Rroxscaffold_7G00180700

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006341
Physical Location & Seq
Reverse (-)
20016351 .. 20021186
4836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180700.1

Sequence Viewer

Length: 2589 bp
ATGAAAAACAATTCGGTTCCACCTGGTTTTGCGCCTCGTACTTCCTTCAAGCTGAAGAGGGCGGAAGTCTCTGTTGTGGGAGTTGAAGAAACCGATAGGTCCAATGCTGTTGTGGATACTTCCAAGCAAGGGCCAATCCAAATGGACACAACATCTGACATGACTGCCTTGGAGAAGGTCAAAACATTTCTTCACAATAGGCCATGGTTGCTTTTCGACCAAAATGATCACACTTCAGTGCAATCTGCCCCACAACAGTTTCATATGGTTTATTCTTCCCTCCTTCCCCTTTTGTCAGTAACAGAAAGGTGGCATCCTGAGGGTGCAGTAATAGACGTTCTTCAAAAGGCTCCTGTTTTCTATCCAACACCTGAGGAATTTAAGGACACTCTTAAGTATGTTACAAGTATAAGTGCAAGAGCAGCACAATATGGTATCTGTCGTATTAATCCTCCTCCTTCCTGGAAACCTCCATCCCTTATTGAGGAAAACAGCATGTGGAATAGTTCCACATTTGCTCCCCATATTCAGCGGATTGATGGGCTGCGGAGTAAAATGGATGGCTCTGATGAGAGCACAAAAAAGAAGAGAAGAATCTCGACAGTGGGTTCGGACTCTGGATTTGAATCTACCTCAAGTCTGGGTGAAACAGGACAGTCTGATGTCAATTGCTTTGAATCGGAACCTGGTCCAGAATTCACTCTTGACAGTTTTAAGAGGTATGCAGATGATTTCAAGCATCAGTATTTATGCAAAAGTGACGTCATAGGAAATCAAGAGCAGTGGGAGCCATCAGTGGAGAATATTGAAGCTGAATATAAACGTATCATTGAAAACCCAACTGAAGGAATCGAGGTGCTTTGTGGAAATTATTTGGAGACTAAAGCGTTTGGCAGTGGATTTCCAACAGTATCACAGGATTCCAATCCTTTGGAAACATCAGATTACCCTGATTGCTTGCCATCTGGCTGGAATTTAAATAATCTACCCAGACTCCCTGGTTCTCTTCTTTCTTTTGAAAGCCATGACACATATTGCAATTTTGACGAGTTATTGATGTACTTTGAAAGAGTTGAAGAGCACCACTTATACTCATTGTGTTACAATCATCTGGGTGCTCCTAAAGTTTGGTATGGTGTCCCTGGGAAATCCCGCATAAATTTTGAGGCAGCCATGAGGAAGTCCTTTCCAGATTTAATAAAACAGCATAGGCTGCGTCCTGGAGAGTTTGTTCTTGTCTTCCCTGGAGCTTATCATTCAGAATTTGATTGTGGCTTTAATTTTTCTGAGAGTGCATGTTTTGCTCCTCTAGACTGGTTGCCTCATGGACAGAATGCTGTTGAACTTTACTCTGAACAGGGGAGGAAAACAGCTATATCCTATGATAAGGTGTTGCTTGGAGCAGCTAGGGAAGCTGTAAGGGCACAATGGGAAATTTCACTGTTGAAGAAGAACAAAAACTCAGAGAATTTACGCTGGAAAAATGCCTGCTTAAAGGATGGGATCTTAACAGAAGCACTCAAGTTGCGTCTCAAGTCTGAAGAGATTCGAAGGAAATATTTTTGCACCTCTTTGAAGTCACAGAGGATGAATTCAGATTTTGATGCTACCATGAAAAGGGAATGCAGCATTTGTTTCTGCGATCTTCATTTCTCTGCAGTAGGTTGTCCTTGTTCTGTAGACAGATACTCATGTCTGTTTCATGCAAAGCAGTTCTGTTTTTGTCCTTGGAGTAACAAGTTTTTCCTCTACCGTCATGAAATCAGCGAGCTAAATCTACTTGTTGAAGCTTTGGAAGGAAAATTAAGTGCAGTCATCAAATGGGCGAAAGATGATCTTGGCCTGTATTTGCATGAACATCTTCCCAAAAGCAATGCACAATCACCTGGGCAGGTAGATAATCCCATCTCTCTCACTGATAAAATAAAGCTGAAACAGTACACATCAGAAGATATAACGCCACCGATTTTCAGTTGTGACACTGGTCCCATTTATCTCACTGATAAAAGAAAGCTGAAACAGTACACATTGGAAGATATATCGCCACCGATTTTGGGTTTTGGCTCTGCTTCTAGCATAAAGGCGGAATTGAAGGCACGTATGCTGCAATCCACAATTTCAAACATGTTGAAAGCAAACGGTAATCCAATAGCATCCCTTGATGCTGCAACCAGTGCTGCTTCTAGCATCAGGGCTGAATTGAAGGCACGTCTCCTGCAATCTTCAATCTCCAACACATTGAAAGGAAATGATAATCCAACAGGATCACTCAATGCTGCAACAGCCAATGGCAATGGTAGAAGTTCTGCTTCTAGCATCGAGGTAGAGATGAAGGCACATGAATTCCAATCAACAATCCCAAATGAATATAAAGGCGTGTGCACTCCGCAACAGCCAGTGGCAGCGGTAGAAACTCCTATTCTGCCTATAGAGGTGGCCTCCGATGTTTCATCTGTAACTTCAAGTGAATCATCCTCGGAATCTGATGATATAATACCAGATCTTGGCAAGCTTTCAGAAGCTAGTCATCAAGCAGAAAGTACGGCACCTCTACACATTCATATTCTTAGTGATGACAGTGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034720 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
JmjC JmjN zf-C5HC2

Protein Analysis

862

Amino Acids

96.06

Weight (kDa)

5.6

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjN PF02375 118 - 151 6e-14 jmjN domain
JmjC PF02373 357 - 433 1.3e-13 JmjC domain, hydroxylase
zf-C5HC2 PF02928 542 - 592 9.9e-14 C5HC2 zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 765
Acc36I ACCTGC 1 cut(s) 1882
AccB1I GGYRCC 1 cut(s) 2545
AccB7I CCANNNNNTGG 1 cut(s) 2504
AccI GTMKAC 1 cut(s) 1680
AciI CCGC 7 cut(s) 62, 532, 547, 1153, 2084, 2387, 2405
AclWI GGATC 2 cut(s) 1511, 2272
AcsI RAATTY 9 cut(s) 377, 695, 973, 1159, 1262, 1434, 1468, 1591, 2342
AcuI CTGAAG 4 cut(s) 74, 219, 864, 1560
AcyI GRCGYC 1 cut(s) 762
AfaI GTAC 5 cut(s) 40, 1061, 1940, 2024, 2542
AfiI CCNNNNNNNGG 6 cut(s) 129, 484, 845, 1617, 2054, 2504
AflII CTTAAG 1 cut(s) 392
AflIII ACRYGT 1 cut(s) 2124
AjiI CACGTC 1 cut(s) 2210
AjnI CCWGG 8 cut(s) 22, 461, 685, 997, 1141, 1219, 1243, 1885
AleI CACNNNNGTG 1 cut(s) 236
AloI GAACNNNNNNTCC 2 cut(s) 1215, 1247
Alw21I GWGCWC 4 cut(s) 578, 1083, 1120, 2384
Alw26I GTCTC 4 cut(s) 73, 872, 1535, 2216
Alw44I GTGCAC 1 cut(s) 2380
AlwI GGATC 2 cut(s) 1511, 2272
AoxI GGCC 4 cut(s) 131, 200, 1840, 2436
ApaLI GTGCAC 1 cut(s) 2380
ApoI RAATTY 9 cut(s) 377, 695, 973, 1159, 1262, 1434, 1468, 1591, 2342
ArsI GACNNNNNNTTYG 6 cut(s) 592, 605, 624, 637, 747, 779
AseI ATTAAT 1 cut(s) 447
Asp700I GAANNNNTTC 2 cut(s) 1545, 1860
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 4 cut(s) 99, 131, 689, 1985
