FvH4_2g22770

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007688
Physical Location & Seq
Reverse (-)
18712978 .. 18715513
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g22770.t1

Sequence Viewer

Length: 1149 bp
ATGCCGTTCGCAATGAAAATCCAGCCAATCGGATCACACGCGCCGCTACCGGAAGTGGCGAATCGCTTTGAACCGCTGAAGCCGGCGGCCAAGTCACGGTTCAAGCGGCTCTTTGAGCGACAGTTCACGAGCGTGTTGAGAACAGCCACGTCGGCGGAGAAGGAGAAGGTCGGCGGCGGCGACGGCGAGTTCGAGCCGAGCTCAGTCTGCTTGGCGAATATGGTGCAGAACTTCATGGAGGAGAGCAACGAGAAGCAATCAGCGAGGTGCAGCCGGAACCGCTGTAATTGCTTCAACGGCAACACCACCGACGACAGCTCCGACGACGAATGGGAGCCTCTCGGTTTTGGTGACTCCAATCTGGCTTCATCTGGCGAAGCATGTGAGCTTCTCAAGAGCTTGGTGTCGTGCCCCAGTCTGTGTGAAAGGAATTTGCTAGCGGACACAGCTAGAATCGTCGAGAAAAACAAGATGTGCAAGCGTAAGGACGACAATGGAAGACTGGTCGTTACTGATCATCTCTTAGCGCTCGGATACGACGCTTCAGTCTGCAAATCTCGTTGGGAAAAATCACCTTCCTATCCTTCTGGGGAGTATGAGTACATTGACGTGATCGTGAAAGGGGAGAGGCTGCTAATCGACATTGATTTCAGATCGGAGTTTGAGATTGCCCGGCCGACGAAGAGCTACAAGGCGATTCTCCAGACACTTCCTTATATTTTTGTTGGGAAGCCCTATAGGCTGAGGAGGATCATCGGCATTGTTGCGGAGGCGGGGAAGCAGAGCTTGAAGAAGAAGGGAATGCCCGTTCCACCGTGGAGGAAAGCAGAGTACATCAAAGCCAAGTGGCTCTCTCCACACCCTAGGGCTACAGTCTCCAACAATTCCTCACCGGATTCCTTGCCCAAAAAGACCGAGTCCCAGTCTTTTGTCAAGTCTGTGGAGTTTGAACAGAGTCGTACTGAGTTGATAAAGTTGGTGGAATCTTGTGAGCAGGAAGAGTCTGTGTTTGAGTTGTCTGAGAGTGATGAGGAGATGGAGAAGGCGGTGAAGGAGTGGAAGCCGCTCGAGGTGAAGCCCAGGAGAGCATCAGGGGTGAAGATTGTGGCTGGTTTGGCTTCAGTCATGGAAGATGAAAATGAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

383

Amino Acids

42.95

Weight (kDa)

