Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007688

Physical Location & Seq

Genomic Coordinates Reverse (-)

20788103 .. 20788697

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g20270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCCTTTTTCAATGAAAATCCAACCGATTGATTTTCGCACGAGTCCTGAAGACCTGACTCGGTTCGAGCCGGTCAAGCCGGTAGTGGCGAAGTCGCGGCTCAAGCGGCTCTTCGAGCGGCCGTTTACGAACGTACTGAAAAACTCTGCACCGGCAGAGAAGGCCGGCCTCGGAAGCGAGGAGCCGCATTTCAACAAGGACGGCCTCGTCGGAGGCGGCAGCGGAGGATCGGCCGAGTTCGAGCCGAGTTCGATGTGCTTGACGAAGATGGTCCAGAATTTCATCGAGGACAGCACCGAGAAGCAATCATTGGCTGTGGCGCGGTGCAGCCGGAACCGCTGCAACTGCTTCAACGGCAACGACAGTTCGGAAGACGAATCGGAGCTGTTTGGCGGTTTTGGCGACTCCAACGTGGCATCCTCTGCCGAAGCATGCGAGCTTCTCAAGGGTTTGGTTTCGTGCCAGAGCGTGAGCGAGAGGAACTTGCTAGCCGACGCGGCGAAGATCGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDDEXK_6

Protein Analysis

172

Amino Acids

18.55

Weight (kDa)

5.18

Isoelectric Point (pI)

