AT2G38950

Transcription factor jumonji (jmj) family protein zinc finger (C5HC2 type) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006341
Physical Location & Seq
Forward (+)
16260803 .. 16265270
4468 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38950.1

Sequence Viewer

Length: 2127 bp
ATGGGCATTGAAGGTGTATCAACGTATTTGAAATCTGGAAATATGGACACAATTTCTGCTCCGCCAGGTTTTGTATCTCAAACATCGTTTGTGCTGAGGAATGTACCCCGAGACAAAGAAAGTCCCAGGTCCGTGTCGAGACAAGAGCAGACAACTGGATTCGGCACAGATGATAAAGATAGTTGCAATATGTTTCTTAAAAGCCGACCGTGGATAGTGCATGGTCACACAATTCCCAGCTCAGAGGCCTTAAGGCCGAAAAAAACTGAGGTACGGAGAAGACGGCCCCTCAAAGTGTCTGAGACCAAAGTCCTTGAGGAAGCTCCTGTGTTCAACCCAACCGAAGAGGAATTCAGGGACACACTCTCATATATATCAAGCTTGCGTGACAGAGCTGAGCCGTATGGAATCTGTTGTGTTGTTCCTCCACCTTCATGGAAACCTCCATGTCTTCTCAAGGAGAAACAAATATGGGAGGCTTCTACATTTTTCCCTCAAGTTCAGCTCTTTGGAATTCAGACCGAGAACCGAAAGATTAAAAAGGAGGTTGATGCAGATAGTAATGATGCTGCATCTGAAGGGGTTCAGTTATGTAGAGTAGAACGTGGTCCTGGGTATACTTTGAAGTCCTTTAAAAACTTTGCAGATACATACAAGAAGAGTCATTTTGGCATGAAGGATGAGGTTTTGGGTTCAGAGAACTCATCTCCATCACTTAAACCAAATGAGCTAATTGTGGCAGACATTGAAAAAGAGTACAGACAAATTGTTGAGAGTCCACTTATTGAAATTGGGGTGCTTTATGGCAATGATTTAGACACTGCAACGTTTGGAAGTGGATTTCCCTTATCTGCACCATCTGAATCTAGCAAATATTCATCAGGTTGGAATCTGAACAGTACGGCTAAGCTTCCTGGTTCTCTTCTATCATTAGAAGACTGCGAATCAGTTTGTGTTCCTCGTCTAAGTGTAGGAATGTGCTTGTCTTCCCAGTTCTGGAAATCTGAGAAGGAGAGACTCTACTCTCTCTGCTATTTGCATGTGGGCGCTCCTAGAGTGTGGTATTCCGTAGCAGGATGTCATCGATCAAAGTTTAAGGCTGCCATGAAAAGCTTCATCCTTGAGATGTCAGGAGAACAGCCAAAGAAGAGTCATAATCCTGTGATGATGATGTCTCCATATCAATTGAGCGTGGAGGGTATACCAGTGACCCGCTGTGTCCAGCACCCTGGCCAGTATGTTATTATATTTCCAGGGTCGTATTACTCTGCCTTTGACTGTGGCTTCAACTGTTTGGAGAAAGCAAACTTTGCTCCCCTTGATTGGTTGCCCCATGGGGATATTGCTGTTCAGGTGAATCAAGAGATGAGTAAAACGTCGCTGATATCGTATGATAAGCTATTATTTAGTGCTGCAAGGGAAGCTGTAAAATGTCTTAAGGAATATGGGTTGTCGAAGAAAAACACAGCATGTTACACGAGATGGAATGATTCTTGTGGGACGGATGGGTTGTTCTCCAACATAATCAAGTCACGGATCAAACTGGAGAAAAATAGACGTGAATTTCTTATCAGTTCACTAGAATCGCAAAGGATGGACAAGAGTTATGATGCTGTGAACAAAAGGGAATGCTGTGTATGTCTTGGGGATTTGTATCTTTCCGCGGTTAACTGTTCATGCTCTGCTAATCGTTACTCGTGTCTGAACCACATGAGGAAGCTCTGTGCATGTCCGTGTGACAGAAAGAGTTTTCTCTATAGGTACACTATGGATGAGTTGAATCTTCTCGTTGAAGCCCTGGAAGGTAAAAAGCTCAGCTCTATGTTCAGATGGGCAGGCATAGATCAAAAATTCTGTGCTTCTCCAGCCACCACAAGTTCAAAACCCGAAGAAGACAAAGGCAAGGAAACAGATGAGGTTACACCCTGTAATATCACGAGGAAAGATGTCGCAGCTGGAACTAAGGACCAGACAAGAGTGAAGGCGAGATCTTTGGCTGATATACTGAATGTTAAAGATGGAAACAATGATGCAAAGGAGACTTTAGAATCTTGTTCTAAGAAATCAAACAGGCCATGCGATAACGATTCCTCTGAGGCCAACGCGCCAAAGAAACAGAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034720 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