6.44

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 73 - 289 5.7e-74 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 545
AccBSI CCGCTC 1 cut(s) 1066
AccII CGCG 1 cut(s) 41
AclWI GGATC 2 cut(s) 40, 758
AcoI YGGCCR 2 cut(s) 87, 674
AcsI RAATTY 1 cut(s) 430
AcuI CTGAAG 3 cut(s) 98, 528, 1104
AfaI GTAC 3 cut(s) 602, 833, 961
AfeI AGCGCT 1 cut(s) 528
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 5 cut(s) 71, 103, 295, 790, 950
AjiI CACGTC 2 cut(s) 150, 610
AjnI CCWGG 1 cut(s) 1079
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AleI CACNNNNGTG 1 cut(s) 131
AloI GAACNNNNNNTCC 2 cut(s) 792, 824
AluBI AGCT 7 cut(s) 201, 318, 388, 399, 449, 687, 786
AluI AGCT 7 cut(s) 201, 318, 388, 399, 449, 687, 786
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 880
AlwI GGATC 2 cut(s) 40, 758
Ama87I CYCGRG 1 cut(s) 1067
Aor51HI AGCGCT 1 cut(s) 528
AoxI GGCC 2 cut(s) 87, 674
ApeKI GCWGC 2 cut(s) 270, 631
ApoI RAATTY 1 cut(s) 430
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AspA2I CCTAGG 1 cut(s) 863
AspLEI GCGC 2 cut(s) 43, 529
AsuC2I CCSGG 1 cut(s) 673
AsuHPI GGTGA 6 cut(s) 362, 564, 882, 1060, 1084, 1108
AsuNHI GCTAGC 1 cut(s) 436
AvaI CYCGRG 1 cut(s) 1067
AvrII CCTAGG 1 cut(s) 863
BaeGI GKGCMC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 203
BauI CACGAG 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 505
Bbv12I GWGCWC 1 cut(s) 203
BbvCI CCTCAGC 1 cut(s) 743
BbvI GCAGC 2 cut(s) 282, 618
BccI CCATC 1 cut(s) 1030
BceAI ACGGC 2 cut(s) 199, 313
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BciT130I CCWGG 1 cut(s) 1081
BciVI GTATCC 1 cut(s) 527
BclI TGATCA 1 cut(s) 514
BcnI CCSGG 1 cut(s) 673
BcoDI GTCTC 1 cut(s) 880
BfaI CTAG 3 cut(s) 437, 450, 864
BfmI CTRYAG 2 cut(s) 736, 870
BfoI RGCGCY 1 cut(s) 530
BfuI GTATCC 1 cut(s) 527
BglI GCCNNNNNGGC 2 cut(s) 152, 739
BisI GCNGC 8 cut(s) 44, 87, 107, 175, 178, 271, 632, 1064
BlnI CCTAGG 1 cut(s) 863
BlsI GCNGC 8 cut(s) 45, 88, 108, 176, 179, 272, 633, 1065
Bme1390I CCNGG 2 cut(s) 673, 1081
BmeT110I CYCGRG 1 cut(s) 1067
BmgBI CACGTC 2 cut(s) 150, 610
BmiI GGNNCC 2 cut(s) 278, 336
BmrFI CCNGG 2 cut(s) 673, 1081
BmrI ACTGGG 2 cut(s) 408, 916
BmsI GCATC 1 cut(s) 1097
BmtI GCTAGC 1 cut(s) 440
BmuI ACTGGG 2 cut(s) 408, 916
BpiI GAAGAC 1 cut(s) 505
BplI GAGNNNNNCTC 2 cut(s) 185, 217
BpmI CTGGAG 1 cut(s) 686
Bpu10I CCTNAGC 1 cut(s) 743
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 673
BsaJI CCNNGG 3 cut(s) 815, 863, 1079
BsaWI WCCGGW 2 cut(s) 49, 892
BsaXI ACNNNNNCTCC 4 cut(s) 302, 332, 584, 614
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 3 cut(s) 414, 507, 922
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 1081
