Rmu_sc0024450.1_g000001

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024450.1
OG0006341
Physical Location & Seq
Forward (+)
1 .. 2478
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024450.1_g000001.1.cds

Sequence Viewer

Length: 1425 bp
gaaccccgcctcccgaaaggtgttactcgtggatgtccagaatccggttattgtgtaaaggtaacagaaaggtggcatcctgagggtgcagtaatagacactcttgaaaaggctcctgttttctatccaacacatgaggaatttaaggacactcttaagtatgttacaagtataagtgcaagagcagcgcaatatggtatctgtcgtattagtcctcctccttcctggaaacctccatcccttcttgaggaaaacagcatatggaatagttccacatttgctccccatattcagcggattgatgggctggggagtaaaatggatggctctgatgagagcacaaaaaagaagagaagaatctcgacagtgggtttggactctggatttgaatctacctcaagtctgggtgaaacaggacagtctgatgtcaattgctttgaatcagaacctggtccagaattcactcttgacagttttaagaggtatgcagatggtttcaagcatcagtatttctgcaaaagtgacgtcataggtaatcaagagcagtgggagccgtcagtggagaatattgaagctgaatataaacgtatcattgaaaacccaactgaaggaatcgaggtgctttgtggaaattatttggagactaaagcgtttggcagtggatttccaacagtatcacatgattccaatcctttgggaacatcagattaccctgattgcttgccatctggctggaatttaaataatctacccagactccctggttctcttctttcttttgaaagccatgacacatgtcatattttagtgcctcagactcatgtaggaatgtgtttttcatctagtctttggagagttgaagagcaccacttatactcattgtgttacaatcatctgggtgctcctaaagtttggtatggtgtccctgggaaatcccgcataaattttgaggcagccatgaggaagtcctttccagatttattaaaacagcataggctggttaagcaagtatccccctccacattgaaatcagaggacatacctgtctttcgttgcattcagcgtcctggagagtttgttcttgtcttccctggagcttatcattcagaatttgattgtggctttaatttttctgagagggcatgttttgctcctctagactggttgcctcatggacagaatgctgttgaactttactctgaacaggggaggaaaacagctatatcctatgataaggtgttgcttggagcagctagggaagctgtaagggcacaatgggaaatttcactgttgaagaagaacaaaaactcagagaatttacgctggaaaaatgcctgcttaaaggatgggatcttaacagaagcactcaaggtaatttctagattccataacattattttaaagtcatctgcggatcttgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034720 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
JmjC JmjN zf-C5HC2

Protein Analysis

474

Amino Acids

53.21

Weight (kDa)

