MD11G1276600.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0007688
Physical Location & Seq
Reverse (-)
39378176 .. 39380510
2335 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1276600.v1.1.491

Sequence Viewer

Length: 1185 bp
ATGCCTTTTCCAATGAAAATCCAACCGATCGATTTTCGCACGAGTCCTGAAGACCTGACTCCGTTCGAGCCGGTCAAGCCGGTGGCGGCGAAGTCGCGGCTCAAGCGGCTGTTCGAGCGGCCGTTCACGAACGTATTGAAAAGCTCAGCGGCGACGGAGAAGGCCAGCAGCGGAATCGGAATCGAAGAGCCGCATTTCAACAAAGACGGCTGCGGCGGAGGATCGGCCGAGTTCGAGCCGAGCTCCATGTGCTTGACGAAGATGGTTCAGAATTTCATCGAGGAGAGCAACGAGAAGCAATCTTCGACTGCGGCGCGGTGCAGCCGGAACCGCTGCAACTGCTTCAACGGAAACTGCAACGACAGTTCGGAAGACGAATCGGAGCTGTTTGGCGGTTTCGGCGACTCCAACGTGACGTCCTCTGCCGAATCATGTGAGCTTCTCAAGGGTTTGGTTTCGTGCCAGAGCGTGAGCGAGAGGAACCTGCTAGCCGACACGGCGAAGATCGTTGAGAAAAACAAGGCCTGCTGCAAGCAGAAAGACGACACCTGCAGAACCGTCGTTTCTGATAGTCTGTTAGCTCTCGGATACGACGCGTCGGTCTGCAAATCTCGTTGGGAGAAAGCTCCGTCCTATCCCGCCGGAGAATATGATTACATTGACGTGATCGTCAAAGGAGAGAGACTGCTGATCGACGTCGATTTCAGATCGGAATTCGAGATCGCACGGCCGACGAAGAGCTACAAGGCGATTCTCCAGACGCTTCCATACATTTTCGTCGGGAAGCACGACCGGCTGTGGCGGATCATCGCGGTGGTGTCGGAGGCGGCGAAGCAGAGCTTGAAGAAGAAGGGGATGCCAGTTCCGCCGTGGAGAAAAGCCGAGTACATCAGGGCCAAGTGGCTGTCTCCTCACACTAGAGCCACACCGGCCCCTTCCGATTCGACTCAGCCACCGATCGGGTCAGGCGAGTCGGAACTGAGTCTGGGCGGGACAAACTCGGTTGAGGATGGTGAGTTGGGCGACGCGCCGGTGTTTGAGTTGTCGGCGAGTTCCGGTGAGGAAGAGAAGGCGATGGCGGCGGCGAAGGAATGGAATCCGCCGGAGCTGAAGCCCAAGAGATCGACGGTGACCGGTGTAAAGATCGTGACCGGTTTGGCTTCTGTTATAGAATATGAACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

395

Amino Acids

43.1

Weight (kDa)

5.61

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 87 - 307 1.7e-76 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 557
AasI GACNNNNNNGTC 2 cut(s) 599, 668
AatII GACGTC 2 cut(s) 419, 699
Acc36I ACCTGC 2 cut(s) 492, 557
AccBSI CCGCTC 1 cut(s) 118
AccII CGCG 5 cut(s) 97, 316, 596, 812, 1028
AclWI GGATC 2 cut(s) 229, 812
AcoI YGGCCR 3 cut(s) 119, 225, 728
AcsI RAATTY 2 cut(s) 271, 713
AcuI CTGAAG 2 cut(s) 69, 1130
AcyI GRCGYC 2 cut(s) 416, 696
AfaI GTAC 1 cut(s) 887
AfiI CCNNNNNNNGG 1 cut(s) 959
AflIII ACRYGT 1 cut(s) 594
AgeI ACCGGT 2 cut(s) 1133, 1151
AgsI TTSAA 4 cut(s) 139, 199, 346, 844
AjiI CACGTC 1 cut(s) 664
