Rw1G039980

BLOC-1-related complex sub-unit 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0006704
Physical Location & Seq
Reverse (-)
67459103 .. 67459903
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G039980.1

Sequence Viewer

Length: 801 bp
ATGCATGGATTCTCCACCGTCGACGGCTTTGTGGAGATAACTGAATGCTTGGGAGAGATGATTAAGTATGTGGCAAACGAACCCTCAGTGGGGCTTTATTATGTTCAGCAGCACACTCAAAATGCGGTGCCCAATCTCGTTGGTCTCAGAAATAATGTTGTGAACAAGTCGCTTGAAACAACTTTGCACACTGAAGATTCTGAGGATTCCATAACCATGGTGAGATCGATGAAAGAATGTGGATTCCCCGTTGCTGATGAGATGATTAGAGACATACAGAAATCTCTTGTACTTTATGTCTACAAAACAACAAAAAAGAGGGCCAATCGACAACCAGGGATCAGCTTTTCAGCTGGGAAGAGGAAGTTCTTGGAAACCAGCCAGTTGGGGACTTGGGGTAGTTCACCAAGTGATGCCCAGCAGGATAGTGGAGGCAGTTATTTTTCCACTGTATTAAAATCTGCAAGACAAAAGGCCAGCAATTTGAAGTGGCCGCAACTTGACCCTAAAGAACTAACAGAGGTCGCCTCCTACTGTAACCCACCAGTATCAGTTGCTACTGCAAGCACTAGTTCGTCTCTGCCAGATACAGAAGCTGATGAGCTGCCCTTGTCGAGCCATATTACAGATGAACCGCAAGAAGAACAAGTTGATGAGAGCTTGTCGACCCATAATTTGTCTTCATTGTCAGAAAACTTTGATGTGTTCAAGGCTGATAAAGAAGTTAAACTACGAGAGTGGTTGGAAGGGACCGACAATCTAGTTAATCCCGGACGAGCAAGTGATGCAGAAAGATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BORCS8

Protein Analysis

266

Amino Acids

29.39

Weight (kDa)

