AT2G39170

Protein MEF2BNB homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006704
Physical Location & Seq
Reverse (-)
16334546 .. 16336297
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39170.1

Sequence Viewer

Length: 696 bp
ATGCATGAGTTCTCTACTGTTGATGGTTTTGCGGAGATAAACGAGAGCTTAGCGGAGATGATAAAGTACATTGCAAATGAACCCTCAGTGGGGCTTTACTACATTCAACAGCACATCCGAAACGCAGCACCGAATGTTATTAATCTCAACAACAACGTTTTGGAGAAGTCCCGTGAAACAGGCTTGCATACCGAAGACTTGGAAGATTCTATAGCCATGGTGAAATCTATGAAAGACTGTGGTTCACCTATTGCTGATGAGATGATAGGAGACATTAAGAACTCTTTAGCGATAATGTCTTCGAAACAACCGAGGAGAGGGGTCATCCTCAACTCCACAAGTCCTTGGAGCAGATCCAGCAGTATAACAACAAGAACGCGTGGTTCTGATAACAGCCAGGATAATAGTGAAAGCAGCAACTATTTCACATCAGTCTTCATGACGGCTAAGGAGAAGGCAAGCAACATCAAATGGCCACAACTTGATTTCAAAGAACAAAAGTCAGAGGCTGACCCCAATGTGCAAAGCAATGAGTTAAAAGAAGAAGAAGAAGAGGACTCAGGGAAAGGTGAACATATTGTGGAGACAACAAAGTTTGAGGAGTTCAAGGCAGGTAAAGAAGCGAGTCTCAAGGCATGGCTTGGAGATATGGATGGGAATGTGGATGTTGGTGGTCGTGTTGCCGAGAGAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BORCS8

Protein Analysis

231

Amino Acids

25.72

Weight (kDa)