BseDI CCNNGG 3 cut(s) 815, 863, 1079
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 4 cut(s) 216, 734, 954, 1011
BseNI ACTGG 3 cut(s) 414, 507, 922
BseRI GAGGAG 3 cut(s) 254, 760, 1046
BseSI GKGCMC 1 cut(s) 413
BseX3I CGGCCG 1 cut(s) 674
BseXI GCAGC 2 cut(s) 282, 618
BsgI GTGCAG 2 cut(s) 245, 289
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 677
BshFI GGCC 2 cut(s) 89, 676
BsiEI CGRYCG 1 cut(s) 677
BsiHKAI GWGCWC 1 cut(s) 203
BsiHKCI CYCGRG 1 cut(s) 1067
BsiSI CCGG 5 cut(s) 50, 83, 274, 673, 893
BslFI GGGAC 1 cut(s) 904
BslI CCNNNNNNNGG 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 880
BsmFI GGGAC 1 cut(s) 904
BsmI GAATGC 1 cut(s) 807
BsnI GGCC 2 cut(s) 89, 676
BsoBI CYCGRG 1 cut(s) 1067
Bsp1286I GDGCHC 2 cut(s) 203, 413
Bsp143I GATC 5 cut(s) 32, 514, 612, 653, 750
BspANI GGCC 2 cut(s) 89, 676
BspCNI CTCAG 4 cut(s) 215, 735, 955, 1012
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 2 cut(s) 278, 336
BspOI GCTAGC 1 cut(s) 440
BspPI GGATC 2 cut(s) 40, 758
BspQI GCTCTTC 1 cut(s) 677
BsrBI CCGCTC 1 cut(s) 1066
BsrDI GCAATG 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 3 cut(s) 414, 507, 922
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 3 cut(s) 815, 863, 1079
BssMI GATC 5 cut(s) 32, 514, 612, 653, 750
BssSI CACGAG 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 863
Bst2BI CACGAG 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 1081
Bst4CI ACNGT 4 cut(s) 99, 123, 816, 874
Bst6I CTCTTC 2 cut(s) 677, 993
BstC8I GCNNGC 3 cut(s) 84, 438, 479
BstDEI CTNAG 5 cut(s) 202, 523, 743, 963, 1020
BstDSI CCRYGG 1 cut(s) 815
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 530
BstHHI GCGC 2 cut(s) 43, 529
BstKTI GATC 5 cut(s) 35, 517, 615, 656, 753
BstMAI GTCTC 1 cut(s) 880
BstMBI GATC 5 cut(s) 32, 514, 612, 653, 750
BstMCI CGRYCG 1 cut(s) 677
BstNI CCWGG 1 cut(s) 1081
BstNSI RCATGY 1 cut(s) 384
BstSCI CCNGG 2 cut(s) 671, 1079
BstSFI CTRYAG 2 cut(s) 736, 870
BstSLI GKGCMC 1 cut(s) 413
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 2 cut(s) 282, 618
BstV2I GAAGAC 1 cut(s) 505
BstZI CGGCCG 1 cut(s) 674
BsuI GTATCC 1 cut(s) 527
BsuRI GGCC 2 cut(s) 89, 676
BtgI CCRYGG 1 cut(s) 815
BtrI CACGTC 2 cut(s) 150, 610
Cac8I GCNNGC 3 cut(s) 84, 438, 479
CfoI GCGC 2 cut(s) 43, 529
Cfr10I RCCGGY 1 cut(s) 82
CseI GACGC 1 cut(s) 548
Csp6I GTAC 3 cut(s) 601, 832, 960
CviAII CATG 4 cut(s) 235, 381, 1126, 1146
CviQI GTAC 3 cut(s) 601, 832, 960
DdeI CTNAG 5 cut(s) 202, 523, 743, 963, 1020
DpnI GATC 5 cut(s) 34, 516, 614, 655, 752
DpnII GATC 5 cut(s) 32, 514, 612, 653, 750
DrdI GACNNNNNNGTC 1 cut(s) 545
DseDI GACNNNNNNGTC 1 cut(s) 545
