Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005725.1

Orthogroup ID

OG0006704

Physical Location & Seq

Genomic Coordinates Forward (+)

16265 .. 17065

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005725.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgcatggattctccaccgtcgacggctttgtggagataactgaatgcttgggagagatgattaagtatgtggcaaacgaaccctcagtggggcttttttatgttcagcagcacactcaaaatgccgtgcccaatctcgttggtctcagaaataatgttgtgaacaagtcgcgtgaaacaactttgcacactgaagattctgaggattccataaccatggtgagatcgatgaaagaatgtggattccccgttgctgatgagatgattagagacatacagaaatctcttgtactttatgtctacaaaacaacaaaaaagagggctaatcgacaaccagggatcagcttttcagctgggaagaggaagttcttggaaaccagccagttggggacttggggtagttcaccaagtgatgcccagcaggatagtggaggcagttatttttccactgtattaaaatctgcaagacaaaaggccagcaatttgaagtggccgcaacttgatcctaaagaactaacagatgtcgcctcctactctaacccaccagtatcagttgctactgcaagcactagttcgtctctgccagatacagaagctgatgagctgcccttgtcgagtcatattacagatgaaccgcaagaagaacaagttgatgagagcttgtcgacacataatttgtcttcattgtcagaaaactttgatgagttcaaggctgataaagaagttaaactacgagagtggttggaagggaccgacaatctagttaatcccggacgagcaagtgatgcagaaagatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BORCS8

Protein Analysis

266

Amino Acids

29.42

Weight (kDa)