4.8

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BORCS8 PF10167 4 - 113 3.4e-32 BLOC-1-related complex sub-unit 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 602
AccII CGCG 1 cut(s) 379
AciI CCGC 2 cut(s) 32, 53
AclI AACGTT 1 cut(s) 156
AclWI GGATC 1 cut(s) 348
AcoI YGGCCR 1 cut(s) 473
AcsI RAATTY 1 cut(s) 690
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 3 cut(s) 89, 90, 317
AflIII ACRYGT 1 cut(s) 377
AgsI TTSAA 3 cut(s) 107, 490, 607
AjnI CCWGG 1 cut(s) 396
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Alw26I GTCTC 3 cut(s) 264, 578, 632
AlwI GGATC 1 cut(s) 348
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 1 cut(s) 473
ApeKI GCWGC 2 cut(s) 125, 414
ApoI RAATTY 1 cut(s) 690
AseI ATTAAT 1 cut(s) 141
AsuHPI GGTGA 3 cut(s) 232, 237, 581
AsuII TTCGAA 1 cut(s) 302
BalI TGGCCA 1 cut(s) 475
BbsI GAAGAC 3 cut(s) 201, 291, 427
BbvI GCAGC 2 cut(s) 137, 426
BccI CCATC 2 cut(s) 17, 647
BceAI ACGGC 1 cut(s) 459
BciT130I CCWGG 1 cut(s) 398
BcoDI GTCTC 3 cut(s) 264, 578, 632
BfmI CTRYAG 1 cut(s) 210
BfuAI ACCTGC 1 cut(s) 602
BisI GCNGC 2 cut(s) 126, 415
BlpI GCTNAGC 1 cut(s) 49
BlsI GCNGC 2 cut(s) 127, 416
Bme1390I CCNGG 1 cut(s) 398
BmrFI CCNGG 1 cut(s) 398
BpiI GAAGAC 3 cut(s) 201, 291, 427
Bpu10I CCTNAGC 1 cut(s) 447
Bpu1102I GCTNAGC 1 cut(s) 49
Bpu14I TTCGAA 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 614
BsaJI CCNNGG 3 cut(s) 216, 311, 344
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 90, 317
Bse3DI GCAATG 2 cut(s) 69, 535
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 3 cut(s) 216, 311, 344
BseGI GGATG 4 cut(s) 114, 324, 658, 670
BseLI CCNNNNNNNGG 3 cut(s) 89, 90, 317
BseMI GCAATG 2 cut(s) 69, 535
BseMII CTCAG 2 cut(s) 99, 573
BseRI GAGGAG 2 cut(s) 328, 614
BseXI GCAGC 2 cut(s) 137, 426
Bsh1236I CGCG 1 cut(s) 379
BshFI GGCC 1 cut(s) 475
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 3 cut(s) 89, 90, 317
BsmAI GTCTC 3 cut(s) 264, 578, 632
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 1 cut(s) 475
Bsp119I TTCGAA 1 cut(s) 302
Bsp143I GATC 1 cut(s) 353
Bsp1720I GCTNAGC 1 cut(s) 49
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 2 cut(s) 32, 53
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 2 cut(s) 98, 572
BspFNI CGCG 1 cut(s) 379
BspHI TCATGA 1 cut(s) 438
BspMI ACCTGC 1 cut(s) 602
BspPI GGATC 1 cut(s) 348
BspT104I TTCGAA 1 cut(s) 302
BsrDI GCAATG 2 cut(s) 69, 535
BssECI CCNNGG 3 cut(s) 216, 311, 344
BssMI GATC 1 cut(s) 353
BssT1I CCWWGG 2 cut(s) 216, 344
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 2 cut(s) 19, 239
Bst6I CTCTTC 1 cut(s) 546
BstBI TTCGAA 1 cut(s) 302
BstC8I GCNNGC 2 cut(s) 185, 460
BstDEI CTNAG 4 cut(s) 49, 85, 447, 559
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 4 cut(s) 114, 324, 658, 670
BstFNI CGCG 1 cut(s) 379
BstKTI GATC 1 cut(s) 356
BstMAI GTCTC 3 cut(s) 264, 578, 632
BstMBI GATC 1 cut(s) 353
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstNI CCWGG 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 396
BstSFI CTRYAG 1 cut(s) 210
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 137, 426
BstV2I GAAGAC 3 cut(s) 201, 291, 427
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuRI GGCC 1 cut(s) 475
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 4 cut(s) 114, 324, 658, 670
BtsIMutI CAGTG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 602
Cac8I GCNNGC 2 cut(s) 185, 460
CaiI CAGNNNCTG 1 cut(s) 509
CciI TCATGA 1 cut(s) 438
Csp6I GTAC 1 cut(s) 67
CviAII CATG 4 cut(s) 5, 217, 439, 636
CviJI RGCY 9 cut(s) 48, 94, 183, 215, 396, 446, 475, 509, 640
CviKI_1 RGCY 9 cut(s) 48, 94, 183, 215, 396, 446, 475, 509, 640
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 4 cut(s) 49, 85, 447, 559
DpnI GATC 1 cut(s) 355
DpnII GATC 1 cut(s) 353
EaeI YGGCCR 1 cut(s) 473
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Eco130I CCWWGG 2 cut(s) 216, 344
EcoRII CCWGG 1 cut(s) 396
EcoT14I CCWWGG 2 cut(s) 216, 344
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 216, 344
FaeI CATG 4 cut(s) 8, 220, 442, 639
FaqI GGGAC 1 cut(s) 154
FatI CATG 4 cut(s) 4, 216, 438, 635
Fnu4HI GCNGC 2 cut(s) 126, 415
FokI GGATG 4 cut(s) 101, 311, 665, 677
Fsp4HI GCNGC 2 cut(s) 126, 415
GluI GCNGC 2 cut(s) 126, 415
HaeIII GGCC 1 cut(s) 475
Hin1II CATG 4 cut(s) 8, 220, 442, 639
HinfI GANTC 3 cut(s) 206, 557, 625
HphI GGTGA 3 cut(s) 232, 237, 581
Hpy166II GTNNAC 2 cut(s) 245, 572
Hpy188I TCNGA 3 cut(s) 119, 388, 505
Hpy188III TCNNGA 1 cut(s) 439
Hpy8I GTNNAC 2 cut(s) 245, 572
HpyAV CCTTC 1 cut(s) 448
HpyCH4III ACNGT 2 cut(s) 19, 239
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 4 cut(s) 4, 74, 187, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 4 cut(s) 49, 85, 447, 559
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 4 cut(s) 8, 220, 442, 639
Kzo9I GATC 1 cut(s) 353
LmnI GCTCC 1 cut(s) 348
LpnPI CCDG 6 cut(s) 165, 370, 383, 410, 546, 597
Lsp1109I GCAGC 2 cut(s) 137, 426
MaeII ACGT 1 cut(s) 156
MalI GATC 1 cut(s) 355
MboI GATC 1 cut(s) 353
MboII GAAGA 8 cut(s) 206, 215, 291, 427, 554, 557, 560, 563
MflI RGATCY 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 475
MluCI AATT 1 cut(s) 690
MluI ACGCGT 1 cut(s) 377
MluNI TGGCCA 1 cut(s) 475
MlyI GAGTC 2 cut(s) 551, 634
MnlI CCTC 7 cut(s) 94, 306, 311, 338, 499, 547, 592
Mox20I TGGCCA 1 cut(s) 475
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 475
MseI TTAA 3 cut(s) 141, 276, 536
Msp20I TGGCCA 1 cut(s) 475
MspR9I CCNGG 1 cut(s) 398
MvaI CCWGG 1 cut(s) 398
MvnI CGCG 1 cut(s) 379
MwoI GCNNNNNNNGC 1 cut(s) 357
NcoI CCATGG 1 cut(s) 216
NdeII GATC 1 cut(s) 353
NlaIII CATG 4 cut(s) 8, 220, 442, 639
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 302
PagI TCATGA 1 cut(s) 438
PcsI WCGNNNNNNNCGW 1 cut(s) 308
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 2 cut(s) 127, 416
PleI GAGTC 2 cut(s) 551, 633
PpsI GAGTC 2 cut(s) 551, 633
PshBI ATTAAT 1 cut(s) 141
Psp1406I AACGTT 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 396
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 1 cut(s) 353
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SaqAI TTAA 3 cut(s) 141, 276, 536
SatI GCNGC 2 cut(s) 126, 415
Sau3AI GATC 1 cut(s) 353
SchI GAGTC 2 cut(s) 551, 634
ScrFI CCNGG 1 cut(s) 398
SetI ASST 5 cut(s) 50, 159, 250, 571, 616
SfcI CTRYAG 1 cut(s) 210
SfuI TTCGAA 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 1 cut(s) 690
SsiI CCGC 2 cut(s) 32, 53
StyD4I CCNGG 1 cut(s) 396
StyI CCWWGG 2 cut(s) 216, 344
TaaI ACNGT 2 cut(s) 19, 239
TaiI ACGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 302
TasI AATT 1 cut(s) 690
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 3 cut(s) 141, 276, 536
Tru9I TTAA 3 cut(s) 141, 276, 536
TscAI CASTG 1 cut(s) 93
TseI GCWGC 2 cut(s) 125, 414
TspDTI ATGAA 3 cut(s) 93, 245, 427
TspRI CASTG 1 cut(s) 93
VspI ATTAAT 1 cut(s) 141
XapI RAATTY 1 cut(s) 690
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.