AsuHPI GGTGA 2 cut(s) 656, 1875
AsuII TTCGAA 1 cut(s) 1549
AvaII GGWCC 3 cut(s) 99, 689, 1985
AxyI CCTNAGG 2 cut(s) 318, 372
BaeGI GKGCMC 2 cut(s) 1426, 2384
BaeI ACNNNNGTAYC 2 cut(s) 1678, 1711
BanI GGYRCC 1 cut(s) 2545
BbsI GAAGAC 1 cut(s) 1231
Bbv12I GWGCWC 4 cut(s) 578, 1083, 1120, 2384
BccI CCATC 8 cut(s) 481, 533, 554, 799, 970, 1493, 1913, 2576
BceAI ACGGC 1 cut(s) 2559
BciT130I CCWGG 8 cut(s) 24, 463, 687, 999, 1143, 1221, 1245, 1887
BciVI GTATCC 1 cut(s) 109
BclI TGATCA 1 cut(s) 226
BcoDI GTCTC 4 cut(s) 73, 872, 1535, 2216
BfaI CTAG 6 cut(s) 1310, 1407, 2073, 2184, 2313, 2523
BfmI CTRYAG 3 cut(s) 1656, 1677, 2427
BfrI CTTAAG 1 cut(s) 392
BfuAI ACCTGC 1 cut(s) 1882
BfuI GTATCC 1 cut(s) 109
BglII AGATCT 1 cut(s) 2500
Bme1390I CCNGG 8 cut(s) 24, 463, 687, 999, 1143, 1221, 1245, 1887
Bme18I GGWCC 3 cut(s) 99, 689, 1985
BmgBI CACGTC 1 cut(s) 2210
BmgT120I GGNCC 4 cut(s) 99, 131, 689, 1985
BmiI GGNNCC 6 cut(s) 18, 351, 684, 789, 1987, 2547
BmrFI CCNGG 8 cut(s) 24, 463, 687, 999, 1143, 1221, 1245, 1887
BmsI GCATC 7 cut(s) 322, 748, 1594, 2152, 2162, 2196, 2325
BoxI GACNNNNGTC 1 cut(s) 1983
BpiI GAAGAC 1 cut(s) 1231
BplI GAGNNNNNCTC 2 cut(s) 2423, 2455
BpmI CTGGAG 2 cut(s) 1242, 1266
Bpu14I TTCGAA 1 cut(s) 1549
BpuEI CTTGAG 3 cut(s) 619, 1505, 1517
BsaAI YACGTR 1 cut(s) 2099
BsaBI GATNNNNATC 2 cut(s) 625, 924
BsaHI GRCGYC 1 cut(s) 762
BsaJI CCNNGG 9 cut(s) 168, 203, 997, 1141, 1142, 1243, 1727, 1886, 2475
BsaXI ACNNNNNCTCC 6 cut(s) 502, 532, 978, 1008, 1215, 1245
Bsc4I CCNNNNNNNGG 6 cut(s) 129, 484, 845, 1617, 2054, 2504
Bse1I ACTGG 4 cut(s) 1319, 1987, 2172, 2396
Bse21I CCTNAGG 2 cut(s) 318, 372
Bse3DI GCAATG 2 cut(s) 1879, 2299
Bse8I GATNNNNATC 2 cut(s) 625, 924
BseBI CCWGG 8 cut(s) 24, 463, 687, 999, 1143, 1221, 1245, 1887
BseDI CCNNGG 9 cut(s) 168, 203, 997, 1141, 1142, 1243, 1727, 1886, 2475
BseGI GGATG 7 cut(s) 313, 473, 565, 1504, 1593, 2153, 2471
BseJI GATNNNNATC 2 cut(s) 625, 924
BseLI CCNNNNNNNGG 6 cut(s) 129, 484, 845, 1617, 2054, 2504
BseMI GCAATG 2 cut(s) 1879, 2299
BseMII CTCAG 4 cut(s) 309, 363, 1278, 1476
BseNI ACTGG 4 cut(s) 1319, 1987, 2172, 2396
BseRI GAGGAG 2 cut(s) 444, 1296
BseSI GKGCMC 2 cut(s) 1426, 2384
