Rmu_co8423625.1_g000001

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8423625.1
OG0006341
Physical Location & Seq
Forward (+)
249 .. 1226
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8423625.1_g000001.1.cds

Sequence Viewer

Length: 978 bp
atgaaaagggaatgcagcatttgtttctgcgatcttcatttctctgcagtaggttgtccttgttctgtagacagatactcatgtctgtttcatgcaaagcagttctgtttttgtgcttggagtaacaagtttttcctctaccgtcatgaaatcagcgagctaaatctacttgttgaagctttggaaggaaaattaagtgcagtcatcaaatgggcgaaagatgatcttggcctgtatttgcatgaacatcttcccaaaagcaatgcacaatcacctgggcaggtagataatcccatctctcccactgataaaataaagccgaaacagtacacatcggaagatataacgccaccgattttcagttgtggcactggtcccatttatctcactgataaaagaaagctgaaacagtacacattggaagatatatcgccaccgattttgggttttggctctgcttctagcataaaggcggaattgaaggcacgtatgctgcaatccacaatttcaaacatgttgaaagcaaacggtaatccaatagcatcccttgatgctgcaaccagtgctgcttctagcatcagggctgaattgaaggcacgtctcctgcaatcttcaatctccaacacgttgaaaggaaatgacaatccaacaggatcactcaatgctgcgacagccaatggcaatggtagaaattttgcttctagcatcgagttagagatgaaggcacatgaattccaatcaacaatcccaaatgaatataaaggcgtgtgcactccgcaacagccagtggcagcggtagaaactcctattctgcctatagaggtggcctctgatgtttcatctgtaacttcaagtgaatcatcctcggaatctgatgatataataccagatcttggcaagctttcagaagctagtcatcaagcagaaagtacggcacctcagaacattcatattcttagtgatgacagtgatggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034720 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
JmjC JmjN zf-C5HC2

Protein Analysis

325

Amino Acids

35.13

Weight (kDa)