AluBI AGCT 9 cut(s) 144, 243, 385, 439, 581, 626, 741, 840, 1108
AluI AGCT 9 cut(s) 144, 243, 385, 439, 581, 626, 741, 840, 1108
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 2 cut(s) 676, 912
AlwI GGATC 2 cut(s) 229, 812
AoxI GGCC 7 cut(s) 119, 162, 225, 522, 728, 894, 930
ApeKI GCWGC 5 cut(s) 168, 210, 321, 333, 528
ApoI RAATTY 2 cut(s) 271, 713
AsiGI ACCGGT 2 cut(s) 1133, 1151
AspLEI GCGC 2 cut(s) 316, 1030
AspS9I GGNCC 2 cut(s) 894, 931
AsuHPI GGTGA 3 cut(s) 1025, 1070, 1141
AsuNHI GCTAGC 1 cut(s) 487
BanII GRGCYC 1 cut(s) 245
BauI CACGAG 1 cut(s) 40
BbsI GAAGAC 2 cut(s) 57, 378
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 5 cut(s) 180, 197, 320, 333, 515
BccI CCATC 3 cut(s) 256, 1004, 1069
BceAI ACGGC 5 cut(s) 106, 223, 513, 743, 853
BcgI CGANNNNNNTGC 4 cut(s) 157, 191, 541, 575
BciVI GTATCC 1 cut(s) 581
BcoDI GTCTC 2 cut(s) 676, 912
BfaI CTAG 2 cut(s) 488, 918
BfmI CTRYAG 1 cut(s) 550
BfuAI ACCTGC 2 cut(s) 492, 557
BfuI GTATCC 1 cut(s) 581
BglI GCCNNNNNGGC 2 cut(s) 497, 929
BlpI GCTNAGC 1 cut(s) 145
BmgBI CACGTC 1 cut(s) 664
BmgT120I GGNCC 2 cut(s) 894, 931
BmiI GGNNCC 3 cut(s) 329, 482, 933
BmsI GCATC 1 cut(s) 846
BmtI GCTAGC 1 cut(s) 491
BpiI GAAGAC 2 cut(s) 57, 378
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpmI CTGGAG 1 cut(s) 740
Bpu1102I GCTNAGC 1 cut(s) 145
BpuEI CTTGAG 2 cut(s) 86, 428
Bsa29I ATCGAT 1 cut(s) 30
BsaHI GRCGYC 2 cut(s) 416, 696
BsaJI CCNNGG 1 cut(s) 869
BsaWI WCCGGW 3 cut(s) 1055, 1133, 1151
Bsc4I CCNNNNNNNGG 1 cut(s) 959
Bse118I RCCGGY 7 cut(s) 70, 79, 792, 928, 1030, 1133, 1151
Bse1I ACTGG 1 cut(s) 860
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 869
BseGI GGATG 2 cut(s) 861, 1015
BseLI CCNNNNNNNGG 1 cut(s) 959
BseMII CTCAG 3 cut(s) 159, 962, 971
BseNI ACTGG 1 cut(s) 860
BseRI GAGGAG 2 cut(s) 296, 900
BseX3I CGGCCG 3 cut(s) 119, 225, 728
BseXI GCAGC 5 cut(s) 180, 197, 320, 333, 515
BsgI GTGCAG 1 cut(s) 340
Bsh1236I CGCG 5 cut(s) 97, 316, 596, 812, 1028
Bsh1285I CGRYCG 6 cut(s) 30, 122, 228, 731, 793, 960
BshFI GGCC 7 cut(s) 121, 164, 227, 524, 730, 896, 932
BshTI ACCGGT 2 cut(s) 1133, 1151
BshVI ATCGAT 1 cut(s) 30