BsgI GTGCAG 2 cut(s) 345, 1830
BshFI GGCC 4 cut(s) 133, 202, 1842, 2438
BshNI GGYRCC 1 cut(s) 2545
BsiHKAI GWGCWC 4 cut(s) 578, 1083, 1120, 2384
BslFI GGGAC 2 cut(s) 1124, 1971
BslI CCNNNNNNNGG 6 cut(s) 129, 484, 845, 1617, 2054, 2504
BsmAI GTCTC 4 cut(s) 73, 872, 1535, 2216
BsmBI CGTCTC 2 cut(s) 1535, 2216
BsmFI GGGAC 2 cut(s) 1124, 1971
BsmI GAATGC 2 cut(s) 1339, 1628
BsnI GGCC 4 cut(s) 133, 202, 1842, 2438
Bsp119I TTCGAA 1 cut(s) 1549
Bsp1286I GDGCHC 5 cut(s) 578, 1083, 1120, 1426, 2384
Bsp143I GATC 6 cut(s) 226, 1503, 1642, 1834, 2264, 2500
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 7 cut(s) 62, 532, 547, 1153, 2084, 2387, 2405
BspANI GGCC 4 cut(s) 133, 202, 1842, 2438
BspCNI CTCAG 4 cut(s) 310, 364, 1279, 1475
BspHI TCATGA 1 cut(s) 1756
BspLI GGNNCC 6 cut(s) 18, 351, 684, 789, 1987, 2547
BspMAI CTGCAG 1 cut(s) 1660
BspMI ACCTGC 1 cut(s) 1882
BspPI GGATC 2 cut(s) 1511, 2272
BspQI GCTCTTC 1 cut(s) 1071
BspT104I TTCGAA 1 cut(s) 1549
BspT107I GGYRCC 1 cut(s) 2545
BspTI CTTAAG 1 cut(s) 392
BsrDI GCAATG 2 cut(s) 1879, 2299
BsrI ACTGG 4 cut(s) 1319, 1987, 2172, 2396
BssECI CCNNGG 9 cut(s) 168, 203, 997, 1141, 1142, 1243, 1727, 1886, 2475
BssMI GATC 6 cut(s) 226, 1503, 1642, 1834, 2264, 2500
BssNI GRCGYC 1 cut(s) 762
BssT1I CCWWGG 3 cut(s) 168, 203, 1727
Bst2UI CCWGG 8 cut(s) 24, 463, 687, 999, 1143, 1221, 1245, 1887
Bst6I CTCTTC 5 cut(s) 50, 581, 1011, 1071, 1536
BstACI GRCGYC 1 cut(s) 762
BstAFI CTTAAG 1 cut(s) 392
BstAPI GCANNNNNTGC 3 cut(s) 1213, 1301, 2174
BstBAI YACGTR 1 cut(s) 2099
BstBI TTCGAA 1 cut(s) 1549
BstC8I GCNNGC 4 cut(s) 959, 1489, 1769, 2510
BstDEI CTNAG 5 cut(s) 318, 372, 1287, 1462, 2567
BstDSI CCRYGG 1 cut(s) 203
BstENI CCTNNNNNAGG 1 cut(s) 482
BstF5I GGATG 7 cut(s) 313, 473, 565, 1504, 1593, 2153, 2471
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 6 cut(s) 229, 1506, 1645, 1837, 2267, 2503
BstMAI GTCTC 4 cut(s) 73, 872, 1535, 2216
BstMBI GATC 6 cut(s) 226, 1503, 1642, 1834, 2264, 2500
BstMWI GCNNNNNNNGC 9 cut(s) 208, 422, 787, 1213, 1301, 1412, 1421, 2174, 2282
BstNI CCWGG 8 cut(s) 24, 463, 687, 999, 1143, 1221, 1245, 1887
BstNSI RCATGY 3 cut(s) 499, 1299, 2128
BstPAI GACNNNNGTC 1 cut(s) 1983
BstSCI CCNGG 8 cut(s) 22, 461, 685, 997, 1141, 1219, 1243, 1885
