Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015670.1

Orthogroup ID

OG0006704

Physical Location & Seq

Genomic Coordinates Reverse (-)

9619 .. 10401

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015670.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atgcatggattctccaccgtcgacggctttgtggagataactgaatgcttgggagagatgattaagtatgtggcaaacgaaccctcagtggggcttttttatgttcagcagcacactcaaaatgccgtgcccaatctcgttggtctcagaaataatgttgtgaacaagtcgcgtgaaacaactttgcacactgaagattctgaggattccataaccatggtgagatcgatgaaagaatgtggattccccgttgctgatgagatgattagggacataaagaaatctcttgtacttatgtctacaaaacaaccaaaaagagggctaatcgacaaccagggatccgcttttcagctgggaagaggaagttcttggaaaccagccagttggggtcgttcaccgagtgttgcccagcaggatagtgcaggcagttatttttccactgtattaaaatctgcaagacaaaaggccagcaatttgaagtggccgcaacttgatcctaaagaactaacagatgtcgcctcctactctaacccaccagtatcagttgctactgcaagcactagttcgtctctgccagatacagaagctgatgagctgcccttgtcgagtcatattacagatgaaccgcaagaagaacaagttgatgagagcttgtcgacacataatttgtcttcattgtcagaaaactttgatgagttcaaggctgataaagaagttaaactacgagagtggttggaagggaccgacaatctagttaatcccggaggagcaagtgatgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BORCS8

Protein Analysis

260

Amino Acids

28.48

Weight (kDa)