JmjC JmjN zf-C5HC2

Protein Analysis

708

Amino Acids

79.3

Weight (kDa)

8.47

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjN PF02375 109 - 142 5.1e-15 jmjN domain
JmjC PF02373 322 - 437 4.2e-36 JmjC domain, hydroxylase
zf-C5HC2 PF02928 544 - 594 1.7e-13 C5HC2 zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 617, 1201
AccII CGCG 2 cut(s) 1664, 2105
AciI CCGC 4 cut(s) 62, 1213, 1662, 1664
AclI AACGTT 1 cut(s) 827
AclWI GGATC 1 cut(s) 1544
AcoI YGGCCR 1 cut(s) 1231
AcsI RAATTY 4 cut(s) 350, 513, 1562, 1850
AcuI CTGAAG 1 cut(s) 597
AfaI GTAC 5 cut(s) 105, 273, 758, 901, 1763
AfiI CCNNNNNNNGG 2 cut(s) 996, 1323
AflII CTTAAG 2 cut(s) 250, 1436
AjiI CACGTC 1 cut(s) 1559
AjnI CCWGG 7 cut(s) 64, 125, 610, 913, 1228, 1252, 1797
AloI GAACNNNNNNTCC 2 cut(s) 1496, 1528
Alw26I GTCTC 6 cut(s) 105, 133, 296, 1009, 1179, 2033
AlwI GGATC 1 cut(s) 1544
Ama87I CYCGRG 1 cut(s) 108
AoxI GGCC 6 cut(s) 246, 254, 284, 1231, 2072, 2097
ApeKI GCWGC 4 cut(s) 569, 1100, 1412, 1952
ApoI RAATTY 4 cut(s) 350, 513, 1562, 1850
Asp700I GAANNNNTTC 2 cut(s) 582, 1112
AspLEI GCGC 2 cut(s) 1049, 2107
AspS9I GGNCC 4 cut(s) 129, 285, 608, 1966
AsuHPI GGTGA 1 cut(s) 1366
AvaI CYCGRG 1 cut(s) 108
AvaII GGWCC 3 cut(s) 129, 608, 1966
BalI TGGCCA 1 cut(s) 1233
BauI CACGAG 3 cut(s) 1477, 1696, 1936
BbsI GAAGAC 5 cut(s) 286, 443, 942, 978, 1899
BbvCI CCTCAGC 1 cut(s) 95
BbvI GCAGC 4 cut(s) 556, 1087, 1399, 1964
BccI CCATC 7 cut(s) 718, 865, 1476, 1499, 1588, 1824, 2012
BceAI ACGGC 3 cut(s) 299, 385, 918
BciT130I CCWGG 7 cut(s) 66, 127, 612, 915, 1230, 1254, 1799
BcoDI GTCTC 6 cut(s) 105, 133, 296, 1009, 1179, 2033
BfaI CTAG 3 cut(s) 867, 1053, 1580
BfmI CTRYAG 1 cut(s) 1756
BfoI RGCGCY 1 cut(s) 1050
BfrI CTTAAG 2 cut(s) 250, 1436
BglII AGATCT 1 cut(s) 1988
BisI GCNGC 4 cut(s) 570, 1101, 1413, 1953
BlpI GCTNAGC 3 cut(s) 396, 906, 1814
BlsI GCNGC 4 cut(s) 571, 1102, 1414, 1954
Bme1390I CCNGG 7 cut(s) 66, 127, 612, 915, 1230, 1254, 1799
Bme18I GGWCC 3 cut(s) 129, 608, 1966
BmeT110I CYCGRG 1 cut(s) 108
BmgBI CACGTC 1 cut(s) 1559
BmgT120I GGNCC 4 cut(s) 129, 285, 608, 1966
BmiI GGNNCC 1 cut(s) 287
BmrFI CCNGG 7 cut(s) 66, 127, 612, 915, 1230, 1254, 1799
BmrI ACTGGG 1 cut(s) 985
BmsI GCATC 5 cut(s) 541, 556, 581, 1600, 2020
BmuI ACTGGG 1 cut(s) 985
BoxI GACNNNNGTC 1 cut(s) 308