6.24

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1043
AatII GACGTC 1 cut(s) 528
AciI CCGC 4 cut(s) 7, 295, 937, 1412
AclWI GGATC 2 cut(s) 1358, 1422
AcsI RAATTY 7 cut(s) 140, 458, 736, 943, 1109, 1281, 1315
AcuI CTGAAG 1 cut(s) 627
AcyI GRCGYC 1 cut(s) 525
AfiI CCNNNNNNNGG 3 cut(s) 44, 247, 608
AflII CTTAAG 1 cut(s) 155
AflIII ACRYGT 1 cut(s) 794
AjnI CCWGG 6 cut(s) 224, 448, 760, 925, 1066, 1090
AloI GAACNNNNNNTCC 3 cut(s) 26, 1062, 1094
AluBI AGCT 5 cut(s) 575, 1097, 1220, 1253, 1262
AluI AGCT 5 cut(s) 575, 1097, 1220, 1253, 1262
Alw21I GWGCWC 3 cut(s) 341, 867, 904
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 2 cut(s) 1358, 1422
AlwNI CAGNNNCTG 1 cut(s) 449
ApeKI GCWGC 3 cut(s) 185, 953, 1250
ApoI RAATTY 7 cut(s) 140, 458, 736, 943, 1109, 1281, 1315
ArsI GACNNNNNNTTYG 6 cut(s) 355, 368, 387, 400, 510, 542
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 452
AsuHPI GGTGA 1 cut(s) 419
AvaII GGWCC 1 cut(s) 452
AxyI CCTNAGG 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 1273
BauI CACGAG 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 1078
Bbv12I GWGCWC 3 cut(s) 341, 867, 904
BbvI GCAGC 3 cut(s) 197, 965, 1262
BccI CCATC 6 cut(s) 244, 296, 317, 485, 733, 1340
BceAI ACGGC 1 cut(s) 538
BciT130I CCWGG 6 cut(s) 226, 450, 762, 927, 1068, 1092
BciVI GTATCC 1 cut(s) 1021
BcoDI GTCTC 1 cut(s) 635
BfaI CTAG 4 cut(s) 843, 1157, 1254, 1380
BfrI CTTAAG 1 cut(s) 155
BfuI GTATCC 1 cut(s) 1021
BisI GCNGC 3 cut(s) 186, 954, 1251
BlsI GCNGC 3 cut(s) 187, 955, 1252
Bme1390I CCNGG 6 cut(s) 226, 450, 762, 927, 1068, 1092
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 2 cut(s) 114, 552
BmrFI CCNGG 6 cut(s) 226, 450, 762, 927, 1068, 1092
BmsI GCATC 2 cut(s) 85, 511
BoxI GACNNNNGTC 1 cut(s) 795
BpiI GAAGAC 1 cut(s) 1078
BpmI CTGGAG 2 cut(s) 1089, 1113
BpuEI CTTGAG 3 cut(s) 266, 382, 1352
BsaBI GATNNNNATC 2 cut(s) 388, 687
BsaHI GRCGYC 1 cut(s) 525
BsaJI CCNNGG 4 cut(s) 760, 925, 926, 1090
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 7 cut(s) 24, 265, 295, 741, 771, 1062, 1092
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 247, 608
Bse1I ACTGG 1 cut(s) 1166
Bse21I CCTNAGG 1 cut(s) 81
Bse8I GATNNNNATC 2 cut(s) 388, 687
BseBI CCWGG 6 cut(s) 226, 450, 762, 927, 1068, 1092
BseDI CCNNGG 4 cut(s) 760, 925, 926, 1090
BseGI GGATG 5 cut(s) 38, 76, 236, 328, 1351
BseJI GATNNNNATC 2 cut(s) 388, 687
BseLI CCNNNNNNNGG 3 cut(s) 44, 247, 608
BseMII CTCAG 4 cut(s) 72, 827, 1125, 1323
BseNI ACTGG 1 cut(s) 1166
BseRI GAGGAG 2 cut(s) 207, 1143
BseSI GKGCMC 1 cut(s) 1273
BseXI GCAGC 3 cut(s) 197, 965, 1262
BseYI CCCAGC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 108
BsiHKAI GWGCWC 3 cut(s) 341, 867, 904
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 908
BslI CCNNNNNNNGG 3 cut(s) 44, 247, 608
BsmAI GTCTC 1 cut(s) 635
BsmFI GGGAC 1 cut(s) 908
BsmI GAATGC 2 cut(s) 1056, 1186
Bsp1286I GDGCHC 4 cut(s) 341, 867, 904, 1273
Bsp143I GATC 2 cut(s) 1350, 1414
BspACI CCGC 4 cut(s) 7, 295, 937, 1412
BspCNI CTCAG 4 cut(s) 73, 826, 1126, 1322
BspLI GGNNCC 2 cut(s) 114, 552
BspPI GGATC 2 cut(s) 1358, 1422
BspQI GCTCTTC 1 cut(s) 855
BspTI CTTAAG 1 cut(s) 155
BsrI ACTGG 1 cut(s) 1166
BssECI CCNNGG 4 cut(s) 760, 925, 926, 1090