4.79

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39170
fragaria_vesca	FvH4_7g18740 FvH4_7g18740 FvH4_7g18740
malus_domestica	MD01G1102900.v1.1
prunus_persica	Prupe.2G208500_v2.0.a1
pyrus_communis	pycom01g12940 pycom07g16340
rosa_chinensis	RchiOBHm_Chr1g0362511 RchiOBHm_Chr1g0384391
rosa_laevigata	RLG00000027640
rosa_multiflora	Rmu_sc0005725.1_g000003 Rmu_sc0015670.1_g000002 Rmu_sc0016737.1_g000010
rosa_roxburghii	Rroxscaffold_4G00294000
rosa_rugosa	Rorug01G0298700
rosa_samantha	Rh1AG308000 Rh1AG472700 Rh1BG271100 Rh1BG430500 Rh1CG288900 Rh1CG443500 Rh1DG301400 Rh1DG463100
rosa_wichuraiana	Rw1G027330 Rw1G039980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	21, 299, 656
AccII	CGCG	1 cut(s)	172
AciI	CCGC	3 cut(s)	342, 485, 626
AclWI	GGATC	3 cut(s)	333, 346, 488
AcoI	YGGCCR	1 cut(s)	482
AcuI	CTGAAG	1 cut(s)	213
AdeI	CACNNNGTG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	3 cut(s)	89, 90, 317
AgsI	TTSAA	2 cut(s)	478, 700
AhlI	ACTAGT	1 cut(s)	560
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	4 cut(s)	352, 587, 595, 651
AluI	AGCT	4 cut(s)	352, 587, 595, 651
Alw26I	GTCTC	2 cut(s)	149, 573
AlwI	GGATC	3 cut(s)	333, 346, 488
AlwNI	CAGNNNCTG	1 cut(s)	587
AoxI	GGCC	2 cut(s)	465, 482
ApeKI	GCWGC	2 cut(s)	109, 595
ArsI	GACNNNNNNTTYG	2 cut(s)	649, 681
AspS9I	GGNCC	1 cut(s)	741
AsuC2I	CCSGG	1 cut(s)	762
AsuHPI	GGTGA	2 cut(s)	232, 387
AvaII	GGWCC	1 cut(s)	741
BaeGI	GKGCMC	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	338
BarI	GAAGNNNNNNTAC	2 cut(s)	705, 737
BbsI	GAAGAC	1 cut(s)	663
BbvI	GCAGC	2 cut(s)	121, 582
BceAI	ACGGC	2 cut(s)	40, 110
BciT130I	CCWGG	1 cut(s)	335
BcnI	CCSGG	1 cut(s)	762
BcoDI	GTCTC	2 cut(s)	149, 573
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	2 cut(s)	561, 752
BisI	GCNGC	3 cut(s)	110, 485, 596
BlsI	GCNGC	3 cut(s)	111, 486, 597
Bme1390I	CCNGG	2 cut(s)	335, 762
Bme18I	GGWCC	1 cut(s)	741
BmgT120I	GGNCC	1 cut(s)	741
BmiI	GGNNCC	2 cut(s)	340, 742
BmrFI	CCNGG	2 cut(s)	335, 762
BmsI	GCATC	1 cut(s)	766
BpiI	GAAGAC	1 cut(s)	663
BpuMI	CCSGG	1 cut(s)	762
Bsa29I	ATCGAT	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	216, 334
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 90, 317
Bse1I	ACTGG	2 cut(s)	381, 536
BseBI	CCWGG	1 cut(s)	335
BseCI	ATCGAT	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	216, 334
BseLI	CCNNNNNNNGG	3 cut(s)	89, 90, 317
BseMII	CTCAG	3 cut(s)	99, 160, 192
BseNI	ACTGG	2 cut(s)	381, 536
BseRI	GAGGAG	1 cut(s)	780
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	2 cut(s)	121, 582
BseYI	CCCAGC	2 cut(s)	352, 408
BsgI	GTGCAG	1 cut(s)	441
Bsh1236I	CGCG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	467, 484
BshVI	ATCGAT	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	762
BslFI	GGGAC	2 cut(s)	284, 754
BslI	CCNNNNNNNGG	3 cut(s)	89, 90, 317
BsmAI	GTCTC	2 cut(s)	149, 573
BsmBI	CGTCTC	1 cut(s)	573
BsmFI	GGGAC	2 cut(s)	284, 754
BsmI	GAATGC	1 cut(s)	50
BsnI	GGCC	2 cut(s)	467, 484
Bso31I	GGTCTC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	224, 338, 493
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	3 cut(s)	342, 485, 626
BspANI	GGCC	2 cut(s)	467, 484
BspCNI	CTCAG	3 cut(s)	98, 159, 193
BspDI	ATCGAT	1 cut(s)	227
BspFNI	CGCG	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	340, 742
BspPI	GGATC	3 cut(s)	333, 346, 488
BspTNI	GGTCTC	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	381, 536
BssECI	CCNNGG	2 cut(s)	216, 334
BssMI	GATC	3 cut(s)	224, 338, 493
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	2 cut(s)	19, 442
Bst6I	CTCTTC	1 cut(s)	352
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstC8I	GCNNGC	3 cut(s)	424, 469, 556
BstDEI	CTNAG	3 cut(s)	85, 146, 201
BstDSI	CCRYGG	1 cut(s)	216
BstFNI	CGCG	1 cut(s)	172
BstKTI	GATC	3 cut(s)	227, 341, 496
BstMAI	GTCTC	2 cut(s)	149, 573
BstMBI	GATC	3 cut(s)	224, 338, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	776
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	2 cut(s)	333, 760
BstSLI	GKGCMC	1 cut(s)	132
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	2 cut(s)	121, 582
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	1 cut(s)	338
BstXI	CCANNNNNNTGG	2 cut(s)	217, 384
BstYI	RGATCY	1 cut(s)	338
Bsu15I	ATCGAT	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	467, 484