BstSFI CTRYAG 3 cut(s) 1656, 1677, 2427
BstSLI GKGCMC 2 cut(s) 1426, 2384
BstV2I GAAGAC 1 cut(s) 1231
BstX2I RGATCY 2 cut(s) 1503, 2500
BstXI CCANNNNNNTGG 2 cut(s) 931, 969
BstYI RGATCY 2 cut(s) 1503, 2500
Bsu36I CCTNAGG 2 cut(s) 318, 372
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 4 cut(s) 133, 202, 1842, 2438
BtgI CCRYGG 1 cut(s) 203
BtrI CACGTC 1 cut(s) 2210
BtsCI GGATG 7 cut(s) 313, 473, 565, 1504, 1593, 2153, 2471
BtsI GCAGTG 2 cut(s) 788, 901
BveI ACCTGC 1 cut(s) 1882
Cac8I GCNNGC 4 cut(s) 959, 1489, 1769, 2510
CciI TCATGA 1 cut(s) 1756
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 4 cut(s) 99, 131, 689, 1985
CseI GACGC 2 cut(s) 1205, 1517
CsiI ACCWGGT 2 cut(s) 22, 685
Csp6I GTAC 5 cut(s) 39, 1060, 1939, 2023, 2541
CspCI CAANNNNNGTGG 4 cut(s) 764, 799, 2034, 2069
CviQI GTAC 5 cut(s) 39, 1060, 1939, 2023, 2541
DdeI CTNAG 5 cut(s) 318, 372, 1287, 1462, 2567
DpnI GATC 6 cut(s) 228, 1505, 1644, 1836, 2266, 2502
DpnII GATC 6 cut(s) 226, 1503, 1642, 1834, 2264, 2500
DraI TTTAAA 1 cut(s) 978
Eam1104I CTCTTC 5 cut(s) 50, 581, 1011, 1071, 1536
EarI CTCTTC 5 cut(s) 50, 581, 1011, 1071, 1536
EciI GGCGGA 2 cut(s) 77, 2099
Eco130I CCWWGG 3 cut(s) 168, 203, 1727
Eco47I GGWCC 3 cut(s) 99, 689, 1985
Eco57I CTGAAG 4 cut(s) 74, 219, 864, 1560
Eco81I CCTNAGG 2 cut(s) 318, 372
EcoNI CCTNNNNNAGG 1 cut(s) 482
EcoRI GAATTC 3 cut(s) 695, 1591, 2342
EcoRII CCWGG 8 cut(s) 22, 461, 685, 997, 1141, 1219, 1243, 1885
EcoT14I CCWWGG 3 cut(s) 168, 203, 1727
ErhI CCWWGG 3 cut(s) 168, 203, 1727
Esp3I CGTCTC 2 cut(s) 1535, 2216
FalI AAGNNNNNCTT 4 cut(s) 1821, 1853, 2293, 2325
FaqI GGGAC 2 cut(s) 1124, 1971
FauI CCCGC 1 cut(s) 1160
FauNDI CATATG 1 cut(s) 264
FbaI TGATCA 1 cut(s) 226
FblI GTMKAC 1 cut(s) 1680
FokI GGATG 7 cut(s) 300, 460, 572, 1511, 1600, 2140, 2458
FspBI CTAG 6 cut(s) 1310, 1407, 2073, 2184, 2313, 2523
GlaI GCGC 1 cut(s) 33
GsuI CTGGAG 2 cut(s) 1242, 1266
HaeIII GGCC 4 cut(s) 133, 202, 1842, 2438
HgaI GACGC 2 cut(s) 1205, 1517
HhaI GCGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 762
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HindIII AAGCTT 2 cut(s) 1788, 2510
HphI GGTGA 2 cut(s) 656, 1875