BssMI GATC 2 cut(s) 1350, 1414
BssNI GRCGYC 1 cut(s) 525
BssSI CACGAG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 27
Bst2UI CCWGG 6 cut(s) 226, 450, 762, 927, 1068, 1092
Bst4CI ACNGT 5 cut(s) 367, 420, 473, 673, 1290
Bst6I CTCTTC 3 cut(s) 344, 774, 855
BstACI GRCGYC 1 cut(s) 525
BstAFI CTTAAG 1 cut(s) 155
BstAPI GCANNNNNTGC 1 cut(s) 1148
BstC8I GCNNGC 2 cut(s) 722, 1336
BstDEI CTNAG 4 cut(s) 81, 813, 1134, 1309
BstENI CCTNNNNNAGG 1 cut(s) 245
BstF5I GGATG 5 cut(s) 38, 76, 236, 328, 1351
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 2 cut(s) 1353, 1417
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 2 cut(s) 1350, 1414
BstMWI GCNNNNNNNGC 7 cut(s) 185, 550, 1003, 1148, 1259, 1268, 1418
BstNI CCWGG 6 cut(s) 226, 450, 762, 927, 1068, 1092
BstNSI RCATGY 2 cut(s) 798, 1146
BstPAI GACNNNNGTC 1 cut(s) 795
BstSCI CCNGG 6 cut(s) 224, 448, 760, 925, 1066, 1090
BstSLI GKGCMC 1 cut(s) 1273
BstV1I GCAGC 3 cut(s) 197, 965, 1262
BstV2I GAAGAC 1 cut(s) 1078
BstX2I RGATCY 2 cut(s) 1350, 1414
BstXI CCANNNNNNTGG 2 cut(s) 694, 732
BstYI RGATCY 2 cut(s) 1350, 1414
Bsu36I CCTNAGG 1 cut(s) 81
BsuI GTATCC 1 cut(s) 1021
BtsCI GGATG 5 cut(s) 38, 76, 236, 328, 1351
BtsI GCAGTG 2 cut(s) 551, 664
BtsIMutI CAGTG 5 cut(s) 372, 551, 564, 664, 1286
Cac8I GCNNGC 2 cut(s) 722, 1336
CaiI CAGNNNCTG 1 cut(s) 449
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 452
CseI GACGC 1 cut(s) 1052
CsiI ACCWGGT 1 cut(s) 448
CspCI CAANNNNNGTGG 2 cut(s) 527, 562
CviAII CATG 8 cut(s) 134, 680, 788, 795, 821, 958, 1143, 1172
DdeI CTNAG 4 cut(s) 81, 813, 1134, 1309
DpnI GATC 2 cut(s) 1352, 1416
DpnII GATC 2 cut(s) 1350, 1414
DraI TTTAAA 2 cut(s) 741, 1401
DrdI GACNNNNNNGTC 1 cut(s) 1043
DseDI GACNNNNNNGTC 1 cut(s) 1043
Eam1104I CTCTTC 3 cut(s) 344, 774, 855
EarI CTCTTC 3 cut(s) 344, 774, 855
Eco47I GGWCC 1 cut(s) 452
Eco57I CTGAAG 1 cut(s) 627
Eco81I CCTNAGG 1 cut(s) 81
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoRI GAATTC 1 cut(s) 458
EcoRII CCWGG 6 cut(s) 224, 448, 760, 925, 1066, 1090
FaeI CATG 8 cut(s) 137, 683, 791, 798, 824, 961, 1146, 1175
FaqI GGGAC 1 cut(s) 908
FatI CATG 8 cut(s) 133, 679, 787, 794, 820, 957, 1142, 1171
FauI CCCGC 2 cut(s) 14, 944
FauNDI CATATG 1 cut(s) 260
Fnu4HI GCNGC 3 cut(s) 186, 954, 1251
FokI GGATG 5 cut(s) 45, 63, 223, 335, 1358
Fsp4HI GCNGC 3 cut(s) 186, 954, 1251
FspBI CTAG 4 cut(s) 843, 1157, 1254, 1380
GlaI GCGC 1 cut(s) 189
GluI GCNGC 3 cut(s) 186, 954, 1251
GsaI CCCAGC 1 cut(s) 311
GsuI CTGGAG 2 cut(s) 1089, 1113
HapII CCGG 1 cut(s) 45
HgaI GACGC 1 cut(s) 1052
HhaI GCGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 525
Hin1II CATG 8 cut(s) 137, 683, 791, 798, 824, 961, 1146, 1175
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HpaII CCGG 1 cut(s) 45
HphI GGTGA 1 cut(s) 419
HpyAV CCTTC 3 cut(s) 231, 251, 602
HpyCH4III ACNGT 5 cut(s) 367, 420, 473, 673, 1290
HpyCH4IV ACGT 2 cut(s) 525, 586
HpyCH4V TGCA 5 cut(s) 89, 179, 488, 516, 1056
HpyF10VI GCNNNNNNNGC 7 cut(s) 185, 550, 1003, 1148, 1259, 1268, 1418
HpyF3I CTNAG 4 cut(s) 81, 813, 1134, 1309
HpySE526I ACGT 2 cut(s) 525, 586
Hsp92I GRCGYC 1 cut(s) 525
Hsp92II CATG 8 cut(s) 137, 683, 791, 798, 824, 961, 1146, 1175