BpiI GAAGAC 5 cut(s) 286, 443, 942, 978, 1899
BpmI CTGGAG 2 cut(s) 1565, 1848
Bpu10I CCTNAGC 1 cut(s) 95
Bpu1102I GCTNAGC 3 cut(s) 396, 906, 1814
BpuEI CTTGAG 4 cut(s) 335, 440, 480, 1142
Bsa29I ATCGAT 1 cut(s) 1084
BsaBI GATNNNNATC 1 cut(s) 1653
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 8 cut(s) 125, 209, 611, 1228, 1253, 1333, 1662, 1797
Bsc4I CCNNNNNNNGG 2 cut(s) 996, 1323
Bse1I ACTGG 5 cut(s) 160, 991, 1205, 1234, 1548
Bse3DI GCAATG 1 cut(s) 814
Bse8I GATNNNNATC 1 cut(s) 1653
BseBI CCWGG 7 cut(s) 66, 127, 612, 915, 1230, 1254, 1799
BseCI ATCGAT 1 cut(s) 1084
BseDI CCNNGG 8 cut(s) 125, 209, 611, 1228, 1253, 1333, 1662, 1797
BseGI GGATG 6 cut(s) 685, 1082, 1116, 1510, 1599, 1777
BseJI GATNNNNATC 1 cut(s) 1653
BseLI CCNNNNNNNGG 2 cut(s) 996, 1323
BseMI GCAATG 1 cut(s) 814
BseMII CTCAG 8 cut(s) 86, 255, 258, 291, 387, 996, 1828, 2085
BseNI ACTGG 5 cut(s) 160, 991, 1205, 1234, 1548
BseXI GCAGC 4 cut(s) 556, 1087, 1399, 1964
BseYI CCCAGC 1 cut(s) 236
BsgI GTGCAG 1 cut(s) 837
Bsh1236I CGCG 2 cut(s) 1664, 2105
Bsh1285I CGRYCG 1 cut(s) 209
BshFI GGCC 6 cut(s) 248, 256, 286, 1233, 2074, 2099
BshVI ATCGAT 1 cut(s) 1084
BsiEI CGRYCG 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 108
BslFI GGGAC 3 cut(s) 108, 371, 1513
BslI CCNNNNNNNGG 2 cut(s) 996, 1323
BsmAI GTCTC 6 cut(s) 105, 133, 296, 1009, 1179, 2033
BsmFI GGGAC 3 cut(s) 108, 371, 1513
BsmI GAATGC 1 cut(s) 1634
BsnI GGCC 6 cut(s) 248, 256, 286, 1233, 2074, 2099
Bso31I GGTCTC 1 cut(s) 296
BsoBI CYCGRG 1 cut(s) 108
Bsp143I GATC 4 cut(s) 1085, 1536, 1843, 1988
Bsp1720I GCTNAGC 3 cut(s) 396, 906, 1814
Bsp19I CCATGG 1 cut(s) 1333
BspACI CCGC 4 cut(s) 62, 1213, 1662, 1664
BspANI GGCC 6 cut(s) 248, 256, 286, 1233, 2074, 2099
BspCNI CTCAG 8 cut(s) 87, 254, 259, 292, 388, 997, 1827, 2086
BspDI ATCGAT 1 cut(s) 1084
BspFNI CGCG 2 cut(s) 1664, 2105
BspLI GGNNCC 1 cut(s) 287
BspPI GGATC 1 cut(s) 1544
BspTI CTTAAG 2 cut(s) 250, 1436
BspTNI GGTCTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 814
BsrI ACTGG 5 cut(s) 160, 991, 1205, 1234, 1548
BssECI CCNNGG 8 cut(s) 125, 209, 611, 1228, 1253, 1333, 1662, 1797
BssMI GATC 4 cut(s) 1085, 1536, 1843, 1988
BssNAI GTATAC 2 cut(s) 618, 1202
BssSI CACGAG 3 cut(s) 1477, 1696, 1936
BssT1I CCWWGG 1 cut(s) 1333
Bst1107I GTATAC 2 cut(s) 618, 1202
Bst2BI CACGAG 3 cut(s) 1477, 1696, 1936
Bst2UI CCWGG 7 cut(s) 66, 127, 612, 915, 1230, 1254, 1799
Bst4CI ACNGT 5 cut(s) 210, 899, 1280, 1292, 1673
