Rmu_sc0005640.1_g000039

PDDEXK-like family of unknown function

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005640.1
Physical Location & Seq
Forward (+)
178710 .. 180104
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005640.1_g000039.1.cds

Sequence Viewer

Length: 1194 bp
atgaaaatacagccgattgagtcacacgcggggcctgtggaagcggagactaggttcgaaccggtgaagccggtggccaagtcacggttcaagaggctattcgagcgacagttcacgagcgtattgagaacaacgacgcctgcagcggcggtggcggcggaggagaaggtcgtcgtctgcggcgtcgaggagctgcatttcaacaaagacggcttcacggacttggccggcggcgagttcgagccgagctcagtctgcttggcgaatatggtgcagaacttcatcgaagagagcaacgagaagcaatcgtcggccaggtgcagccggaaccgctgtaactgcttcaacggaaactgcgacgacagctccgacgacgaatcggagcctttcggtttcggcgattccaatctggcttcatccggcgaagcatgtgagcttctcaagagtttggtgtcgtgcccgagtctatgtgaaaggaatttgctagcggacacagctagaatcgtcgagaaaaacaagatgtgcaagcgtaaagacgacaatggcagactggttgtttctgataatctgttagctctcggatacgacgcttcagtctgcaaaactcgttgggaaaaatccccttcctatccttccggggagtacgagtacattgacgtgatcgtaaatggggagaggctgctaatcgacgtggatttccgatcggagtttgagattgctcgaccgacgaagagctacaaggcgattttgcaggctcttccttatattttcgttgggaagcccgatcggctgaggaggatcatcggaattgtttcggaggcggcgaagcagagcctgaagaagaagggaatgcacattcctccgtggaggaaagcagagtacatcaaagccaagtggctctctcctcacacccgcgccatagtctctgttaattcctcaccggtttccttgcccgaaaagaccaagacccagtctttgatcaagtccatggagtttgaacagagtcgtaccgagttggcaaagtcggtggactcttctgagccggaggagtcggtttttgagttttctgagggcgaagaggagaaggcggtggtgaaggagtggaagccgccggaggtgaagcccaggagatcatcaggggtgaagattgtgactggtttggcttcagtcatggaagatgaaaatgagccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

397

Amino Acids

44.32

Weight (kDa)