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 2 cut(s) 1350, 1414
LguI GCTCTTC 1 cut(s) 855
LmnI GCTCC 7 cut(s) 118, 286, 550, 907, 1094, 1156, 1247
Lsp1109I GCAGC 3 cut(s) 197, 965, 1262
LweI GCATC 2 cut(s) 85, 511
MabI ACCWGGT 1 cut(s) 448
MaeI CTAG 4 cut(s) 843, 1157, 1254, 1380
MaeII ACGT 2 cut(s) 525, 586
MaeIII GTNAC 5 cut(s) 22, 61, 163, 521, 884
MalI GATC 2 cut(s) 1352, 1416
MboI GATC 2 cut(s) 1350, 1414
MboII GAAGA 7 cut(s) 361, 366, 761, 872, 1078, 1306, 1309
MfeI CAATTG 1 cut(s) 430
MflI RGATCY 2 cut(s) 1350, 1414
MhlI GDGCHC 4 cut(s) 341, 867, 904, 1273
MlyI GAGTC 3 cut(s) 371, 750, 811
MmeI TCCRAC 2 cut(s) 152, 692
MslI CAYNNNNRTG 1 cut(s) 897
MspA1I CMGCKG 1 cut(s) 295
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 6 cut(s) 226, 450, 762, 927, 1068, 1092
MunI CAATTG 1 cut(s) 430
Mva1269I GAATGC 2 cut(s) 1056, 1186
MvaI CCWGG 6 cut(s) 226, 450, 762, 927, 1068, 1092
MwoI GCNNNNNNNGC 7 cut(s) 185, 550, 1003, 1148, 1259, 1268, 1418
NdeI CATATG 1 cut(s) 260
NdeII GATC 2 cut(s) 1350, 1414
NlaIII CATG 8 cut(s) 137, 683, 791, 798, 824, 961, 1146, 1175
NlaIV GGNNCC 2 cut(s) 114, 552
NmuCI GTSAC 1 cut(s) 521
NspI RCATGY 2 cut(s) 798, 1146
PasI CCCWGGG 1 cut(s) 926
PciI ACATGT 1 cut(s) 794
PciSI GCTCTTC 1 cut(s) 855
PctI GAATGC 2 cut(s) 1056, 1186
PfeI GAWTC 7 cut(s) 41, 357, 389, 440, 612, 683, 1383
PfoI TCCNGGA 2 cut(s) 224, 1066
PkrI GCNGC 3 cut(s) 187, 955, 1252
PleI GAGTC 3 cut(s) 371, 750, 811
PpsI GAGTC 3 cut(s) 371, 750, 811
PscI ACATGT 1 cut(s) 794
PshAI GACNNNNGTC 1 cut(s) 795
Psp6I CCWGG 6 cut(s) 224, 448, 760, 925, 1066, 1090
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 6 cut(s) 224, 448, 760, 925, 1066, 1090
PspN4I GGNNCC 2 cut(s) 114, 552
PspPI GGNCC 1 cut(s) 452
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 2 cut(s) 1350, 1414
RseI CAYNNNNRTG 1 cut(s) 897
SapI GCTCTTC 1 cut(s) 855
SatI GCNGC 3 cut(s) 186, 954, 1251
Sau3AI GATC 2 cut(s) 1350, 1414
Sau96I GGNCC 1 cut(s) 452
SchI GAGTC 3 cut(s) 371, 750, 811
ScrFI CCNGG 6 cut(s) 226, 450, 762, 927, 1068, 1092
SduI GDGCHC 4 cut(s) 341, 867, 904, 1273
SexAI ACCWGGT 1 cut(s) 448
SfaNI GCATC 2 cut(s) 85, 511
SinI GGWCC 1 cut(s) 452
SmiI ATTTAAAT 1 cut(s) 741
SmiMI CAYNNNNRTG 1 cut(s) 897
SmlI CTYRAG 4 cut(s) 155, 245, 397, 1367
SmoI CTYRAG 4 cut(s) 155, 245, 397, 1367
SsiI CCGC 4 cut(s) 7, 295, 937, 1412
SspI AATATT 1 cut(s) 568
SspMI CTAG 4 cut(s) 843, 1157, 1254, 1380
StyD4I CCNGG 6 cut(s) 224, 448, 760, 925, 1066, 1090
SwaI ATTTAAAT 1 cut(s) 741
TaaI ACNGT 5 cut(s) 367, 420, 473, 673, 1290
TaiI ACGT 2 cut(s) 528, 589
TaqI TCGA 2 cut(s) 362, 615
TfiI GAWTC 7 cut(s) 41, 357, 389, 440, 612, 683, 1383
TscAI CASTG 5 cut(s) 372, 551, 564, 664, 1293
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 3 cut(s) 185, 953, 1250
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 1 cut(s) 828
TspRI CASTG 5 cut(s) 372, 551, 564, 664, 1293
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 452
XagI CCTNNNNNAGG 1 cut(s) 245
XapI RAATTY 7 cut(s) 140, 458, 736, 943, 1109, 1281, 1315
XbaI TCTAGA 2 cut(s) 1156, 1379
XceI RCATGY 2 cut(s) 798, 1146
XspI CTAG 4 cut(s) 843, 1157, 1254, 1380
ZraI GACGTC 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.