Bst6I CTCTTC 4 cut(s) 339, 653, 927, 1142
BstAFI CTTAAG 2 cut(s) 250, 1436
BstAPI GCANNNNNTGC 1 cut(s) 1310
BstC8I GCNNGC 2 cut(s) 383, 1837
BstDSI CCRYGG 3 cut(s) 209, 1333, 1662
BstF5I GGATG 6 cut(s) 685, 1082, 1116, 1510, 1599, 1777
BstFNI CGCG 2 cut(s) 1664, 2105
BstH2I RGCGCY 1 cut(s) 1050
BstHHI GCGC 2 cut(s) 1049, 2107
BstKTI GATC 4 cut(s) 1088, 1539, 1846, 1991
BstMAI GTCTC 6 cut(s) 105, 133, 296, 1009, 1179, 2033
BstMBI GATC 4 cut(s) 1085, 1536, 1843, 1988
BstMCI CGRYCG 1 cut(s) 209
BstMWI GCNNNNNNNGC 3 cut(s) 1310, 1421, 1865
BstNI CCWGG 7 cut(s) 66, 127, 612, 915, 1230, 1254, 1799
BstNSI RCATGY 3 cut(s) 1043, 1473, 1731
BstPAI GACNNNNGTC 1 cut(s) 308
BstSCI CCNGG 7 cut(s) 64, 125, 610, 913, 1228, 1252, 1797
BstSFI CTRYAG 1 cut(s) 1756
BstUI CGCG 2 cut(s) 1664, 2105
BstV1I GCAGC 4 cut(s) 556, 1087, 1399, 1964
BstV2I GAAGAC 5 cut(s) 286, 443, 942, 978, 1899
BstX2I RGATCY 1 cut(s) 1988
BstXI CCANNNNNNTGG 2 cut(s) 435, 1229
BstYI RGATCY 1 cut(s) 1988
BstZ17I GTATAC 2 cut(s) 618, 1202
Bsu15I ATCGAT 1 cut(s) 1084
BsuRI GGCC 6 cut(s) 248, 256, 286, 1233, 2074, 2099
BsuTUI ATCGAT 1 cut(s) 1084
BtgI CCRYGG 3 cut(s) 209, 1333, 1662
BtrI CACGTC 1 cut(s) 1559
BtsCI GGATG 6 cut(s) 685, 1082, 1116, 1510, 1599, 1777
BtsI GCAGTG 1 cut(s) 819
BtsIMutI CAGTG 2 cut(s) 819, 1212
Cac8I GCNNGC 2 cut(s) 383, 1837
CfoI GCGC 2 cut(s) 1049, 2107
Cfr13I GGNCC 4 cut(s) 129, 285, 608, 1966
Cfr42I CCGCGG 1 cut(s) 1665
ClaI ATCGAT 1 cut(s) 1084
Csp6I GTAC 5 cut(s) 104, 272, 757, 900, 1762
CviQI GTAC 5 cut(s) 104, 272, 757, 900, 1762
DpnI GATC 4 cut(s) 1087, 1538, 1845, 1990
DpnII GATC 4 cut(s) 1085, 1536, 1843, 1988
DraI TTTAAA 1 cut(s) 634
EaeI YGGCCR 1 cut(s) 1231
Eam1104I CTCTTC 4 cut(s) 339, 653, 927, 1142
EarI CTCTTC 4 cut(s) 339, 653, 927, 1142
EciI GGCGGA 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 1333
Eco147I AGGCCT 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 296
Eco32I GATATC 1 cut(s) 1386
Eco47I GGWCC 3 cut(s) 129, 608, 1966
Eco57I CTGAAG 1 cut(s) 597
Eco88I CYCGRG 1 cut(s) 108
EcoRI GAATTC 2 cut(s) 350, 513
EcoRII CCWGG 7 cut(s) 64, 125, 610, 913, 1228, 1252, 1797
EcoRV GATATC 1 cut(s) 1386
EcoT14I CCWWGG 1 cut(s) 1333
ErhI CCWWGG 1 cut(s) 1333
FaqI GGGAC 3 cut(s) 108, 371, 1513
FauI CCCGC 1 cut(s) 1220
FblI GTMKAC 2 cut(s) 617, 1201
Fnu4HI GCNGC 4 cut(s) 570, 1101, 1413, 1953
FokI GGATG 6 cut(s) 692, 1089, 1103, 1517, 1606, 1784
Fsp4HI GCNGC 4 cut(s) 570, 1101, 1413, 1953