Hpy166II GTNNAC 4 cut(s) 1681, 1941, 2025, 2382
Hpy188III TCNNGA 9 cut(s) 317, 598, 618, 692, 704, 776, 1190, 1310, 1757
Hpy8I GTNNAC 4 cut(s) 1681, 1941, 2025, 2382
HpyCH4IV ACGT 5 cut(s) 336, 762, 823, 2098, 2209
HpyF10VI GCNNNNNNNGC 9 cut(s) 208, 422, 787, 1213, 1301, 1412, 1421, 2174, 2282
HpyF3I CTNAG 5 cut(s) 318, 372, 1287, 1462, 2567
HpySE526I ACGT 5 cut(s) 336, 762, 823, 2098, 2209
Hsp92I GRCGYC 1 cut(s) 762
HspAI GCGC 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 6 cut(s) 226, 1503, 1642, 1834, 2264, 2500
LguI GCTCTTC 1 cut(s) 1071
LmnI GCTCC 7 cut(s) 355, 523, 787, 1123, 1247, 1309, 1400
LweI GCATC 7 cut(s) 322, 748, 1594, 2152, 2162, 2196, 2325
MabI ACCWGGT 2 cut(s) 22, 685
MaeI CTAG 6 cut(s) 1310, 1407, 2073, 2184, 2313, 2523
MaeII ACGT 5 cut(s) 336, 762, 823, 2098, 2209
MaeIII GTNAC 8 cut(s) 298, 400, 758, 1100, 1578, 1733, 1976, 2455
MalI GATC 6 cut(s) 228, 1505, 1644, 1836, 2266, 2502
MboI GATC 6 cut(s) 226, 1503, 1642, 1834, 2264, 2500
MfeI CAATTG 1 cut(s) 667
MflI RGATCY 2 cut(s) 1503, 2500
MhlI GDGCHC 5 cut(s) 578, 1083, 1120, 1426, 2384
MlyI GAGTC 2 cut(s) 608, 987
MmeI TCCRAC 4 cut(s) 389, 929, 2256, 2282
MroXI GAANNNNTTC 2 cut(s) 1545, 1860
MslI CAYNNNNRTG 2 cut(s) 236, 1113
MspA1I CMGCKG 2 cut(s) 532, 2405
MspCI CTTAAG 1 cut(s) 392
MspR9I CCNGG 8 cut(s) 24, 463, 687, 999, 1143, 1221, 1245, 1887
MunI CAATTG 1 cut(s) 667
Mva1269I GAATGC 2 cut(s) 1339, 1628
MvaI CCWGG 8 cut(s) 24, 463, 687, 999, 1143, 1221, 1245, 1887
MwoI GCNNNNNNNGC 9 cut(s) 208, 422, 787, 1213, 1301, 1412, 1421, 2174, 2282
NcoI CCATGG 1 cut(s) 203
NdeI CATATG 1 cut(s) 264
NdeII GATC 6 cut(s) 226, 1503, 1642, 1834, 2264, 2500
NlaIV GGNNCC 6 cut(s) 18, 351, 684, 789, 1987, 2547
NmuCI GTSAC 3 cut(s) 758, 1578, 1976
NspI RCATGY 3 cut(s) 499, 1299, 2128
NspV TTCGAA 1 cut(s) 1549
OliI CACNNNNGTG 1 cut(s) 236
PagI TCATGA 1 cut(s) 1756
PasI CCCWGGG 1 cut(s) 1142
PciI ACATGT 1 cut(s) 2124
PciSI GCTCTTC 1 cut(s) 1071
PctI GAATGC 2 cut(s) 1339, 1628
PdmI GAANNNNTTC 2 cut(s) 1545, 1860
PfeI GAWTC 8 cut(s) 594, 626, 677, 849, 920, 1546, 2468, 2480
PflMI CCANNNNNTGG 1 cut(s) 2504
PfoI TCCNGGA 2 cut(s) 461, 1219
PleI GAGTC 2 cut(s) 608, 987
PpsI GAGTC 2 cut(s) 608, 987
Ppu21I YACGTR 1 cut(s) 2099