EaeI YGGCCR 2 cut(s) 87, 674
EagI CGGCCG 1 cut(s) 674
Eam1104I CTCTTC 2 cut(s) 677, 993
EarI CTCTTC 2 cut(s) 677, 993
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 201
EclXI CGGCCG 1 cut(s) 674
Eco130I CCWWGG 1 cut(s) 863
Eco24I GRGCYC 1 cut(s) 203
Eco47III AGCGCT 1 cut(s) 528
Eco52I CGGCCG 1 cut(s) 674
Eco53kI GAGCTC 1 cut(s) 201
Eco57I CTGAAG 3 cut(s) 98, 528, 1104
Eco88I CYCGRG 1 cut(s) 1067
EcoICRI GAGCTC 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 1079
EcoT14I CCWWGG 1 cut(s) 863
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 863
FaeI CATG 4 cut(s) 238, 384, 1129, 1149
FaiI YATR 8 cut(s) 221, 236, 382, 597, 717, 738, 1127, 1147
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 770, 802
FaqI GGGAC 1 cut(s) 904
FatI CATG 4 cut(s) 234, 380, 1125, 1145
FauI CCCGC 1 cut(s) 766
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 8 cut(s) 44, 87, 107, 175, 178, 271, 632, 1064
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 8 cut(s) 44, 87, 107, 175, 178, 271, 632, 1064
FspBI CTAG 3 cut(s) 437, 450, 864
GlaI GCGC 2 cut(s) 42, 528
GluI GCNGC 8 cut(s) 44, 87, 107, 175, 178, 271, 632, 1064
GsuI CTGGAG 1 cut(s) 686
HaeII RGCGCY 1 cut(s) 530
HaeIII GGCC 2 cut(s) 89, 676
HapII CCGG 5 cut(s) 50, 83, 274, 673, 893
HgaI GACGC 1 cut(s) 548
HhaI GCGC 2 cut(s) 43, 529
Hin1II CATG 4 cut(s) 238, 384, 1129, 1149
Hin6I GCGC 2 cut(s) 41, 527
HinP1I GCGC 2 cut(s) 41, 527
HinfI GANTC 9 cut(s) 61, 353, 453, 697, 896, 917, 955, 983, 1001
HpaII CCGG 5 cut(s) 50, 83, 274, 673, 893
HphI GGTGA 6 cut(s) 362, 564, 882, 1060, 1084, 1108
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 6 cut(s) 32, 322, 533, 653, 658, 1021
Hpy188III TCNNGA 5 cut(s) 127, 394, 460, 616, 703
Hpy8I GTNNAC 1 cut(s) 126
Hpy99I CGWCG 8 cut(s) 154, 185, 314, 326, 329, 461, 542, 682
HpyAV CCTTC 7 cut(s) 154, 160, 585, 594, 790, 1036, 1045
HpyCH4III ACNGT 4 cut(s) 99, 123, 816, 874
HpyCH4IV ACGT 2 cut(s) 149, 609
HpyCH4V TGCA 4 cut(s) 226, 270, 477, 552
HpyF3I CTNAG 5 cut(s) 202, 523, 743, 963, 1020
HpySE526I ACGT 2 cut(s) 149, 609
Hsp92II CATG 4 cut(s) 238, 384, 1129, 1149
HspAI GCGC 2 cut(s) 41, 527
KroI GCCGGC 1 cut(s) 82
KroNI GCCGGC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 5 cut(s) 32, 514, 612, 653, 750
LguI GCTCTTC 1 cut(s) 677
LmnI GCTCC 2 cut(s) 323, 334
Lsp1109I GCAGC 2 cut(s) 282, 618
LweI GCATC 1 cut(s) 1097
MaeI CTAG 3 cut(s) 437, 450, 864
MaeII ACGT 2 cut(s) 149, 609
MaeIII GTNAC 3 cut(s) 93, 350, 508
MalI GATC 5 cut(s) 34, 516, 614, 655, 752
MbiI CCGCTC 1 cut(s) 1066
MboI GATC 5 cut(s) 32, 514, 612, 653, 750
MboII GAAGA 7 cut(s) 510, 694, 802, 805, 1010, 1111, 1142