FspBI CTAG 3 cut(s) 867, 1053, 1580
GlaI GCGC 2 cut(s) 1048, 2106
GluI GCNGC 4 cut(s) 570, 1101, 1413, 1953
GsaI CCCAGC 1 cut(s) 240
GsuI CTGGAG 2 cut(s) 1565, 1848
HaeII RGCGCY 1 cut(s) 1050
HaeIII GGCC 6 cut(s) 248, 256, 286, 1233, 2074, 2099
HhaI GCGC 2 cut(s) 1049, 2107
Hin6I GCGC 2 cut(s) 1047, 2105
HinP1I GCGC 2 cut(s) 1047, 2105
HincII GTYRAC 1 cut(s) 1669
HindII GTYRAC 1 cut(s) 1669
HindIII AAGCTT 3 cut(s) 379, 908, 1111
HpaI GTTAAC 1 cut(s) 1669
HphI GGTGA 1 cut(s) 1366
Hpy166II GTNNAC 7 cut(s) 618, 779, 1202, 1577, 1618, 1669, 1764
Hpy188III TCNNGA 6 cut(s) 36, 138, 997, 1131, 1361, 1936
Hpy8I GTNNAC 7 cut(s) 618, 779, 1202, 1577, 1618, 1669, 1764
Hpy99I CGWCG 1 cut(s) 1381
HpyAV CCTTC 7 cut(s) 5, 441, 572, 670, 1003, 1796, 1975
HpyCH4III ACNGT 5 cut(s) 210, 899, 1280, 1292, 1673
HpyCH4IV ACGT 5 cut(s) 23, 604, 827, 1376, 1558
HpyF10VI GCNNNNNNNGC 3 cut(s) 1310, 1421, 1865
HpySE526I ACGT 5 cut(s) 23, 604, 827, 1376, 1558
HspAI GCGC 2 cut(s) 1047, 2105
KspAI GTTAAC 1 cut(s) 1669
KspI CCGCGG 1 cut(s) 1665
Kzo9I GATC 4 cut(s) 1085, 1536, 1843, 1988
LmnI GCTCC 4 cut(s) 64, 328, 1054, 1318
Lsp1109I GCAGC 4 cut(s) 556, 1087, 1399, 1964
LweI GCATC 5 cut(s) 541, 556, 581, 1600, 2020
MaeI CTAG 3 cut(s) 867, 1053, 1580
MaeII ACGT 5 cut(s) 23, 604, 827, 1376, 1558
MaeIII GTNAC 8 cut(s) 224, 386, 1207, 1472, 1530, 1691, 1736, 1918
MalI GATC 4 cut(s) 1087, 1538, 1845, 1990
MboI GATC 4 cut(s) 1085, 1536, 1843, 1988
MfeI CAATTG 1 cut(s) 1184
MflI RGATCY 1 cut(s) 1988
MlsI TGGCCA 1 cut(s) 1233
MluNI TGGCCA 1 cut(s) 1233
MlyI GAGTC 4 cut(s) 670, 784, 1011, 1159
MmeI TCCRAC 2 cut(s) 866, 1542
Mox20I TGGCCA 1 cut(s) 1233
MroXI GAANNNNTTC 2 cut(s) 582, 1112
MscI TGGCCA 1 cut(s) 1233
MseI TTAA 9 cut(s) 198, 251, 537, 633, 717, 1095, 1437, 1668, 2013
MslI CAYNNNNRTG 2 cut(s) 433, 1732
Msp20I TGGCCA 1 cut(s) 1233
MspA1I CMGCKG 3 cut(s) 1215, 1664, 1955
MspCI CTTAAG 2 cut(s) 250, 1436
MspR9I CCNGG 7 cut(s) 66, 127, 612, 915, 1230, 1254, 1799
MunI CAATTG 1 cut(s) 1184
Mva1269I GAATGC 1 cut(s) 1634
MvaI CCWGG 7 cut(s) 66, 127, 612, 915, 1230, 1254, 1799
MvnI CGCG 2 cut(s) 1664, 2105
MwoI GCNNNNNNNGC 3 cut(s) 1310, 1421, 1865
NcoI CCATGG 1 cut(s) 1333
NdeII GATC 4 cut(s) 1085, 1536, 1843, 1988
NlaIV GGNNCC 1 cut(s) 287
NmuCI GTSAC 5 cut(s) 224, 386, 1207, 1530, 1736
NspI RCATGY 3 cut(s) 1043, 1473, 1731
PceI AGGCCT 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 1385