65.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38820 AT2G38820 AT3G54550
fragaria_vesca	FvH4_2g22770
malus_domestica	MD03G1256000.v1.1 MD11G1276600.v1.1
prunus_persica	Prupe.8G233100_v2.0.a1 Prupe.8G233100_v2.0.a1 Prupe.8G233100_v2.0.a1
pyrus_communis	pycom03g20270 pycom11g24480
rosa_chinensis	RchiOBHm_Chr6g0289671
rosa_laevigata	RLG00000012277
rosa_multiflora	Rmu_sc0005640.1_g000039
rosa_roxburghii	Rroxscaffold_7G00177680 Rroxscaffold_7G00178160
rosa_rugosa	Rorug06G0205700 Rorug06G0205700 Rorug06G0205700
rosa_samantha	Rh6AG317400 Rh6BG324800 Rh6CG330500 Rh6DG316000
rosa_wichuraiana	Rw6G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccBSI	CCGCTC	1 cut(s)	118
AccII	CGCG	3 cut(s)	97, 322, 497
AclWI	GGATC	1 cut(s)	235
AcoI	YGGCCR	2 cut(s)	119, 231
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	1 cut(s)	135
AgsI	TTSAA	3 cut(s)	12, 193, 352
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	2 cut(s)	385, 439
AluI	AGCT	2 cut(s)	385, 439
AlwI	GGATC	1 cut(s)	235
AoxI	GGCC	5 cut(s)	119, 162, 166, 202, 231
ApeKI	GCWGC	3 cut(s)	219, 327, 339
ApoI	RAATTY	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	271
AsuNHI	GCTAGC	1 cut(s)	487
AvaII	GGWCC	1 cut(s)	271
BauI	CACGAG	1 cut(s)	40
BbsI	GAAGAC	2 cut(s)	57, 378
BbvI	GCAGC	3 cut(s)	231, 326, 339
BccI	CCATC	1 cut(s)	262
BceAI	ACGGC	3 cut(s)	106, 217, 370
BfaI	CTAG	1 cut(s)	488
BglI	GCCNNNNNGGC	1 cut(s)	497
BisI	GCNGC	9 cut(s)	98, 107, 119, 185, 217, 220, 328, 340, 498
BlsI	GCNGC	9 cut(s)	99, 108, 120, 186, 218, 221, 329, 341, 499
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	2 cut(s)	183, 335
BmsI	GCATC	1 cut(s)	425
BmtI	GCTAGC	1 cut(s)	491
BpiI	GAAGAC	2 cut(s)	57, 378
BpuEI	CTTGAG	2 cut(s)	86, 428
Bsa29I	ATCGAT	2 cut(s)	507, 511
BsaJI	CCNNGG	1 cut(s)	169
Bse118I	RCCGGY	4 cut(s)	70, 79, 151, 164
BseCI	ATCGAT	2 cut(s)	507, 511
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	416
BseRI	GAGGAG	1 cut(s)	194
BseX3I	CGGCCG	2 cut(s)	119, 231
BseXI	GCAGC	3 cut(s)	231, 326, 339
BsgI	GTGCAG	2 cut(s)	132, 346
Bsh1236I	CGCG	3 cut(s)	97, 322, 497
Bsh1285I	CGRYCG	3 cut(s)	122, 234, 511
BshFI	GGCC	5 cut(s)	121, 164, 168, 204, 233
BshVI	ATCGAT	2 cut(s)	507, 511
BsiEI	CGRYCG	3 cut(s)	122, 234, 511
BsiSI	CCGG	5 cut(s)	71, 80, 152, 165, 331
BsnI	GGCC	5 cut(s)	121, 164, 168, 204, 233
Bsp143I	GATC	3 cut(s)	227, 504, 508
BspANI	GGCC	5 cut(s)	121, 164, 168, 204, 233
BspDI	ATCGAT	2 cut(s)	507, 511
BspFNI	CGCG	3 cut(s)	97, 322, 497
BspLI	GGNNCC	2 cut(s)	183, 335
BspOI	GCTAGC	1 cut(s)	491
BspPI	GGATC	1 cut(s)	235
BspQI	GCTCTTC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	118
BsrFI	RCCGGY	4 cut(s)	70, 79, 151, 164
BssAI	RCCGGY	4 cut(s)	70, 79, 151, 164
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	3 cut(s)	227, 504, 508
BssSI	CACGAG	1 cut(s)	40
Bst2BI	CACGAG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	365
Bst6I	CTCTTC	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	4 cut(s)	166, 433, 437, 489
BstF5I	GGATG	1 cut(s)	416
BstFNI	CGCG	3 cut(s)	97, 322, 497
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	3 cut(s)	230, 507, 511
BstMBI	GATC	3 cut(s)	227, 504, 508
BstMCI	CGRYCG	3 cut(s)	122, 234, 511
BstNSI	RCATGY	1 cut(s)	435
BstUI	CGCG	3 cut(s)	97, 322, 497
BstV1I	GCAGC	3 cut(s)	231, 326, 339
BstV2I	GAAGAC	2 cut(s)	57, 378
BstZI	CGGCCG	2 cut(s)	119, 231
Bsu15I	ATCGAT	2 cut(s)	507, 511
BsuRI	GGCC	5 cut(s)	121, 164, 168, 204, 233
BsuTUI	ATCGAT	2 cut(s)	507, 511
BtsCI	GGATG	1 cut(s)	416
Cac8I	GCNNGC	4 cut(s)	166, 433, 437, 489
CfoI	GCGC	1 cut(s)	322
Cfr10I	RCCGGY	4 cut(s)	70, 79, 151, 164
Cfr13I	GGNCC	1 cut(s)	271
ClaI	ATCGAT	2 cut(s)	507, 511
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	1 cut(s)	432