4.88

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BORCS8 PF10167 5 - 107 1.7e-26 BLOC-1-related complex sub-unit 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 127
AccI GTMKAC 3 cut(s) 21, 300, 665
AciI CCGC 3 cut(s) 125, 494, 635
AclWI GGATC 1 cut(s) 347
AcoI YGGCCR 1 cut(s) 491
AcuI CTGAAG 1 cut(s) 213
AdeI CACNNNGTG 1 cut(s) 410
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 2 cut(s) 89, 90
AgsI TTSAA 3 cut(s) 176, 487, 709
AhlI ACTAGT 1 cut(s) 569
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 5 cut(s) 345, 353, 596, 604, 660
AluI AGCT 5 cut(s) 345, 353, 596, 604, 660
Alw26I GTCTC 3 cut(s) 149, 264, 582
AlwI GGATC 1 cut(s) 347
AlwNI CAGNNNCTG 1 cut(s) 596
AoxI GGCC 3 cut(s) 321, 474, 491
ApeKI GCWGC 2 cut(s) 109, 604
ArsI GACNNNNNNTTYG 2 cut(s) 658, 690
AspS9I GGNCC 2 cut(s) 321, 750
AsuC2I CCSGG 1 cut(s) 771
AsuHPI GGTGA 2 cut(s) 232, 396
AvaII GGWCC 1 cut(s) 750
BaeGI GKGCMC 1 cut(s) 132
BanI GGYRCC 1 cut(s) 127
BarI GAAGNNNNNNTAC 2 cut(s) 714, 746
BbsI GAAGAC 1 cut(s) 672
BbvI GCAGC 2 cut(s) 121, 591
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 336
BcnI CCSGG 1 cut(s) 771
BcoDI GTCTC 3 cut(s) 149, 264, 582
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 2 cut(s) 570, 761
BglII AGATCT 1 cut(s) 794
BisI GCNGC 3 cut(s) 110, 494, 605
BlsI GCNGC 3 cut(s) 111, 495, 606
Bme1390I CCNGG 2 cut(s) 336, 771
Bme18I GGWCC 1 cut(s) 750
BmgT120I GGNCC 2 cut(s) 321, 750
BmiI GGNNCC 2 cut(s) 129, 751
BmrFI CCNGG 2 cut(s) 336, 771
BmsI GCATC 2 cut(s) 403, 775
BpiI GAAGAC 1 cut(s) 672
BplI GAGNNNNNCTC 2 cut(s) 512, 544
BpuMI CCSGG 1 cut(s) 771
Bsa29I ATCGAT 1 cut(s) 227
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 216, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 90
Bse1I ACTGG 2 cut(s) 382, 545
BseBI CCWGG 1 cut(s) 336
BseCI ATCGAT 1 cut(s) 227
BseDI CCNNGG 2 cut(s) 216, 335
BseLI CCNNNNNNNGG 2 cut(s) 89, 90
BseMII CTCAG 3 cut(s) 99, 160, 192
BseNI ACTGG 2 cut(s) 382, 545
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 2 cut(s) 121, 591
BseYI CCCAGC 2 cut(s) 353, 417
BshFI GGCC 3 cut(s) 323, 476, 493
BshNI GGYRCC 1 cut(s) 127
BshVI ATCGAT 1 cut(s) 227
BsiSI CCGG 1 cut(s) 771
BslFI GGGAC 2 cut(s) 403, 763
BslI CCNNNNNNNGG 2 cut(s) 89, 90
BsmAI GTCTC 3 cut(s) 149, 264, 582
BsmBI CGTCTC 1 cut(s) 582
BsmFI GGGAC 2 cut(s) 403, 763
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 3 cut(s) 323, 476, 493
Bso31I GGTCTC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 3 cut(s) 224, 339, 794
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 3 cut(s) 125, 494, 635
BspANI GGCC 3 cut(s) 323, 476, 493
BspCNI CTCAG 3 cut(s) 98, 159, 193
BspDI ATCGAT 1 cut(s) 227
BspLI GGNNCC 2 cut(s) 129, 751
BspPI GGATC 1 cut(s) 347
BspT107I GGYRCC 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 149
BsrI ACTGG 2 cut(s) 382, 545
BssECI CCNNGG 2 cut(s) 216, 335
BssMI GATC 3 cut(s) 224, 339, 794
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 3 cut(s) 19, 451, 536
Bst6I CTCTTC 1 cut(s) 353
BstAPI GCANNNNNTGC 1 cut(s) 785
BstC8I GCNNGC 2 cut(s) 478, 565
BstDEI CTNAG 4 cut(s) 85, 146, 201, 798
BstDSI CCRYGG 1 cut(s) 216
BstKTI GATC 3 cut(s) 227, 342, 797
BstMAI GTCTC 3 cut(s) 149, 264, 582
BstMBI GATC 3 cut(s) 224, 339, 794
BstMWI GCNNNNNNNGC 1 cut(s) 785
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 2 cut(s) 334, 769
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 121, 591
BstV2I GAAGAC 1 cut(s) 672