PctI GAATGC 1 cut(s) 1634
PdmI GAANNNNTTC 2 cut(s) 582, 1112
PkrI GCNGC 4 cut(s) 571, 1102, 1414, 1954
PleI GAGTC 4 cut(s) 669, 783, 1011, 1158
PpsI GAGTC 4 cut(s) 669, 783, 1011, 1158
PshAI GACNNNNGTC 1 cut(s) 308
Psp1406I AACGTT 1 cut(s) 827
Psp6I CCWGG 7 cut(s) 64, 125, 610, 913, 1228, 1252, 1797
PspFI CCCAGC 1 cut(s) 236
PspGI CCWGG 7 cut(s) 64, 125, 610, 913, 1228, 1252, 1797
PspN4I GGNNCC 1 cut(s) 287
PspPI GGNCC 4 cut(s) 129, 285, 608, 1966
PsuI RGATCY 1 cut(s) 1988
PvuII CAGCTG 1 cut(s) 1955
RsaI GTAC 5 cut(s) 105, 273, 758, 901, 1763
RsaNI GTAC 5 cut(s) 104, 272, 757, 900, 1762
RseI CAYNNNNRTG 2 cut(s) 433, 1732
SacII CCGCGG 1 cut(s) 1665
SaqAI TTAA 9 cut(s) 198, 251, 537, 633, 717, 1095, 1437, 1668, 2013
SatI GCNGC 4 cut(s) 570, 1101, 1413, 1953
Sau3AI GATC 4 cut(s) 1085, 1536, 1843, 1988
Sau96I GGNCC 4 cut(s) 129, 285, 608, 1966
SchI GAGTC 4 cut(s) 670, 784, 1011, 1159
ScrFI CCNGG 7 cut(s) 66, 127, 612, 915, 1230, 1254, 1799
SfaNI GCATC 5 cut(s) 541, 556, 581, 1600, 2020
SfcI CTRYAG 1 cut(s) 1756
Sfr303I CCGCGG 1 cut(s) 1665
SgrBI CCGCGG 1 cut(s) 1665
SinI GGWCC 3 cut(s) 129, 608, 1966
SmiMI CAYNNNNRTG 2 cut(s) 433, 1732
SmlI CTYRAG 6 cut(s) 250, 314, 455, 495, 1121, 1436
SmoI CTYRAG 6 cut(s) 250, 314, 455, 495, 1121, 1436
SseBI AGGCCT 1 cut(s) 248
SsiI CCGC 4 cut(s) 62, 1213, 1662, 1664
SspI AATATT 1 cut(s) 875
SspMI CTAG 3 cut(s) 867, 1053, 1580
StuI AGGCCT 1 cut(s) 248
StyD4I CCNGG 7 cut(s) 64, 125, 610, 913, 1228, 1252, 1797
StyI CCWWGG 1 cut(s) 1333
TaaI ACNGT 5 cut(s) 210, 899, 1280, 1292, 1673
TaiI ACGT 5 cut(s) 26, 607, 830, 1379, 1561
TaqI TCGA 3 cut(s) 137, 1084, 1454
TaqII GACCGA 1 cut(s) 536
TatI WGTACW 1 cut(s) 756
Tru1I TTAA 9 cut(s) 198, 251, 537, 633, 717, 1095, 1437, 1668, 2013
Tru9I TTAA 9 cut(s) 198, 251, 537, 633, 717, 1095, 1437, 1668, 2013
TscAI CASTG 2 cut(s) 826, 1212
TseFI GTSAC 5 cut(s) 224, 386, 1207, 1530, 1736
TseI GCWGC 4 cut(s) 569, 1100, 1412, 1952
Tsp45I GTSAC 5 cut(s) 224, 386, 1207, 1530, 1736
TspDTI ATGAA 6 cut(s) 423, 689, 867, 1105, 1121, 1665
TspGWI ACGGA 6 cut(s) 121, 289, 1057, 1517, 1549, 1722
TspRI CASTG 2 cut(s) 826, 1212
Vha464I CTTAAG 2 cut(s) 250, 1436
VpaK11BI GGWCC 3 cut(s) 129, 608, 1966
XapI RAATTY 4 cut(s) 350, 513, 1562, 1850
XceI RCATGY 3 cut(s) 1043, 1473, 1731
XmiI GTMKAC 2 cut(s) 617, 1201
XmnI GAANNNNTTC 2 cut(s) 582, 1112
XspI CTAG 3 cut(s) 867, 1053, 1580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.