TaqI TCGA 8 cut(s) 69, 114, 201, 255, 300, 528, 708, 742
TaqII GACCGA 2 cut(s) 760, 998
TasI AATT 3 cut(s) 499, 828, 952
TatI WGTACW 2 cut(s) 669, 900
TauI GCSGC 6 cut(s) 59, 167, 198, 249, 845, 1132
TfiI GAWTC 5 cut(s) 392, 422, 522, 766, 965
Tru1I TTAA 1 cut(s) 951
Tru9I TTAA 1 cut(s) 951
TseFI GTSAC 3 cut(s) 33, 93, 1171
TseI GCWGC 3 cut(s) 208, 336, 700
Tsp45I GTSAC 3 cut(s) 33, 93, 1171
TspDTI ATGAA 4 cut(s) 29, 286, 426, 1215
TspGWI ACGGA 2 cut(s) 248, 378
Tth111I GACNNNGTC 1 cut(s) 991
XapI RAATTY 1 cut(s) 499
XceI RCATGY 1 cut(s) 453
XmnI GAANNNNTTC 1 cut(s) 832
XspI CTAG 3 cut(s) 63, 506, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.