Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006341

Physical Location & Seq

Genomic Coordinates Forward (+)

21254316 .. 21255481

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18270.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGATAATAGATTTTAACCGAAAATTTGATACGATAATTAGTATAAGAGTTTTGATACCACAGAGTCCTGGACATTTTTTTTTCTCTTCTCCTTTTCCATGGTCGTACTCCTTTCGTGTTCATTTGCCCAGCAAAAAACCTGAAACTCCTTTAAAAACCCTGAATTTCAACCGGAGGACGAACAATTCCCGCCATTTTCCGCTTCTGGGGCCAGTCCAGATGGATACCGCGTCTGACCTGACTGACATGGATAAGTTGAAAAGACAAAGGCCATGGATACTTTTCGACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034720 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JmjC JmjN zf-C5HC2

Protein Analysis

98

Amino Acids

11.52

Weight (kDa)

10.35

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38950
fragaria_vesca	FvH4_2g21290 FvH4_2g21290
malus_domestica	MD05G1195400.v1.1 MD10G1182700.v1.1
prunus_persica	Prupe.8G222100_v2.0.a1 Prupe.8G222100_v2.0.a1 Prupe.8G222100_v2.0.a1 Prupe.8G222100_v2.0.a1 Prupe.8G222100_v2.0.a1
pyrus_communis	pycom05g18270 pycom10g15800
rosa_chinensis	RchiOBHm_Chr6g0287881
rosa_laevigata	RLG00000012459
rosa_multiflora	Rmu_co8423625.1_g000001 Rmu_sc0003163.1_g000002 Rmu_sc0024450.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180700 Rroxscaffold_7G00180850
rosa_rugosa	Rorug06G0193200
rosa_samantha	Rh6AG293600 Rh6AG302300 Rh6BG308500 Rh6CG301200 Rh6CG316200 Rh6DG300900
rosa_wichuraiana	Rw6G026120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	230
AciI	CCGC	3 cut(s)	190, 200, 228
AcsI	RAATTY	2 cut(s)	23, 163
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	169, 259
AjnI	CCWGG	1 cut(s)	67
AoxI	GGCC	2 cut(s)	209, 269
ApoI	RAATTY	2 cut(s)	23, 163
AspS9I	GGNCC	1 cut(s)	209
BccI	CCATC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	69
BciVI	GTATCC	2 cut(s)	217, 270
BfuI	GTATCC	2 cut(s)	217, 270
Bme1390I	CCNGG	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	98, 272
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	212, 289
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	98, 272
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseNI	ACTGG	2 cut(s)	212, 289
BseYI	CCCAGC	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	2 cut(s)	211, 271
BsiSI	CCGG	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	206
BsnI	GGCC	2 cut(s)	211, 271
Bsp19I	CCATGG	2 cut(s)	98, 272
BspACI	CCGC	3 cut(s)	190, 200, 228
BspANI	GGCC	2 cut(s)	211, 271
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	212, 289
BssECI	CCNNGG	2 cut(s)	98, 272
BssT1I	CCWWGG	2 cut(s)	98, 272
Bst2UI	CCWGG	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	91
BstDSI	CCRYGG	2 cut(s)	98, 272
BstFNI	CGCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	67
BstUI	CGCG	1 cut(s)	230
BsuI	GTATCC	2 cut(s)	217, 270
BsuRI	GGCC	2 cut(s)	211, 271
BtgI	CCRYGG	2 cut(s)	98, 272
Cfr13I	GGNCC	1 cut(s)	209
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	3 cut(s)	99, 247, 273
CviJI	RGCY	2 cut(s)	211, 271
CviKI_1	RGCY	2 cut(s)	211, 271
CviQI	GTAC	1 cut(s)	106
DraI	TTTAAA	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	98, 272
EcoRII	CCWGG	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	98, 272
ErhI	CCWWGG	2 cut(s)	98, 272
FaeI	CATG	3 cut(s)	102, 250, 276
FaiI	YATR	4 cut(s)	44, 100, 248, 274
FatI	CATG	3 cut(s)	98, 246, 272
FauI	CCCGC	1 cut(s)	197
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	211, 271
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	1 cut(s)	219
Hin1II	CATG	3 cut(s)	102, 250, 276
HinfI	GANTC	1 cut(s)	64
HpaII	CCGG	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
Hsp92II	CATG	3 cut(s)	102, 250, 276
MboII	GAAGA	1 cut(s)	78
MluCI	AATT	4 cut(s)	23, 36, 163, 184
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	1 cut(s)	168
MseI	TTAA	2 cut(s)	15, 152
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	208
NcoI	CCATGG	2 cut(s)	98, 272
NlaIII	CATG	3 cut(s)	102, 250, 276
NlaIV	GGNNCC	1 cut(s)	210
PfoI	TCCNGGA	1 cut(s)	67
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	209
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	15, 152
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	69
SetI	ASST	2 cut(s)	142, 240
Sse9I	AATT	4 cut(s)	23, 36, 163, 184
SsiI	CCGC	3 cut(s)	190, 200, 228
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	2 cut(s)	98, 272
TaqI	TCGA	1 cut(s)	285
TasI	AATT	4 cut(s)	23, 36, 163, 184
Tru1I	TTAA	2 cut(s)	15, 152
Tru9I	TTAA	2 cut(s)	15, 152
TspDTI	ATGAA	1 cut(s)	110
XapI	RAATTY	2 cut(s)	23, 163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.