5.41

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 271
AccB1I GGYRCC 1 cut(s) 934
AccB7I CCANNNNNTGG 1 cut(s) 893
AccI GTMKAC 1 cut(s) 69
AciI CCGC 3 cut(s) 473, 776, 794
AclWI GGATC 1 cut(s) 661
AcsI RAATTY 2 cut(s) 691, 731
AfaI GTAC 3 cut(s) 329, 413, 931
AfiI CCNNNNNNNGG 2 cut(s) 443, 893
AflIII ACRYGT 2 cut(s) 513, 624
AgsI TTSAA 8 cut(s) 176, 481, 510, 520, 592, 615, 631, 852
AjiI CACGTC 1 cut(s) 599
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 5 cut(s) 160, 179, 403, 901, 911
AluI AGCT 5 cut(s) 160, 179, 403, 901, 911
Alw21I GWGCWC 1 cut(s) 773
Alw26I GTCTC 1 cut(s) 605
Alw44I GTGCAC 1 cut(s) 769
AlwI GGATC 1 cut(s) 661
AoxI GGCC 2 cut(s) 229, 825
ApaLI GTGCAC 1 cut(s) 769
ApeKI GCWGC 6 cut(s) 15, 493, 554, 566, 665, 791
ApoI RAATTY 2 cut(s) 691, 731
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 264
AvaII GGWCC 1 cut(s) 374
BaeGI GKGCMC 1 cut(s) 773
BaeI ACNNNNGTAYC 2 cut(s) 67, 100
BanI GGYRCC 1 cut(s) 934
Bbv12I GWGCWC 1 cut(s) 773
BbvI GCAGC 6 cut(s) 27, 480, 541, 553, 652, 803
BccI CCATC 2 cut(s) 302, 965
BceAI ACGGC 1 cut(s) 948
BciT130I CCWGG 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 605
BfaI CTAG 4 cut(s) 462, 573, 702, 912
BfmI CTRYAG 3 cut(s) 45, 66, 816
BfuAI ACCTGC 1 cut(s) 271
BglII AGATCT 1 cut(s) 889
BisI GCNGC 6 cut(s) 16, 494, 555, 567, 666, 792
BlsI GCNGC 6 cut(s) 17, 495, 556, 568, 667, 793
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 374
BmgBI CACGTC 1 cut(s) 599
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 2 cut(s) 376, 936
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 4 cut(s) 541, 551, 585, 714
BplI GAGNNNNNCTC 2 cut(s) 812, 844
BsaAI YACGTR 1 cut(s) 488
BsaJI CCNNGG 2 cut(s) 275, 864
Bsc4I CCNNNNNNNGG 2 cut(s) 443, 893
Bse1I ACTGG 3 cut(s) 376, 561, 785
Bse3DI GCAATG 2 cut(s) 268, 688
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 275, 864
BseGI GGATG 2 cut(s) 542, 860
BseLI CCNNNNNNNGG 2 cut(s) 443, 893
BseMI GCAATG 2 cut(s) 268, 688
BseMII CTCAG 1 cut(s) 953
BseNI ACTGG 3 cut(s) 376, 561, 785
BseSI GKGCMC 1 cut(s) 773
BseXI GCAGC 6 cut(s) 27, 480, 541, 553, 652, 803
BsgI GTGCAG 1 cut(s) 219
BshFI GGCC 2 cut(s) 231, 827
BshNI GGYRCC 1 cut(s) 934
BsiHKAI GWGCWC 1 cut(s) 773
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 2 cut(s) 443, 893
BsmAI GTCTC 1 cut(s) 605
BsmBI CGTCTC 1 cut(s) 605
BsmFI GGGAC 1 cut(s) 360
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 2 cut(s) 231, 827
Bsp1286I GDGCHC 1 cut(s) 773
Bsp143I GATC 4 cut(s) 31, 223, 653, 889
BspACI CCGC 3 cut(s) 473, 776, 794
BspANI GGCC 2 cut(s) 231, 827
BspCNI CTCAG 1 cut(s) 952
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 376, 936
BspMAI CTGCAG 1 cut(s) 49
BspMI ACCTGC 1 cut(s) 271
BspPI GGATC 1 cut(s) 661
BspT107I GGYRCC 1 cut(s) 934
BsrDI GCAATG 2 cut(s) 268, 688
BsrI ACTGG 3 cut(s) 376, 561, 785
BssECI CCNNGG 2 cut(s) 275, 864
BssMI GATC 4 cut(s) 31, 223, 653, 889
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 5 cut(s) 143, 327, 411, 530, 968
BstAPI GCANNNNNTGC 1 cut(s) 563
BstBAI YACGTR 1 cut(s) 488
BstC8I GCNNGC 2 cut(s) 158, 899
BstDEI CTNAG 2 cut(s) 939, 956
BstF5I GGATG 2 cut(s) 542, 860
BstKTI GATC 4 cut(s) 34, 226, 656, 892
BstMAI GTCTC 1 cut(s) 605
BstMBI GATC 4 cut(s) 31, 223, 653, 889
BstMWI GCNNNNNNNGC 2 cut(s) 563, 671
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 517
BstSCI CCNGG 1 cut(s) 274
BstSFI CTRYAG 3 cut(s) 45, 66, 816
BstSLI GKGCMC 1 cut(s) 773
BstV1I GCAGC 6 cut(s) 27, 480, 541, 553, 652, 803
BstX2I RGATCY 1 cut(s) 889
BstYI RGATCY 1 cut(s) 889
BsuRI GGCC 2 cut(s) 231, 827
BtrI CACGTC 1 cut(s) 599
BtsCI GGATG 2 cut(s) 542, 860
BtsIMutI CAGTG 6 cut(s) 303, 369, 387, 568, 792, 973
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 2 cut(s) 158, 899
CciI TCATGA 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 374
Csp6I GTAC 3 cut(s) 328, 412, 930
CspCI CAANNNNNGTGG 2 cut(s) 423, 458