4.89

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39170
fragaria_vesca	FvH4_7g18740 FvH4_7g18740 FvH4_7g18740
malus_domestica	MD01G1102900.v1.1
prunus_persica	Prupe.2G208500_v2.0.a1
pyrus_communis	pycom01g12940 pycom07g16340
rosa_chinensis	RchiOBHm_Chr1g0362511 RchiOBHm_Chr1g0384391
rosa_laevigata	RLG00000027640
rosa_multiflora	Rmu_sc0005725.1_g000003 Rmu_sc0015670.1_g000002 Rmu_sc0016737.1_g000010
rosa_roxburghii	Rroxscaffold_4G00294000
rosa_rugosa	Rorug01G0298700
rosa_samantha	Rh1AG308000 Rh1AG472700 Rh1BG271100 Rh1BG430500 Rh1CG288900 Rh1CG443500 Rh1DG301400 Rh1DG463100
rosa_wichuraiana	Rw1G027330 Rw1G039980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	21, 300, 665
AccII	CGCG	1 cut(s)	172
AciI	CCGC	2 cut(s)	494, 635
AclWI	GGATC	2 cut(s)	347, 497
AcoI	YGGCCR	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	213
AdeI	CACNNNGTG	1 cut(s)	410
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	2 cut(s)	89, 90
AgsI	TTSAA	2 cut(s)	487, 709
AhlI	ACTAGT	1 cut(s)	569
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	5 cut(s)	345, 353, 596, 604, 660
AluI	AGCT	5 cut(s)	345, 353, 596, 604, 660
Alw26I	GTCTC	3 cut(s)	149, 264, 582
AlwI	GGATC	2 cut(s)	347, 497
AlwNI	CAGNNNCTG	1 cut(s)	596
AoxI	GGCC	2 cut(s)	474, 491
ApeKI	GCWGC	2 cut(s)	109, 604
ArsI	GACNNNNNNTTYG	2 cut(s)	658, 690
AspS9I	GGNCC	1 cut(s)	750
AsuC2I	CCSGG	1 cut(s)	771
AsuHPI	GGTGA	2 cut(s)	232, 396
AvaII	GGWCC	1 cut(s)	750
BaeGI	GKGCMC	1 cut(s)	132
BarI	GAAGNNNNNNTAC	2 cut(s)	714, 746
BbsI	GAAGAC	1 cut(s)	672
BbvI	GCAGC	2 cut(s)	121, 591
BceAI	ACGGC	2 cut(s)	40, 110
BciT130I	CCWGG	1 cut(s)	336
BcnI	CCSGG	1 cut(s)	771
BcoDI	GTCTC	3 cut(s)	149, 264, 582
BcuI	ACTAGT	1 cut(s)	569
BfaI	CTAG	2 cut(s)	570, 761
BglII	AGATCT	1 cut(s)	794
BisI	GCNGC	3 cut(s)	110, 494, 605
BlsI	GCNGC	3 cut(s)	111, 495, 606
Bme1390I	CCNGG	2 cut(s)	336, 771
Bme18I	GGWCC	1 cut(s)	750
BmgT120I	GGNCC	1 cut(s)	750
BmiI	GGNNCC	1 cut(s)	751
BmrFI	CCNGG	2 cut(s)	336, 771
BmsI	GCATC	2 cut(s)	403, 775
BpiI	GAAGAC	1 cut(s)	672
BpuMI	CCSGG	1 cut(s)	771
Bsa29I	ATCGAT	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	216, 335
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 90
Bse1I	ACTGG	2 cut(s)	382, 545
BseBI	CCWGG	1 cut(s)	336
BseCI	ATCGAT	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	216, 335
BseLI	CCNNNNNNNGG	2 cut(s)	89, 90
BseMII	CTCAG	3 cut(s)	99, 160, 192
BseNI	ACTGG	2 cut(s)	382, 545
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	2 cut(s)	121, 591
BseYI	CCCAGC	2 cut(s)	353, 417
Bsh1236I	CGCG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	476, 493
BshVI	ATCGAT	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	771
BslFI	GGGAC	2 cut(s)	403, 763
BslI	CCNNNNNNNGG	2 cut(s)	89, 90
BsmAI	GTCTC	3 cut(s)	149, 264, 582
BsmBI	CGTCTC	1 cut(s)	582
BsmFI	GGGAC	2 cut(s)	403, 763
BsmI	GAATGC	1 cut(s)	50
BsnI	GGCC	2 cut(s)	476, 493
Bso31I	GGTCTC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	224, 339, 502, 794
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	2 cut(s)	494, 635
BspANI	GGCC	2 cut(s)	476, 493
BspCNI	CTCAG	3 cut(s)	98, 159, 193
BspDI	ATCGAT	1 cut(s)	227
BspFNI	CGCG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	751
BspPI	GGATC	2 cut(s)	347, 497
BspTNI	GGTCTC	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	382, 545
BssECI	CCNNGG	2 cut(s)	216, 335
BssMI	GATC	4 cut(s)	224, 339, 502, 794
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	2 cut(s)	19, 451
Bst6I	CTCTTC	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstC8I	GCNNGC	2 cut(s)	478, 565
BstDEI	CTNAG	4 cut(s)	85, 146, 201, 798
BstDSI	CCRYGG	1 cut(s)	216
BstFNI	CGCG	1 cut(s)	172
BstKTI	GATC	4 cut(s)	227, 342, 505, 797
BstMAI	GTCTC	3 cut(s)	149, 264, 582
BstMBI	GATC	4 cut(s)	224, 339, 502, 794
BstMWI	GCNNNNNNNGC	1 cut(s)	785
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	2 cut(s)	334, 769
BstSLI	GKGCMC	1 cut(s)	132
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	2 cut(s)	121, 591
BstV2I	GAAGAC	1 cut(s)	672
BstX2I	RGATCY	1 cut(s)	794
BstXI	CCANNNNNNTGG	2 cut(s)	217, 385
BstYI	RGATCY	1 cut(s)	794
Bsu15I	ATCGAT	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	476, 493