PscI ACATGT 1 cut(s) 2124
PshAI GACNNNNGTC 1 cut(s) 1983
PshBI ATTAAT 1 cut(s) 447
Psp6I CCWGG 8 cut(s) 22, 461, 685, 997, 1141, 1219, 1243, 1885
PspGI CCWGG 8 cut(s) 22, 461, 685, 997, 1141, 1219, 1243, 1885
PspN4I GGNNCC 6 cut(s) 18, 351, 684, 789, 1987, 2547
PspPI GGNCC 4 cut(s) 99, 131, 689, 1985
PsrI GAACNNNNNNTAC 2 cut(s) 321, 353
PstI CTGCAG 1 cut(s) 1660
PsuI RGATCY 2 cut(s) 1503, 2500
RsaI GTAC 5 cut(s) 40, 1061, 1940, 2024, 2542
RsaNI GTAC 5 cut(s) 39, 1060, 1939, 2023, 2541
RseI CAYNNNNRTG 2 cut(s) 236, 1113
SapI GCTCTTC 1 cut(s) 1071
Sau3AI GATC 6 cut(s) 226, 1503, 1642, 1834, 2264, 2500
Sau96I GGNCC 4 cut(s) 99, 131, 689, 1985
SchI GAGTC 2 cut(s) 608, 987
ScrFI CCNGG 8 cut(s) 24, 463, 687, 999, 1143, 1221, 1245, 1887
SduI GDGCHC 5 cut(s) 578, 1083, 1120, 1426, 2384
SexAI ACCWGGT 2 cut(s) 22, 685
SfaNI GCATC 7 cut(s) 322, 748, 1594, 2152, 2162, 2196, 2325
SfcI CTRYAG 3 cut(s) 1656, 1677, 2427
SfuI TTCGAA 1 cut(s) 1549
SinI GGWCC 3 cut(s) 99, 689, 1985
SmiI ATTTAAAT 1 cut(s) 978
SmiMI CAYNNNNRTG 2 cut(s) 236, 1113
SmlI CTYRAG 4 cut(s) 392, 634, 1520, 1532
SmoI CTYRAG 4 cut(s) 392, 634, 1520, 1532
SsiI CCGC 7 cut(s) 62, 532, 547, 1153, 2084, 2387, 2405
SspI AATATT 2 cut(s) 805, 1559
SspMI CTAG 6 cut(s) 1310, 1407, 2073, 2184, 2313, 2523
StyD4I CCNGG 8 cut(s) 22, 461, 685, 997, 1141, 1219, 1243, 1885
StyI CCWWGG 3 cut(s) 168, 203, 1727
SwaI ATTTAAAT 1 cut(s) 978
TaiI ACGT 5 cut(s) 339, 765, 826, 2101, 2212
TaqI TCGA 5 cut(s) 216, 599, 852, 1549, 2319
TatI WGTACW 3 cut(s) 1059, 1938, 2022
TfiI GAWTC 8 cut(s) 594, 626, 677, 849, 920, 1546, 2468, 2480
TseFI GTSAC 3 cut(s) 758, 1578, 1976
Tsp45I GTSAC 3 cut(s) 758, 1578, 1976
Van91I CCANNNNNTGG 1 cut(s) 2504
Vha464I CTTAAG 1 cut(s) 392
VneI GTGCAC 1 cut(s) 2380
VpaK11BI GGWCC 3 cut(s) 99, 689, 1985
VspI ATTAAT 1 cut(s) 447
XagI CCTNNNNNAGG 1 cut(s) 482
XapI RAATTY 9 cut(s) 377, 695, 973, 1159, 1262, 1434, 1468, 1591, 2342
XbaI TCTAGA 1 cut(s) 1309
XceI RCATGY 3 cut(s) 499, 1299, 2128
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 1680
XmnI GAANNNNTTC 2 cut(s) 1545, 1860
XspI CTAG 6 cut(s) 1310, 1407, 2073, 2184, 2313, 2523
ZraI GACGTC 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.