5.63

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 593
AccII CGCG 2 cut(s) 29, 915
AclWI GGATC 1 cut(s) 806
AcoI YGGCCR 3 cut(s) 75, 225, 312
AcsI RAATTY 1 cut(s) 478
AcuI CTGAAG 3 cut(s) 576, 857, 1149
AcyI GRCGYC 2 cut(s) 137, 183
AfaI GTAC 4 cut(s) 644, 650, 881, 1009
AfiI CCNNNNNNNGG 1 cut(s) 84
AgeI ACCGGT 2 cut(s) 61, 940
AgsI TTSAA 4 cut(s) 91, 202, 346, 998
AjiI CACGTC 2 cut(s) 658, 691
AjnI CCWGG 2 cut(s) 314, 1124
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AloI GAACNNNNNNTCC 2 cut(s) 38, 70
AluBI AGCT 7 cut(s) 193, 249, 366, 436, 497, 575, 735
AluI AGCT 7 cut(s) 193, 249, 366, 436, 497, 575, 735
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 2 cut(s) 41, 928
AlwI GGATC 1 cut(s) 806
AlwNI CAGNNNCTG 1 cut(s) 835
Ama87I CYCGRG 1 cut(s) 460
AoxI GGCC 4 cut(s) 32, 75, 225, 312
ApeKI GCWGC 4 cut(s) 143, 193, 321, 679
ApoI RAATTY 1 cut(s) 478
ArsI GACNNNNNNTTYG 2 cut(s) 958, 990
AsiGI ACCGGT 2 cut(s) 61, 940
Asp700I GAANNNNTTC 1 cut(s) 811
AspLEI GCGC 1 cut(s) 917
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 637
AsuHPI GGTGA 5 cut(s) 76, 930, 1105, 1129, 1153
AsuII TTCGAA 1 cut(s) 57
AsuNHI GCTAGC 1 cut(s) 484
AvaI CYCGRG 1 cut(s) 460
BaeGI GKGCMC 1 cut(s) 461
BalI TGGCCA 1 cut(s) 77
BanII GRGCYC 1 cut(s) 251
BauI CACGAG 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 251
BbvCI CCTCAGC 1 cut(s) 791
BbvI GCAGC 4 cut(s) 155, 180, 333, 666
BceAI ACGGC 1 cut(s) 226
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BciT130I CCWGG 2 cut(s) 316, 1126
BciVI GTATCC 1 cut(s) 575
BclI TGATCA 1 cut(s) 978
BcnI CCSGG 1 cut(s) 637
BcoDI GTCTC 2 cut(s) 41, 928
BfaI CTAG 3 cut(s) 51, 485, 498
BfmI CTRYAG 1 cut(s) 141
BfuI GTATCC 1 cut(s) 575
BglI GCCNNNNNGGC 1 cut(s) 787
Bme1390I CCNGG 3 cut(s) 316, 637, 1126
BmeT110I CYCGRG 1 cut(s) 460
BmgBI CACGTC 2 cut(s) 658, 691
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 3 cut(s) 33, 329, 384
BmrFI CCNGG 3 cut(s) 316, 637, 1126
BmrI ACTGGG 1 cut(s) 964
BmtI GCTAGC 1 cut(s) 488
BmuI ACTGGG 1 cut(s) 964
BplI GAGNNNNNCTC 2 cut(s) 233, 265
Bpu10I CCTNAGC 1 cut(s) 791
Bpu14I TTCGAA 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 425
BpuMI CCSGG 1 cut(s) 637
BsaBI GATNNNNATC 1 cut(s) 405
BsaHI GRCGYC 2 cut(s) 137, 183
BsaJI CCNNGG 4 cut(s) 636, 863, 987, 1124
BsaWI WCCGGW 2 cut(s) 61, 940
BsaXI ACNNNNNCTCC 6 cut(s) 38, 68, 350, 380, 632, 662
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse118I RCCGGY 4 cut(s) 61, 70, 227, 940
Bse1I ACTGG 3 cut(s) 555, 970, 1159
Bse8I GATNNNNATC 1 cut(s) 405
BseBI CCWGG 2 cut(s) 316, 1126
BseDI CCNNGG 4 cut(s) 636, 863, 987, 1124
BseGI GGATG 1 cut(s) 416
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMII CTCAG 4 cut(s) 264, 782, 1029, 1059
BseNI ACTGG 3 cut(s) 555, 970, 1159
BseRI GAGGAG 6 cut(s) 176, 203, 808, 894, 1061, 1094
