lysine-specific demethylase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G38950 |
| fragaria_vesca | FvH4_2g21290 FvH4_2g21290 |
| malus_domestica | MD05G1195400.v1.1 MD10G1182700.v1.1 |
| prunus_persica | Prupe.8G222100_v2.0.a1 Prupe.8G222100_v2.0.a1 Prupe.8G222100_v2.0.a1 Prupe.8G222100_v2.0.a1 Prupe.8G222100_v2.0.a1 |
| pyrus_communis | pycom05g18270 pycom10g15800 |
| rosa_chinensis | RchiOBHm_Chr6g0287881 |
| rosa_laevigata | RLG00000012459 |
| rosa_multiflora | Rmu_co8423625.1_g000001 Rmu_sc0003163.1_g000002 Rmu_sc0024450.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00180700 Rroxscaffold_7G00180850 |
| rosa_rugosa | Rorug06G0193200 |
| rosa_samantha | Rh6AG293600 Rh6AG302300 Rh6BG308500 Rh6CG301200 Rh6CG316200 Rh6DG300900 |
| rosa_wichuraiana | Rw6G026120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 112 |
| AcuI | CTGAAG | 1 cut(s) | 17 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 149 |
| AgsI | TTSAA | 1 cut(s) | 212 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 99, 131 |
| AluBI | AGCT | 1 cut(s) | 13 |
| AluI | AGCT | 1 cut(s) | 13 |
| Alw26I | GTCTC | 1 cut(s) | 197 |
| AxyI | CCTNAGG | 1 cut(s) | 186 |
| BaeGI | GKGCMC | 1 cut(s) | 59 |
| BauI | CACGAG | 1 cut(s) | 72 |
| BcoDI | GTCTC | 1 cut(s) | 197 |
| BmiI | GGNNCC | 3 cut(s) | 39, 108, 219 |
| BmsI | GCATC | 1 cut(s) | 190 |
| BsaWI | WCCGGW | 1 cut(s) | 149 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 99, 129 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 149 |
| Bse1I | ACTGG | 1 cut(s) | 90 |
| Bse21I | CCTNAGG | 1 cut(s) | 186 |
| BseGI | GGATG | 2 cut(s) | 143, 181 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 149 |
| BseMII | CTCAG | 1 cut(s) | 177 |
| BseNI | ACTGG | 1 cut(s) | 90 |
| BseSI | GKGCMC | 1 cut(s) | 59 |
| BsgI | GTGCAG | 1 cut(s) | 213 |
| BsiSI | CCGG | 1 cut(s) | 150 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 149 |
| BsmAI | GTCTC | 1 cut(s) | 197 |
| Bsp1286I | GDGCHC | 1 cut(s) | 59 |
| Bsp143I | GATC | 1 cut(s) | 20 |
| BspACI | CCGC | 1 cut(s) | 112 |
| BspCNI | CTCAG | 1 cut(s) | 178 |
| BspLI | GGNNCC | 3 cut(s) | 39, 108, 219 |
| BsrI | ACTGG | 1 cut(s) | 90 |
| BssMI | GATC | 1 cut(s) | 20 |
| BssSI | CACGAG | 1 cut(s) | 72 |
| Bst2BI | CACGAG | 1 cut(s) | 72 |
| BstDEI | CTNAG | 1 cut(s) | 186 |
| BstF5I | GGATG | 2 cut(s) | 143, 181 |
| BstKTI | GATC | 1 cut(s) | 23 |