CviQI	GTAC	1 cut(s)	134
DpnI	GATC	3 cut(s)	229, 506, 510
DpnII	GATC	3 cut(s)	227, 504, 508
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	2 cut(s)	119, 231
EagI	CGGCCG	2 cut(s)	119, 231
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EclXI	CGGCCG	2 cut(s)	119, 231
Eco47I	GGWCC	1 cut(s)	271
Eco52I	CGGCCG	2 cut(s)	119, 231
Eco57I	CTGAAG	1 cut(s)	69
FaeI	CATG	1 cut(s)	435
FaiI	YATR	1 cut(s)	433
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	1 cut(s)	431
Fnu4HI	GCNGC	9 cut(s)	98, 107, 119, 185, 217, 220, 328, 340, 498
FokI	GGATG	1 cut(s)	403
FseI	GGCCGGCC	1 cut(s)	168
Fsp4HI	GCNGC	9 cut(s)	98, 107, 119, 185, 217, 220, 328, 340, 498
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	9 cut(s)	98, 107, 119, 185, 217, 220, 328, 340, 498
HaeIII	GGCC	5 cut(s)	121, 164, 168, 204, 233
HapII	CCGG	5 cut(s)	71, 80, 152, 165, 331
HgaI	GACGC	1 cut(s)	503
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	1 cut(s)	435
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HinfI	GANTC	4 cut(s)	43, 58, 377, 404
HpaII	CCGG	5 cut(s)	71, 80, 152, 165, 331
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	4 cut(s)	173, 212, 370, 382
Hpy188III	TCNNGA	2 cut(s)	47, 274
Hpy8I	GTNNAC	1 cut(s)	126
Hpy99I	CGWCG	2 cut(s)	212, 497
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4IV	ACGT	2 cut(s)	132, 411
HpyCH4V	TGCA	3 cut(s)	149, 327, 342
HpySE526I	ACGT	2 cut(s)	132, 411
Hsp92II	CATG	1 cut(s)	435
HspAI	GCGC	1 cut(s)	320
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	227, 504, 508
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	2 cut(s)	181, 382
LpnPI	CCDG	9 cut(s)	60, 68, 84, 93, 165, 178, 287, 344, 476
Lsp1109I	GCAGC	3 cut(s)	231, 326, 339
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	2 cut(s)	132, 411
MalI	GATC	3 cut(s)	229, 506, 510
MbiI	CCGCTC	1 cut(s)	118
MboI	GATC	3 cut(s)	227, 504, 508
MboII	GAAGA	5 cut(s)	62, 103, 277, 383, 514
MluCI	AATT	1 cut(s)	277
MlyI	GAGTC	3 cut(s)	52, 52, 398
MmeI	TCCRAC	3 cut(s)	46, 190, 432
MnlI	CCTC	8 cut(s)	172, 179, 206, 215, 218, 280, 430, 471
MroNI	GCCGGC	1 cut(s)	164
MspA1I	CMGCKG	2 cut(s)	222, 339
MspI	CCGG	5 cut(s)	71, 80, 152, 165, 331
MvnI	CGCG	3 cut(s)	97, 322, 497
NaeI	GCCGGC	1 cut(s)	166
NdeII	GATC	3 cut(s)	227, 504, 508
NgoMIV	GCCGGC	1 cut(s)	164
NheI	GCTAGC	1 cut(s)	487
NlaIII	CATG	1 cut(s)	435
NlaIV	GGNNCC	2 cut(s)	183, 335
NmeAIII	GCCGAG	2 cut(s)	259, 270
NspI	RCATGY	1 cut(s)	435
PaeI	GCATGC	1 cut(s)	435
PciSI	GCTCTTC	1 cut(s)	116
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	9 cut(s)	99, 108, 120, 186, 218, 221, 329, 341, 499
Ple19I	CGATCG	1 cut(s)	511
PleI	GAGTC	3 cut(s)	51, 52, 398
PpsI	GAGTC	3 cut(s)	51, 52, 398
PspN4I	GGNNCC	2 cut(s)	183, 335
PspPI	GGNCC	1 cut(s)	271
PvuI	CGATCG	1 cut(s)	511
RigI	GGCCGGCC	1 cut(s)	168
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SapI	GCTCTTC	1 cut(s)	116
SatI	GCNGC	9 cut(s)	98, 107, 119, 185, 217, 220, 328, 340, 498
Sau3AI	GATC	3 cut(s)	227, 504, 508
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	3 cut(s)	52, 52, 398
SetI	ASST	5 cut(s)	57, 135, 387, 414, 441
SfaNI	GCATC	1 cut(s)	425
SinI	GGWCC	1 cut(s)	271
SmlI	CTYRAG	2 cut(s)	101, 443
SmoI	CTYRAG	2 cut(s)	101, 443
SphI	GCATGC	1 cut(s)	435
Sse9I	AATT	1 cut(s)	277
SspMI	CTAG	1 cut(s)	488
TaaI	ACNGT	1 cut(s)	365
TaiI	ACGT	2 cut(s)	135, 414
TaqI	TCGA	7 cut(s)	66, 114, 240, 251, 285, 507, 511
TasI	AATT	1 cut(s)	277
TauI	GCSGC	6 cut(s)	100, 109, 121, 187, 219, 500
TfiI	GAWTC	1 cut(s)	377
TseI	GCWGC	3 cut(s)	219, 327, 339
TspDTI	ATGAA	2 cut(s)	29, 271
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	1 cut(s)	435
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.