BseSI GKGCMC 1 cut(s) 461
BseXI GCAGC 4 cut(s) 155, 180, 333, 666
BsgI GTGCAG 2 cut(s) 293, 340
Bsh1236I CGCG 2 cut(s) 29, 915
Bsh1285I CGRYCG 3 cut(s) 704, 725, 787
BshFI GGCC 4 cut(s) 34, 77, 227, 314
BshTI ACCGGT 2 cut(s) 61, 940
BsiEI CGRYCG 3 cut(s) 704, 725, 787
BsiHKAI GWGCWC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 460
BsiSI CCGG 9 cut(s) 62, 71, 228, 325, 420, 636, 941, 1043, 1112
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 2 cut(s) 41, 928
BsmI GAATGC 1 cut(s) 855
BsnI GGCC 4 cut(s) 34, 77, 227, 314
BsoBI CYCGRG 1 cut(s) 460
Bsp119I TTCGAA 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 251, 461
Bsp143I GATC 6 cut(s) 660, 701, 784, 798, 978, 1130
Bsp19I CCATGG 1 cut(s) 987
BspANI GGCC 4 cut(s) 34, 77, 227, 314
BspCNI CTCAG 4 cut(s) 263, 783, 1030, 1060
BspFNI CGCG 2 cut(s) 29, 915
BspLI GGNNCC 3 cut(s) 33, 329, 384
BspMAI CTGCAG 1 cut(s) 145
BspOI GCTAGC 1 cut(s) 488
BspPI GGATC 1 cut(s) 806
BspQI GCTCTTC 2 cut(s) 725, 762
BspT104I TTCGAA 1 cut(s) 57
BsrFI RCCGGY 4 cut(s) 61, 70, 227, 940
BsrI ACTGG 3 cut(s) 555, 970, 1159
BssAI RCCGGY 4 cut(s) 61, 70, 227, 940
BssECI CCNNGG 4 cut(s) 636, 863, 987, 1124
BssMI GATC 6 cut(s) 660, 701, 784, 798, 978, 1130
BssNI GRCGYC 2 cut(s) 137, 183
BssSI CACGAG 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 987
Bst2BI CACGAG 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 316, 1126
Bst4CI ACNGT 2 cut(s) 87, 111
Bst6I CTCTTC 5 cut(s) 282, 725, 762, 1039, 1071
BstACI GRCGYC 2 cut(s) 137, 183
BstBI TTCGAA 1 cut(s) 57
BstC8I GCNNGC 5 cut(s) 141, 229, 486, 527, 753
BstDEI CTNAG 4 cut(s) 250, 791, 1038, 1068
BstDSI CCRYGG 2 cut(s) 863, 987
BstF5I GGATG 1 cut(s) 416
BstFNI CGCG 2 cut(s) 29, 915
BstHHI GCGC 1 cut(s) 917
BstKTI GATC 6 cut(s) 663, 704, 787, 801, 981, 1133
BstMAI GTCTC 2 cut(s) 41, 928
BstMBI GATC 6 cut(s) 660, 701, 784, 798, 978, 1130
BstMCI CGRYCG 3 cut(s) 704, 725, 787
BstMWI GCNNNNNNNGC 9 cut(s) 103, 152, 155, 255, 330, 339, 363, 494, 787
BstNI CCWGG 2 cut(s) 316, 1126
BstNSI RCATGY 1 cut(s) 432
BstSCI CCNGG 3 cut(s) 314, 635, 1124
BstSFI CTRYAG 1 cut(s) 141
BstSLI GKGCMC 1 cut(s) 461
BstUI CGCG 2 cut(s) 29, 915
BstV1I GCAGC 4 cut(s) 155, 180, 333, 666
BsuI GTATCC 1 cut(s) 575
BsuRI GGCC 4 cut(s) 34, 77, 227, 314
BtgI CCRYGG 2 cut(s) 863, 987
BtrI CACGTC 2 cut(s) 658, 691
BtsCI GGATG 1 cut(s) 416
Cac8I GCNNGC 5 cut(s) 141, 229, 486, 527, 753
CaiI CAGNNNCTG 1 cut(s) 835
CfoI GCGC 1 cut(s) 917
Cfr10I RCCGGY 4 cut(s) 61, 70, 227, 940
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 3 cut(s) 145, 172, 596
Csp6I GTAC 4 cut(s) 643, 649, 880, 1008
CspAI ACCGGT 2 cut(s) 61, 940
CspCI CAANNNNNGTGG 2 cut(s) 1008, 1043
CviAII CATG 4 cut(s) 429, 988, 1171, 1191
CviQI GTAC 4 cut(s) 643, 649, 880, 1008
DdeI CTNAG 4 cut(s) 250, 791, 1038, 1068