| BstMAI | GTCTC | 1 cut(s) | 197 |
| BstMBI | GATC | 1 cut(s) | 20 |
| BstSLI | GKGCMC | 1 cut(s) | 59 |
| Bsu36I | CCTNAGG | 1 cut(s) | 186 |
| BtsCI | GGATG | 2 cut(s) | 143, 181 |
| CviAII | CATG | 2 cut(s) | 134, 239 |
| CviJI | RGCY | 3 cut(s) | 13, 81, 218 |
| CviKI_1 | RGCY | 3 cut(s) | 13, 81, 218 |
| DdeI | CTNAG | 1 cut(s) | 186 |
| DpnI | GATC | 1 cut(s) | 22 |
| DpnII | GATC | 1 cut(s) | 20 |
| DraI | TTTAAA | 1 cut(s) | 9 |
| Eco57I | CTGAAG | 1 cut(s) | 17 |
| Eco81I | CCTNAGG | 1 cut(s) | 186 |
| FaeI | CATG | 2 cut(s) | 137, 242 |
| FaiI | YATR | 2 cut(s) | 135, 240 |
| FatI | CATG | 2 cut(s) | 133, 238 |
| FauI | CCCGC | 1 cut(s) | 119 |
| FokI | GGATG | 2 cut(s) | 150, 168 |
| HapII | CCGG | 1 cut(s) | 150 |
| Hin1II | CATG | 2 cut(s) | 137, 242 |
| HindIII | AAGCTT | 1 cut(s) | 11 |
| HinfI | GANTC | 3 cut(s) | 86, 146, 205 |
| HpaII | CCGG | 1 cut(s) | 150 |
| Hpy188III | TCNNGA | 5 cut(s) | 35, 118, 143, 185, 209 |
| HpyCH4IV | ACGT | 1 cut(s) | 53 |
| HpyCH4V | TGCA | 1 cut(s) | 194 |
| HpyF3I | CTNAG | 1 cut(s) | 186 |
| HpySE526I | ACGT | 1 cut(s) | 53 |
| Hsp92II | CATG | 2 cut(s) | 137, 242 |
| Kzo9I | GATC | 1 cut(s) | 20 |
| LmnI | GCTCC | 1 cut(s) | 223 |
| LpnPI | CCDG | 7 cut(s) | 20, 96, 103, 156, 163, 198, 234 |
| LweI | GCATC | 1 cut(s) | 190 |
| MaeII | ACGT | 1 cut(s) | 53 |
| MaeIII | GTNAC | 3 cut(s) | 67, 127, 166 |
| MalI | GATC | 1 cut(s) | 22 |
| MboI | GATC | 1 cut(s) | 20 |
| MboII | GAAGA | 1 cut(s) | 8 |
| MhlI | GDGCHC | 1 cut(s) | 59 |
| MlyI | GAGTC | 1 cut(s) | 199 |
| MnlI | CCTC | 4 cut(s) | 125, 181, 235, 240 |
| MseI | TTAA | 1 cut(s) | 8 |
| MspI | CCGG | 1 cut(s) | 150 |
| NdeII | GATC | 1 cut(s) | 20 |
| NlaIII | CATG | 2 cut(s) | 137, 242 |
| NlaIV | GGNNCC | 3 cut(s) | 39, 108, 219 |
| PfeI | GAWTC | 2 cut(s) | 86, 146 |
| PleI | GAGTC | 1 cut(s) | 199 |
| PpsI | GAGTC | 1 cut(s) | 199 |
| PspN4I | GGNNCC | 3 cut(s) | 39, 108, 219 |
| SaqAI | TTAA | 1 cut(s) | 8 |
| Sau3AI | GATC | 1 cut(s) | 20 |
| SchI | GAGTC | 1 cut(s) | 199 |
| SduI | GDGCHC | 1 cut(s) | 59 |
| SetI | ASST | 7 cut(s) | 15, 56, 127, 168, 179, 246, 251 |
| SfaNI | GCATC | 1 cut(s) | 190 |
| SsiI | CCGC | 1 cut(s) | 112 |
| TaiI | ACGT | 1 cut(s) | 56 |
| TaqI | TCGA | 1 cut(s) | 19 |
| TfiI | GAWTC | 2 cut(s) | 86, 146 |
| Tru1I | TTAA | 1 cut(s) | 8 |
| Tru9I | TTAA | 1 cut(s) | 8 |