MhlI GDGCHC 2 cut(s) 203, 413
MluCI AATT 3 cut(s) 286, 430, 883
MlyI GAGTC 4 cut(s) 347, 926, 964, 1010
MmeI TCCRAC 2 cut(s) 345, 903
MroNI GCCGGC 1 cut(s) 82
MslI CAYNNNNRTG 2 cut(s) 131, 608
MspA1I CMGCKG 2 cut(s) 76, 282
MspI CCGG 5 cut(s) 50, 83, 274, 673, 893
MspR9I CCNGG 2 cut(s) 673, 1081
Mva1269I GAATGC 1 cut(s) 807
MvaI CCWGG 1 cut(s) 1081
MvnI CGCG 1 cut(s) 41
NaeI GCCGGC 1 cut(s) 84
NciI CCSGG 1 cut(s) 673
NdeII GATC 5 cut(s) 32, 514, 612, 653, 750
NgoMIV GCCGGC 1 cut(s) 82
NheI GCTAGC 1 cut(s) 436
NlaIII CATG 4 cut(s) 238, 384, 1129, 1149
NlaIV GGNNCC 2 cut(s) 278, 336
NmeAIII GCCGAG 1 cut(s) 222
NmuCI GTSAC 2 cut(s) 93, 350
NspI RCATGY 1 cut(s) 384
OliI CACNNNNGTG 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 1067
PciSI GCTCTTC 1 cut(s) 677
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 189, 318
PctI GAATGC 1 cut(s) 807
PdiI GCCGGC 1 cut(s) 84
PfeI GAWTC 5 cut(s) 61, 453, 697, 896, 983
PflFI GACNNNGTC 1 cut(s) 916
PkrI GCNGC 8 cut(s) 45, 88, 108, 176, 179, 272, 633, 1065
PleI GAGTC 4 cut(s) 347, 925, 963, 1009
PpsI GAGTC 4 cut(s) 347, 925, 963, 1009
Psp124BI GAGCTC 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 1079
PspGI CCWGG 1 cut(s) 1079
PspN4I GGNNCC 2 cut(s) 278, 336
PspXI VCTCGAGB 1 cut(s) 1067
PsyI GACNNNGTC 1 cut(s) 916
RsaI GTAC 3 cut(s) 602, 833, 961
RsaNI GTAC 3 cut(s) 601, 832, 960
RseI CAYNNNNRTG 2 cut(s) 131, 608
SacI GAGCTC 1 cut(s) 203
SapI GCTCTTC 1 cut(s) 677
SatI GCNGC 8 cut(s) 44, 87, 107, 175, 178, 271, 632, 1064
Sau3AI GATC 5 cut(s) 32, 514, 612, 653, 750
SchI GAGTC 4 cut(s) 347, 926, 964, 1010
ScrFI CCNGG 2 cut(s) 673, 1081
SduI GDGCHC 2 cut(s) 203, 413
SfaNI GCATC 1 cut(s) 1097
SfcI CTRYAG 2 cut(s) 736, 870
Sfr274I CTCGAG 1 cut(s) 1067
SlaI CTCGAG 1 cut(s) 1067
SmiMI CAYNNNNRTG 2 cut(s) 131, 608
SmlI CTYRAG 2 cut(s) 392, 1067
SmoI CTYRAG 2 cut(s) 392, 1067
Sse9I AATT 3 cut(s) 286, 430, 883
SspMI CTAG 3 cut(s) 437, 450, 864
SstI GAGCTC 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 671, 1079
StyI CCWWGG 1 cut(s) 863
TaaI ACNGT 4 cut(s) 99, 123, 816, 874
TaiI ACGT 2 cut(s) 152, 612
TaqI TCGA 4 cut(s) 192, 459, 639, 1068
TaqII GACCGA 1 cut(s) 929
TasI AATT 3 cut(s) 286, 430, 883
TatI WGTACW 2 cut(s) 600, 831
TauI GCSGC 6 cut(s) 46, 89, 109, 177, 180, 1066
TfiI GAWTC 5 cut(s) 61, 453, 697, 896, 983
TseFI GTSAC 2 cut(s) 93, 350
TseI GCWGC 2 cut(s) 270, 631
Tsp45I GTSAC 2 cut(s) 93, 350
TspDTI ATGAA 4 cut(s) 29, 223, 357, 1149
Tth111I GACNNNGTC 1 cut(s) 916
XapI RAATTY 1 cut(s) 430
XceI RCATGY 1 cut(s) 384
XhoI CTCGAG 1 cut(s) 1067
XmaJI CCTAGG 1 cut(s) 863
XspI CTAG 3 cut(s) 437, 450, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.