CviAII CATG 6 cut(s) 81, 92, 146, 242, 514, 728
CviQI GTAC 3 cut(s) 328, 412, 930
DdeI CTNAG 2 cut(s) 939, 956
DpnI GATC 4 cut(s) 33, 225, 655, 891
DpnII GATC 4 cut(s) 31, 223, 653, 889
EciI GGCGGA 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 374
EcoRI GAATTC 1 cut(s) 731
EcoRII CCWGG 1 cut(s) 274
Esp3I CGTCTC 1 cut(s) 605
FaeI CATG 6 cut(s) 84, 95, 149, 245, 517, 731
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FaqI GGGAC 1 cut(s) 360
FatI CATG 6 cut(s) 80, 91, 145, 241, 513, 727
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 6 cut(s) 16, 494, 555, 567, 666, 792
FokI GGATG 2 cut(s) 529, 847
Fsp4HI GCNGC 6 cut(s) 16, 494, 555, 567, 666, 792
FspBI CTAG 4 cut(s) 462, 573, 702, 912
GluI GCNGC 6 cut(s) 16, 494, 555, 567, 666, 792
HaeIII GGCC 2 cut(s) 231, 827
Hin1II CATG 6 cut(s) 84, 95, 149, 245, 517, 731
HindIII AAGCTT 2 cut(s) 177, 899
HinfI GANTC 2 cut(s) 857, 869
HphI GGTGA 1 cut(s) 264
Hpy166II GTNNAC 4 cut(s) 70, 330, 414, 771
Hpy188I TCNGA 6 cut(s) 337, 832, 868, 874, 907, 942
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 4 cut(s) 70, 330, 414, 771
HpyAV CCTTC 4 cut(s) 179, 475, 586, 715
HpyCH4III ACNGT 5 cut(s) 143, 327, 411, 530, 968
HpyCH4IV ACGT 3 cut(s) 487, 598, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 563, 671
HpyF3I CTNAG 2 cut(s) 939, 956
HpySE526I ACGT 3 cut(s) 487, 598, 626
Hsp92II CATG 6 cut(s) 84, 95, 149, 245, 517, 731
Kzo9I GATC 4 cut(s) 31, 223, 653, 889
Lsp1109I GCAGC 6 cut(s) 27, 480, 541, 553, 652, 803
LweI GCATC 4 cut(s) 541, 551, 585, 714
MaeI CTAG 4 cut(s) 462, 573, 702, 912
MaeII ACGT 3 cut(s) 487, 598, 626
MaeIII GTNAC 2 cut(s) 122, 844
MalI GATC 4 cut(s) 33, 225, 655, 891
MboI GATC 4 cut(s) 31, 223, 653, 889
MboII GAAGA 5 cut(s) 26, 242, 350, 434, 603
MflI RGATCY 1 cut(s) 889
MhlI GDGCHC 1 cut(s) 773
MluCI AATT 6 cut(s) 191, 476, 504, 587, 691, 731
MmeI TCCRAC 2 cut(s) 645, 671
MnlI CCTC 5 cut(s) 146, 814, 838, 874, 948
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 2 cut(s) 194, 976
MspA1I CMGCKG 1 cut(s) 794
MspR9I CCNGG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 17
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 563, 671
NdeII GATC 4 cut(s) 31, 223, 653, 889
NlaIII CATG 6 cut(s) 84, 95, 149, 245, 517, 731
NlaIV GGNNCC 2 cut(s) 376, 936
NspI RCATGY 1 cut(s) 517
PagI TCATGA 1 cut(s) 145
PciI ACATGT 1 cut(s) 513
PctI GAATGC 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 857, 869
PflMI CCANNNNNTGG 1 cut(s) 893
PkrI GCNGC 6 cut(s) 17, 495, 556, 568, 667, 793
Ppu21I YACGTR 1 cut(s) 488
PscI ACATGT 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 376, 936
PspPI GGNCC 1 cut(s) 374
PstI CTGCAG 1 cut(s) 49
PsuI RGATCY 1 cut(s) 889
RsaI GTAC 3 cut(s) 329, 413, 931
RsaNI GTAC 3 cut(s) 328, 412, 930
SaqAI TTAA 2 cut(s) 194, 976
SatI GCNGC 6 cut(s) 16, 494, 555, 567, 666, 792
Sau3AI GATC 4 cut(s) 31, 223, 653, 889
Sau96I GGNCC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 1 cut(s) 773
SfaNI GCATC 4 cut(s) 541, 551, 585, 714
SfcI CTRYAG 3 cut(s) 45, 66, 816
SinI GGWCC 1 cut(s) 374
Sse9I AATT 6 cut(s) 191, 476, 504, 587, 691, 731
SsiI CCGC 3 cut(s) 473, 776, 794
SspMI CTAG 4 cut(s) 462, 573, 702, 912
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 5 cut(s) 143, 327, 411, 530, 968
TaiI ACGT 3 cut(s) 490, 601, 629
TaqI TCGA 1 cut(s) 708
TasI AATT 6 cut(s) 191, 476, 504, 587, 691, 731
TatI WGTACW 2 cut(s) 327, 411
TfiI GAWTC 2 cut(s) 857, 869
Tru1I TTAA 2 cut(s) 194, 976
Tru9I TTAA 2 cut(s) 194, 976
TscAI CASTG 6 cut(s) 310, 376, 394, 568, 792, 973
TseI GCWGC 6 cut(s) 15, 493, 554, 566, 665, 791
TspRI CASTG 6 cut(s) 310, 376, 394, 568, 792, 973
Van91I CCANNNNNTGG 1 cut(s) 893
VneI GTGCAC 1 cut(s) 769
VpaK11BI GGWCC 1 cut(s) 374
XapI RAATTY 2 cut(s) 691, 731
XceI RCATGY 1 cut(s) 517
XmiI GTMKAC 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 4 cut(s) 462, 573, 702, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.