BsiEI CGRYCG 6 cut(s) 30, 122, 228, 731, 793, 960
BsiHKAI GWGCWC 1 cut(s) 245
BslFI GGGAC 1 cut(s) 1006
BslI CCNNNNNNNGG 1 cut(s) 959
BsmAI GTCTC 2 cut(s) 676, 912
BsmFI GGGAC 1 cut(s) 1006
BsnI GGCC 7 cut(s) 121, 164, 227, 524, 730, 896, 932
Bsp1286I GDGCHC 1 cut(s) 245
Bsp1720I GCTNAGC 1 cut(s) 145
BspANI GGCC 7 cut(s) 121, 164, 227, 524, 730, 896, 932
BspCNI CTCAG 3 cut(s) 158, 961, 972
BspDI ATCGAT 1 cut(s) 30
BspFNI CGCG 5 cut(s) 97, 316, 596, 812, 1028
BspLI GGNNCC 3 cut(s) 329, 482, 933
BspMAI CTGCAG 1 cut(s) 554
BspMI ACCTGC 2 cut(s) 492, 557
BspOI GCTAGC 1 cut(s) 491
BspPI GGATC 2 cut(s) 229, 812
BspQI GCTCTTC 2 cut(s) 180, 731
BsrBI CCGCTC 1 cut(s) 118
BsrFI RCCGGY 7 cut(s) 70, 79, 792, 928, 1030, 1133, 1151
BsrI ACTGG 1 cut(s) 860
BssAI RCCGGY 7 cut(s) 70, 79, 792, 928, 1030, 1133, 1151
BssECI CCNNGG 1 cut(s) 869
BssNI GRCGYC 2 cut(s) 416, 696
BssSI CACGAG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 40
Bst4CI ACNGT 4 cut(s) 365, 559, 1129, 1182
Bst6I CTCTTC 3 cut(s) 180, 731, 1059
BstACI GRCGYC 2 cut(s) 416, 696
BstC8I GCNNGC 4 cut(s) 166, 489, 526, 533
BstDEI CTNAG 3 cut(s) 145, 948, 980
BstDSI CCRYGG 1 cut(s) 869
BstEII GGTNACC 1 cut(s) 1129
BstF5I GGATG 2 cut(s) 861, 1015
BstFNI CGCG 5 cut(s) 97, 316, 596, 812, 1028
BstHHI GCGC 2 cut(s) 316, 1030
BstMAI GTCTC 2 cut(s) 676, 912
BstMCI CGRYCG 6 cut(s) 30, 122, 228, 731, 793, 960
BstPI GGTNACC 1 cut(s) 1129
BstSFI CTRYAG 1 cut(s) 550
BstUI CGCG 5 cut(s) 97, 316, 596, 812, 1028
BstV1I GCAGC 5 cut(s) 180, 197, 320, 333, 515
BstV2I GAAGAC 2 cut(s) 57, 378
BstZI CGGCCG 3 cut(s) 119, 225, 728
Bsu15I ATCGAT 1 cut(s) 30
BsuI GTATCC 1 cut(s) 581
BsuRI GGCC 7 cut(s) 121, 164, 227, 524, 730, 896, 932
BsuTUI ATCGAT 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 869
BtgZI GCGATG 2 cut(s) 793, 1088
BtrI CACGTC 1 cut(s) 664
BtsCI GGATG 2 cut(s) 861, 1015
BveI ACCTGC 2 cut(s) 492, 557
Cac8I GCNNGC 4 cut(s) 166, 489, 526, 533
CfoI GCGC 2 cut(s) 316, 1030
Cfr10I RCCGGY 7 cut(s) 70, 79, 792, 928, 1030, 1133, 1151
Cfr13I GGNCC 2 cut(s) 894, 931
ClaI ATCGAT 1 cut(s) 30
CseI GACGC 4 cut(s) 585, 602, 769, 1034
Csp6I GTAC 1 cut(s) 886
CspAI ACCGGT 2 cut(s) 1133, 1151