DpnI GATC 6 cut(s) 662, 703, 786, 800, 980, 1132
DpnII GATC 6 cut(s) 660, 701, 784, 798, 978, 1130
DrdI GACNNNNNNGTC 1 cut(s) 593
DseDI GACNNNNNNGTC 1 cut(s) 593
EaeI YGGCCR 3 cut(s) 75, 225, 312
Eam1104I CTCTTC 5 cut(s) 282, 725, 762, 1039, 1071
EarI CTCTTC 5 cut(s) 282, 725, 762, 1039, 1071
EciI GGCGGA 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 987
Eco24I GRGCYC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 249
Eco57I CTGAAG 3 cut(s) 576, 857, 1149
Eco88I CYCGRG 1 cut(s) 460
EcoICRI GAGCTC 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 32
EcoRII CCWGG 2 cut(s) 314, 1124
EcoT14I CCWWGG 1 cut(s) 987
EcoT38I GRGCYC 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 987
FaeI CATG 4 cut(s) 432, 991, 1174, 1194
FaiI YATR 8 cut(s) 269, 430, 469, 765, 920, 989, 1172, 1192
FatI CATG 4 cut(s) 428, 987, 1170, 1190
FauI CCCGC 2 cut(s) 22, 920
FbaI TGATCA 1 cut(s) 978
FokI GGATG 1 cut(s) 403
FriOI GRGCYC 1 cut(s) 251
FspBI CTAG 3 cut(s) 51, 485, 498
GlaI GCGC 1 cut(s) 916
HaeIII GGCC 4 cut(s) 34, 77, 227, 314
HapII CCGG 9 cut(s) 62, 71, 228, 325, 420, 636, 941, 1043, 1112
HgaI GACGC 3 cut(s) 145, 172, 596
HhaI GCGC 1 cut(s) 917
Hin1I GRCGYC 2 cut(s) 137, 183
Hin1II CATG 4 cut(s) 432, 991, 1174, 1194
Hin6I GCGC 1 cut(s) 915
HinP1I GCGC 1 cut(s) 915
HinfI GANTC 8 cut(s) 20, 377, 401, 463, 501, 1003, 1031, 1049
HpaII CCGG 9 cut(s) 62, 71, 228, 325, 420, 636, 941, 1043, 1112
HphI GGTGA 5 cut(s) 76, 930, 1105, 1129, 1153
Hpy166II GTNNAC 2 cut(s) 114, 1030
Hpy188III TCNNGA 4 cut(s) 91, 115, 442, 508
Hpy8I GTNNAC 2 cut(s) 114, 1030
HpyAV CCTTC 6 cut(s) 160, 633, 642, 838, 1078, 1090
HpyCH4III ACNGT 2 cut(s) 87, 111
HpyCH4IV ACGT 2 cut(s) 657, 690
HpyCH4V TGCA 8 cut(s) 143, 196, 274, 321, 525, 600, 751, 853
HpyF10VI GCNNNNNNNGC 9 cut(s) 103, 152, 155, 255, 330, 339, 363, 494, 787
HpyF3I CTNAG 4 cut(s) 250, 791, 1038, 1068
HpySE526I ACGT 2 cut(s) 657, 690
Hsp92I GRCGYC 2 cut(s) 137, 183
Hsp92II CATG 4 cut(s) 432, 991, 1174, 1194
HspAI GCGC 1 cut(s) 915
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 978
Kzo9I GATC 6 cut(s) 660, 701, 784, 798, 978, 1130
LguI GCTCTTC 2 cut(s) 725, 762
LmnI GCTCC 3 cut(s) 190, 371, 382
Lsp1109I GCAGC 4 cut(s) 155, 180, 333, 666
MaeI CTAG 3 cut(s) 51, 485, 498
MaeII ACGT 2 cut(s) 657, 690
MaeIII GTNAC 4 cut(s) 21, 81, 335, 1150
MalI GATC 6 cut(s) 662, 703, 786, 800, 980, 1132
MboI GATC 6 cut(s) 660, 701, 784, 798, 978, 1130
MboII GAAGA 9 cut(s) 299, 742, 749, 850, 853, 1026, 1088, 1156, 1187
MhlI GDGCHC 2 cut(s) 251, 461
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 3 cut(s) 478, 807, 931
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 5 cut(s) 29, 472, 1012, 1025, 1058
MmeI TCCRAC 1 cut(s) 393
Mox20I TGGCCA 1 cut(s) 77
MroNI GCCGGC 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 811