BsuTUI	ATCGAT	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	216
BtsIMutI	CAGTG	3 cut(s)	93, 189, 447
Cac8I	GCNNGC	2 cut(s)	478, 565
CaiI	CAGNNNCTG	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	750
ClaI	ATCGAT	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	2 cut(s)	5, 217
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	4 cut(s)	85, 146, 201, 798
DpnI	GATC	4 cut(s)	226, 341, 504, 796
DpnII	GATC	4 cut(s)	224, 339, 502, 794
DraIII	CACNNNGTG	1 cut(s)	410
EaeI	YGGCCR	1 cut(s)	491
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	750
Eco57I	CTGAAG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	582
FaeI	CATG	2 cut(s)	8, 220
FaiI	YATR	9 cut(s)	6, 69, 102, 212, 218, 275, 297, 621, 672
FaqI	GGGAC	2 cut(s)	403, 763
FatI	CATG	2 cut(s)	4, 216
FblI	GTMKAC	3 cut(s)	21, 300, 665
Fnu4HI	GCNGC	3 cut(s)	110, 494, 605
Fsp4HI	GCNGC	3 cut(s)	110, 494, 605
FspBI	CTAG	2 cut(s)	570, 761
GluI	GCNGC	3 cut(s)	110, 494, 605
GsaI	CCCAGC	2 cut(s)	357, 421
HaeIII	GGCC	2 cut(s)	476, 493
HapII	CCGG	1 cut(s)	771
Hin1II	CATG	2 cut(s)	8, 220
HincII	GTYRAC	2 cut(s)	22, 666
HindII	GTYRAC	2 cut(s)	22, 666
HinfI	GANTC	5 cut(s)	9, 197, 206, 243, 616
HpaII	CCGG	1 cut(s)	771
HphI	GGTGA	2 cut(s)	232, 396
Hpy166II	GTNNAC	5 cut(s)	22, 163, 301, 404, 666
Hpy188I	TCNGA	3 cut(s)	149, 202, 691
Hpy8I	GTNNAC	5 cut(s)	22, 163, 301, 404, 666
Hpy99I	CGWCG	2 cut(s)	23, 26
HpyAV	CCTTC	1 cut(s)	740
HpyCH4III	ACNGT	2 cut(s)	19, 451
HpyCH4V	TGCA	5 cut(s)	4, 187, 464, 563, 788
HpyF10VI	GCNNNNNNNGC	1 cut(s)	785
HpyF3I	CTNAG	4 cut(s)	85, 146, 201, 798
Hsp92II	CATG	2 cut(s)	8, 220
Kzo9I	GATC	4 cut(s)	224, 339, 502, 794
Lsp1109I	GCAGC	2 cut(s)	121, 591
LweI	GCATC	2 cut(s)	403, 775
MaeI	CTAG	2 cut(s)	570, 761
MalI	GATC	4 cut(s)	226, 341, 504, 796
MboI	GATC	4 cut(s)	224, 339, 502, 794
MboII	GAAGA	4 cut(s)	206, 370, 653, 672
MflI	RGATCY	1 cut(s)	794
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	2 cut(s)	481, 673
MlyI	GAGTC	1 cut(s)	625
MmeI	TCCRAC	1 cut(s)	723
MnlI	CCTC	6 cut(s)	94, 196, 312, 354, 425, 538
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	4 cut(s)	63, 455, 726, 765
MslI	CAYNNNNRTG	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	771
MspR9I	CCNGG	2 cut(s)	336, 771
Mva1269I	GAATGC	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	785
NciI	CCSGG	1 cut(s)	771
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	4 cut(s)	224, 339, 502, 794
NlaIII	CATG	2 cut(s)	8, 220
NlaIV	GGNNCC	1 cut(s)	751
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	50
PfeI	GAWTC	4 cut(s)	9, 197, 206, 243
PfoI	TCCNGGA	1 cut(s)	769
PkrI	GCNGC	3 cut(s)	111, 495, 606
PleI	GAGTC	1 cut(s)	624
PpsI	GAGTC	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	334
PspFI	CCCAGC	2 cut(s)	353, 417
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	751
PspPI	GGNCC	1 cut(s)	750
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	794
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	215
SalI	GTCGAC	2 cut(s)	20, 664
SaqAI	TTAA	4 cut(s)	63, 455, 726, 765
SatI	GCNGC	3 cut(s)	110, 494, 605
Sau3AI	GATC	4 cut(s)	224, 339, 502, 794
Sau96I	GGNCC	1 cut(s)	750
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	2 cut(s)	336, 771
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	5 cut(s)	347, 355, 598, 606, 662
SfaNI	GCATC	2 cut(s)	403, 775
SgrDI	CGTCGACG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	750
SmiMI	CAYNNNNRTG	1 cut(s)	215
SpeI	ACTAGT	1 cut(s)	569
Sse9I	AATT	2 cut(s)	481, 673
SsiI	CCGC	2 cut(s)	494, 635
SspMI	CTAG	2 cut(s)	570, 761
StyD4I	CCNGG	2 cut(s)	334, 769
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	19, 451
TaqI	TCGA	5 cut(s)	21, 227, 328, 614, 665
TaqII	GACCGA	1 cut(s)	767
TasI	AATT	2 cut(s)	481, 673
TatI	WGTACW	1 cut(s)	289
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	4 cut(s)	9, 197, 206, 243
Tru1I	TTAA	4 cut(s)	63, 455, 726, 765
Tru9I	TTAA	4 cut(s)	63, 455, 726, 765
TscAI	CASTG	3 cut(s)	93, 196, 454
TseI	GCWGC	2 cut(s)	109, 604
TspDTI	ATGAA	3 cut(s)	245, 645, 672
TspRI	CASTG	3 cut(s)	93, 196, 454
VpaK11BI	GGWCC	1 cut(s)	750
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmiI	GTMKAC	3 cut(s)	21, 300, 665
XspI	CTAG	2 cut(s)	570, 761
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.