CviAII CATG 2 cut(s) 247, 432
CviQI GTAC 1 cut(s) 886
DdeI CTNAG 3 cut(s) 145, 948, 980
DrdI GACNNNNNNGTC 2 cut(s) 599, 668
DseDI GACNNNNNNGTC 2 cut(s) 599, 668
EaeI YGGCCR 3 cut(s) 119, 225, 728
EagI CGGCCG 3 cut(s) 119, 225, 728
Eam1104I CTCTTC 3 cut(s) 180, 731, 1059
EarI CTCTTC 3 cut(s) 180, 731, 1059
EciI GGCGGA 4 cut(s) 231, 817, 855, 1089
Ecl136II GAGCTC 1 cut(s) 243
EclXI CGGCCG 3 cut(s) 119, 225, 728
Eco147I AGGCCT 1 cut(s) 524
Eco24I GRGCYC 1 cut(s) 245
Eco52I CGGCCG 3 cut(s) 119, 225, 728
Eco53kI GAGCTC 1 cut(s) 243
Eco57I CTGAAG 2 cut(s) 69, 1130
Eco91I GGTNACC 1 cut(s) 1129
EcoICRI GAGCTC 1 cut(s) 243
EcoO65I GGTNACC 1 cut(s) 1129
EcoRI GAATTC 1 cut(s) 713
EcoT38I GRGCYC 1 cut(s) 245
FaeI CATG 2 cut(s) 250, 435
FaiI YATR 6 cut(s) 248, 433, 651, 769, 1169, 1176
FalI AAGNNNNNCTT 2 cut(s) 824, 856
FaqI GGGAC 1 cut(s) 1006
FatI CATG 2 cut(s) 246, 431
FauI CCCGC 2 cut(s) 646, 983
FokI GGATG 2 cut(s) 868, 1022
FriOI GRGCYC 1 cut(s) 245
FspBI CTAG 2 cut(s) 488, 918
GlaI GCGC 2 cut(s) 315, 1029
GsuI CTGGAG 1 cut(s) 740
HaeIII GGCC 7 cut(s) 121, 164, 227, 524, 730, 896, 932
HgaI GACGC 4 cut(s) 585, 602, 769, 1034
HhaI GCGC 2 cut(s) 316, 1030
Hin1I GRCGYC 2 cut(s) 416, 696
Hin1II CATG 2 cut(s) 250, 435
Hin6I GCGC 2 cut(s) 314, 1028
HinP1I GCGC 2 cut(s) 314, 1028
HphI GGTGA 3 cut(s) 1025, 1070, 1141
Hpy166II GTNNAC 1 cut(s) 126
Hpy188III TCNNGA 6 cut(s) 47, 127, 718, 757, 781, 1147
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 5 cut(s) 154, 844, 945, 1063, 1081
HpyCH4III ACNGT 4 cut(s) 365, 559, 1129, 1182
HpyCH4IV ACGT 5 cut(s) 132, 411, 416, 663, 696
HpyCH4V TGCA 6 cut(s) 321, 336, 357, 531, 552, 606
HpyF3I CTNAG 3 cut(s) 145, 948, 980
HpySE526I ACGT 5 cut(s) 132, 411, 416, 663, 696
Hsp92I GRCGYC 2 cut(s) 416, 696
Hsp92II CATG 2 cut(s) 250, 435
HspAI GCGC 2 cut(s) 314, 1028
LguI GCTCTTC 2 cut(s) 180, 731
LmnI GCTCC 4 cut(s) 248, 382, 631, 1105
Lsp1109I GCAGC 5 cut(s) 180, 197, 320, 333, 515
LweI GCATC 1 cut(s) 846
MaeI CTAG 2 cut(s) 488, 918
MaeII ACGT 5 cut(s) 132, 411, 416, 663, 696
MaeIII GTNAC 3 cut(s) 412, 1129, 1147
MbiI CCGCTC 1 cut(s) 118