BsuTUI	ATCGAT	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	216
BtsIMutI	CAGTG	3 cut(s)	93, 189, 438
Cac8I	GCNNGC	3 cut(s)	424, 469, 556
CaiI	CAGNNNCTG	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	741
ClaI	ATCGAT	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	2 cut(s)	5, 217
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	3 cut(s)	85, 146, 201
DpnI	GATC	3 cut(s)	226, 340, 495
DpnII	GATC	3 cut(s)	224, 338, 493
DraIII	CACNNNGTG	1 cut(s)	401
EaeI	YGGCCR	1 cut(s)	482
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	741
Eco57I	CTGAAG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	2 cut(s)	6, 781
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	573
FaeI	CATG	2 cut(s)	8, 220
FaqI	GGGAC	2 cut(s)	284, 754
FatI	CATG	2 cut(s)	4, 216
FblI	GTMKAC	3 cut(s)	21, 299, 656
Fnu4HI	GCNGC	3 cut(s)	110, 485, 596
Fsp4HI	GCNGC	3 cut(s)	110, 485, 596
FspBI	CTAG	2 cut(s)	561, 752
GluI	GCNGC	3 cut(s)	110, 485, 596
GsaI	CCCAGC	2 cut(s)	356, 412
HaeIII	GGCC	2 cut(s)	467, 484
HapII	CCGG	1 cut(s)	762
Hin1II	CATG	2 cut(s)	8, 220
HincII	GTYRAC	2 cut(s)	22, 657
HindII	GTYRAC	2 cut(s)	22, 657
HinfI	GANTC	5 cut(s)	9, 197, 206, 243, 607
HpaII	CCGG	1 cut(s)	762
HphI	GGTGA	2 cut(s)	232, 387
Hpy166II	GTNNAC	5 cut(s)	22, 163, 300, 395, 657
Hpy188I	TCNGA	3 cut(s)	149, 202, 682
Hpy8I	GTNNAC	5 cut(s)	22, 163, 300, 395, 657
Hpy99I	CGWCG	2 cut(s)	23, 26
HpyAV	CCTTC	1 cut(s)	731
HpyCH4III	ACNGT	2 cut(s)	19, 442
HpyCH4V	TGCA	6 cut(s)	4, 187, 422, 455, 554, 779
HpyF10VI	GCNNNNNNNGC	1 cut(s)	776
HpyF3I	CTNAG	3 cut(s)	85, 146, 201
Hsp92II	CATG	2 cut(s)	8, 220
Kzo9I	GATC	3 cut(s)	224, 338, 493
LmnI	GCTCC	1 cut(s)	767
Lsp1109I	GCAGC	2 cut(s)	121, 582
LweI	GCATC	1 cut(s)	766
MaeI	CTAG	2 cut(s)	561, 752
MalI	GATC	3 cut(s)	226, 340, 495
MboI	GATC	3 cut(s)	224, 338, 493
MboII	GAAGA	4 cut(s)	206, 369, 644, 663
MflI	RGATCY	1 cut(s)	338
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	2 cut(s)	472, 664
MlyI	GAGTC	1 cut(s)	616
MmeI	TCCRAC	1 cut(s)	714
MnlI	CCTC	6 cut(s)	94, 196, 311, 353, 529, 758
Mph1103I	ATGCAT	2 cut(s)	6, 781
MseI	TTAA	4 cut(s)	63, 446, 717, 756
MslI	CAYNNNNRTG	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	1 cut(s)	762
MspR9I	CCNGG	2 cut(s)	335, 762
Mva1269I	GAATGC	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	335
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	776
NciI	CCSGG	1 cut(s)	762
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	3 cut(s)	224, 338, 493
NlaIII	CATG	2 cut(s)	8, 220
NlaIV	GGNNCC	2 cut(s)	340, 742
NsiI	ATGCAT	2 cut(s)	6, 781
PctI	GAATGC	1 cut(s)	50
PfeI	GAWTC	4 cut(s)	9, 197, 206, 243
PfoI	TCCNGGA	1 cut(s)	760
PkrI	GCNGC	3 cut(s)	111, 486, 597
PleI	GAGTC	1 cut(s)	615
PpsI	GAGTC	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	333
PspFI	CCCAGC	2 cut(s)	352, 408
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	340, 742
PspPI	GGNCC	1 cut(s)	741
PstNI	CAGNNNCTG	1 cut(s)	587
PsuI	RGATCY	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	215
SalI	GTCGAC	2 cut(s)	20, 655
SaqAI	TTAA	4 cut(s)	63, 446, 717, 756
SatI	GCNGC	3 cut(s)	110, 485, 596
Sau3AI	GATC	3 cut(s)	224, 338, 493
Sau96I	GGNCC	1 cut(s)	741
SchI	GAGTC	1 cut(s)	616
ScrFI	CCNGG	2 cut(s)	335, 762
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	4 cut(s)	354, 589, 597, 653
SfaNI	GCATC	1 cut(s)	766
SgrDI	CGTCGACG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	741
SmiMI	CAYNNNNRTG	1 cut(s)	215
SpeI	ACTAGT	1 cut(s)	560
Sse9I	AATT	2 cut(s)	472, 664
SsiI	CCGC	3 cut(s)	342, 485, 626
SspMI	CTAG	2 cut(s)	561, 752
StyD4I	CCNGG	2 cut(s)	333, 760
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	19, 442
TaqI	TCGA	5 cut(s)	21, 227, 327, 605, 656
TaqII	GACCGA	1 cut(s)	758
TasI	AATT	2 cut(s)	472, 664
TatI	WGTACW	1 cut(s)	289
TauI	GCSGC	1 cut(s)	487
TfiI	GAWTC	4 cut(s)	9, 197, 206, 243
Tru1I	TTAA	4 cut(s)	63, 446, 717, 756
Tru9I	TTAA	4 cut(s)	63, 446, 717, 756
TscAI	CASTG	3 cut(s)	93, 196, 445
TseI	GCWGC	2 cut(s)	109, 595
TspDTI	ATGAA	3 cut(s)	245, 636, 663
TspRI	CASTG	3 cut(s)	93, 196, 445
VpaK11BI	GGWCC	1 cut(s)	741
XmiI	GTMKAC	3 cut(s)	21, 299, 656
XspI	CTAG	2 cut(s)	561, 752
Zsp2I	ATGCAT	2 cut(s)	6, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.