MscI TGGCCA 1 cut(s) 77
MseI TTAA 1 cut(s) 930
MslI CAYNNNNRTG 1 cut(s) 656
Msp20I TGGCCA 1 cut(s) 77
MspA1I CMGCKG 2 cut(s) 146, 333
MspI CCGG 9 cut(s) 62, 71, 228, 325, 420, 636, 941, 1043, 1112
MspR9I CCNGG 3 cut(s) 316, 637, 1126
Mva1269I GAATGC 1 cut(s) 855
MvaI CCWGG 2 cut(s) 316, 1126
MvnI CGCG 2 cut(s) 29, 915
MwoI GCNNNNNNNGC 9 cut(s) 103, 152, 155, 255, 330, 339, 363, 494, 787
NaeI GCCGGC 1 cut(s) 229
NciI CCSGG 1 cut(s) 637
NcoI CCATGG 1 cut(s) 987
NdeII GATC 6 cut(s) 660, 701, 784, 798, 978, 1130
NgoMIV GCCGGC 1 cut(s) 227
NheI GCTAGC 1 cut(s) 484
NlaIII CATG 4 cut(s) 432, 991, 1174, 1194
NlaIV GGNNCC 3 cut(s) 33, 329, 384
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 3 cut(s) 21, 81, 1150
NspI RCATGY 1 cut(s) 432
NspV TTCGAA 1 cut(s) 57
PciSI GCTCTTC 2 cut(s) 725, 762
PcsI WCGNNNNNNNCGW 5 cut(s) 180, 354, 366, 396, 821
PctI GAATGC 1 cut(s) 855
PdiI GCCGGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 811
PfeI GAWTC 3 cut(s) 377, 401, 501
PflFI GACNNNGTC 1 cut(s) 970
PinAI ACCGGT 2 cut(s) 61, 940
Ple19I CGATCG 2 cut(s) 704, 787
PleI GAGTC 5 cut(s) 28, 471, 1011, 1025, 1057
PpsI GAGTC 5 cut(s) 28, 471, 1011, 1025, 1057
Psp124BI GAGCTC 1 cut(s) 251
Psp6I CCWGG 2 cut(s) 314, 1124
PspGI CCWGG 2 cut(s) 314, 1124
PspN4I GGNNCC 3 cut(s) 33, 329, 384
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 835
PsyI GACNNNGTC 1 cut(s) 970
PvuI CGATCG 2 cut(s) 704, 787
RsaI GTAC 4 cut(s) 644, 650, 881, 1009
RsaNI GTAC 4 cut(s) 643, 649, 880, 1008
RseI CAYNNNNRTG 1 cut(s) 656
SacI GAGCTC 1 cut(s) 251
SapI GCTCTTC 2 cut(s) 725, 762
SaqAI TTAA 1 cut(s) 930
Sau3AI GATC 6 cut(s) 660, 701, 784, 798, 978, 1130
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 5 cut(s) 29, 472, 1012, 1025, 1058
ScrFI CCNGG 3 cut(s) 316, 637, 1126
SduI GDGCHC 2 cut(s) 251, 461
SfcI CTRYAG 1 cut(s) 141
SfuI TTCGAA 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 656
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 3 cut(s) 478, 807, 931
SspMI CTAG 3 cut(s) 51, 485, 498
SstI GAGCTC 1 cut(s) 251
StyD4I CCNGG 3 cut(s) 314, 635, 1124
StyI CCWWGG 1 cut(s) 987
TaaI ACNGT 2 cut(s) 87, 111
TaiI ACGT 2 cut(s) 660, 693
TaqI TCGA 8 cut(s) 57, 102, 186, 240, 285, 507, 687, 721
TaqII GACCGA 1 cut(s) 739
TasI AATT 3 cut(s) 478, 807, 931
TatI WGTACW 2 cut(s) 648, 879
TauI GCSGC 6 cut(s) 149, 158, 183, 234, 824, 1111
TfiI GAWTC 3 cut(s) 377, 401, 501
Tru1I TTAA 1 cut(s) 930
Tru9I TTAA 1 cut(s) 930
TseFI GTSAC 3 cut(s) 21, 81, 1150
TseI GCWGC 4 cut(s) 143, 193, 321, 679
Tsp45I GTSAC 3 cut(s) 21, 81, 1150
TspDTI ATGAA 4 cut(s) 17, 271, 405, 1194
TspGWI ACGGA 3 cut(s) 233, 363, 852
Tth111I GACNNNGTC 1 cut(s) 970
XapI RAATTY 1 cut(s) 478
XceI RCATGY 1 cut(s) 432
XmnI GAANNNNTTC 1 cut(s) 811
XspI CTAG 3 cut(s) 51, 485, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.