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 2 cut(s) 271, 713
MluI ACGCGT 1 cut(s) 594
MlyI GAGTC 6 cut(s) 52, 52, 398, 940, 980, 991
MmeI TCCRAC 4 cut(s) 46, 432, 801, 954
MnlI CCTC 8 cut(s) 212, 274, 430, 471, 817, 921, 1000, 1054
MslI CAYNNNNRTG 2 cut(s) 662, 812
MspA1I CMGCKG 3 cut(s) 149, 171, 333
MvnI CGCG 5 cut(s) 97, 316, 596, 812, 1028
NheI GCTAGC 1 cut(s) 487
NlaIII CATG 2 cut(s) 250, 435
NlaIV GGNNCC 3 cut(s) 329, 482, 933
NmeAIII GCCGAG 3 cut(s) 253, 264, 907
NmuCI GTSAC 3 cut(s) 412, 1129, 1147
PaqCI CACCTGC 1 cut(s) 557
PceI AGGCCT 1 cut(s) 524
PciSI GCTCTTC 2 cut(s) 180, 731
PcsI WCGNNNNNNNCGW 3 cut(s) 786, 827, 966
PfeI GAWTC 7 cut(s) 174, 180, 377, 428, 751, 941, 1096
PinAI ACCGGT 2 cut(s) 1133, 1151
Ple19I CGATCG 2 cut(s) 30, 960
PleI GAGTC 6 cut(s) 51, 52, 398, 940, 979, 990
PpsI GAGTC 6 cut(s) 51, 52, 398, 940, 979, 990
Psp124BI GAGCTC 1 cut(s) 245
PspEI GGTNACC 1 cut(s) 1129
PspN4I GGNNCC 3 cut(s) 329, 482, 933
PspPI GGNCC 2 cut(s) 894, 931
PstI CTGCAG 1 cut(s) 554
PvuI CGATCG 2 cut(s) 30, 960
RsaI GTAC 1 cut(s) 887
RsaNI GTAC 1 cut(s) 886
RseI CAYNNNNRTG 2 cut(s) 662, 812
SacI GAGCTC 1 cut(s) 245
SapI GCTCTTC 2 cut(s) 180, 731
Sau96I GGNCC 2 cut(s) 894, 931
SchI GAGTC 6 cut(s) 52, 52, 398, 940, 980, 991
SduI GDGCHC 1 cut(s) 245
SfaNI GCATC 1 cut(s) 846
SfcI CTRYAG 1 cut(s) 550
SgrAI CRCCGGYG 1 cut(s) 1030
SmiMI CAYNNNNRTG 2 cut(s) 662, 812
SmlI CTYRAG 2 cut(s) 101, 443
SmoI CTYRAG 2 cut(s) 101, 443
Sse9I AATT 2 cut(s) 271, 713
SseBI AGGCCT 1 cut(s) 524
SspMI CTAG 2 cut(s) 488, 918
SstI GAGCTC 1 cut(s) 245
StuI AGGCCT 1 cut(s) 524
TaaI ACNGT 4 cut(s) 365, 559, 1129, 1182
TaiI ACGT 5 cut(s) 135, 414, 419, 666, 699
TaqII GACCGA 1 cut(s) 589
TasI AATT 2 cut(s) 271, 713
TatI WGTACW 1 cut(s) 885
TfiI GAWTC 7 cut(s) 174, 180, 377, 428, 751, 941, 1096
TseFI GTSAC 3 cut(s) 412, 1129, 1147
TseI GCWGC 5 cut(s) 168, 210, 321, 333, 528
Tsp45I GTSAC 3 cut(s) 412, 1129, 1147
TspDTI ATGAA 2 cut(s) 29, 265
TspGWI ACGGA 4 cut(s) 51, 170, 363, 618
XapI RAATTY 2 cut(s) 271, 713
XcmI CCANNNNNNNNNTGG 1 cut(s) 867
XspI CTAG 2 cut(s) 488, 918
ZraI GACGTC 2 cut(s) 417, 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.