BstX2I RGATCY 1 cut(s) 794
BstXI CCANNNNNNTGG 2 cut(s) 217, 385
BstYI RGATCY 1 cut(s) 794
Bsu15I ATCGAT 1 cut(s) 227
BsuRI GGCC 3 cut(s) 323, 476, 493
BsuTUI ATCGAT 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 216
BtsIMutI CAGTG 3 cut(s) 93, 189, 447
Cac8I GCNNGC 2 cut(s) 478, 565
CaiI CAGNNNCTG 1 cut(s) 596
Cfr13I GGNCC 2 cut(s) 321, 750
ClaI ATCGAT 1 cut(s) 227
Csp6I GTAC 1 cut(s) 290
CviAII CATG 2 cut(s) 5, 217
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 4 cut(s) 85, 146, 201, 798
DpnI GATC 3 cut(s) 226, 341, 796
DpnII GATC 3 cut(s) 224, 339, 794
DraIII CACNNNGTG 1 cut(s) 410
EaeI YGGCCR 1 cut(s) 491
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 750
Eco57I CTGAAG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 582
FaeI CATG 2 cut(s) 8, 220
FaiI YATR 9 cut(s) 6, 69, 102, 212, 218, 275, 297, 621, 672
FaqI GGGAC 2 cut(s) 403, 763
FatI CATG 2 cut(s) 4, 216
FblI GTMKAC 3 cut(s) 21, 300, 665
Fnu4HI GCNGC 3 cut(s) 110, 494, 605
Fsp4HI GCNGC 3 cut(s) 110, 494, 605
FspBI CTAG 2 cut(s) 570, 761
GluI GCNGC 3 cut(s) 110, 494, 605
GsaI CCCAGC 2 cut(s) 357, 421
HaeIII GGCC 3 cut(s) 323, 476, 493
HapII CCGG 1 cut(s) 771
Hin1II CATG 2 cut(s) 8, 220
HincII GTYRAC 2 cut(s) 22, 666
HindII GTYRAC 2 cut(s) 22, 666
HinfI GANTC 4 cut(s) 9, 197, 206, 243
HpaII CCGG 1 cut(s) 771
HphI GGTGA 2 cut(s) 232, 396
Hpy166II GTNNAC 5 cut(s) 22, 163, 301, 404, 666
Hpy188I TCNGA 3 cut(s) 149, 202, 691
Hpy8I GTNNAC 5 cut(s) 22, 163, 301, 404, 666
Hpy99I CGWCG 2 cut(s) 23, 26
HpyAV CCTTC 1 cut(s) 740
HpyCH4III ACNGT 3 cut(s) 19, 451, 536
HpyCH4V TGCA 5 cut(s) 4, 187, 464, 563, 788
HpyF10VI GCNNNNNNNGC 1 cut(s) 785
HpyF3I CTNAG 4 cut(s) 85, 146, 201, 798
Hsp92II CATG 2 cut(s) 8, 220
Kzo9I GATC 3 cut(s) 224, 339, 794
Lsp1109I GCAGC 2 cut(s) 121, 591
LweI GCATC 2 cut(s) 403, 775
MaeI CTAG 2 cut(s) 570, 761
MaeIII GTNAC 1 cut(s) 536
MalI GATC 3 cut(s) 226, 341, 796
MboI GATC 3 cut(s) 224, 339, 794
MboII GAAGA 4 cut(s) 206, 370, 653, 672
MflI RGATCY 1 cut(s) 794
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 2 cut(s) 481, 673
MmeI TCCRAC 1 cut(s) 723
MnlI CCTC 7 cut(s) 94, 196, 312, 354, 425, 514, 538
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 4 cut(s) 63, 455, 726, 765
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 1 cut(s) 771
MspR9I CCNGG 2 cut(s) 336, 771
Mva1269I GAATGC 1 cut(s) 50
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 785
NciI CCSGG 1 cut(s) 771
NcoI CCATGG 1 cut(s) 216
NdeII GATC 3 cut(s) 224, 339, 794
NlaIII CATG 2 cut(s) 8, 220
NlaIV GGNNCC 2 cut(s) 129, 751
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 50
PfeI GAWTC 4 cut(s) 9, 197, 206, 243
PfoI TCCNGGA 1 cut(s) 769
PkrI GCNGC 3 cut(s) 111, 495, 606
Psp6I CCWGG 1 cut(s) 334
PspFI CCCAGC 2 cut(s) 353, 417
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 129, 751
PspPI GGNCC 2 cut(s) 321, 750
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 1 cut(s) 794
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 215
SalI GTCGAC 2 cut(s) 20, 664
SaqAI TTAA 4 cut(s) 63, 455, 726, 765
SatI GCNGC 3 cut(s) 110, 494, 605
Sau3AI GATC 3 cut(s) 224, 339, 794
Sau96I GGNCC 2 cut(s) 321, 750
ScrFI CCNGG 2 cut(s) 336, 771
SduI GDGCHC 1 cut(s) 132
SetI ASST 6 cut(s) 347, 355, 525, 598, 606, 662
SfaNI GCATC 2 cut(s) 403, 775
SgrDI CGTCGACG 1 cut(s) 20
SinI GGWCC 1 cut(s) 750
SmiMI CAYNNNNRTG 1 cut(s) 215
SpeI ACTAGT 1 cut(s) 569
Sse9I AATT 2 cut(s) 481, 673
SsiI CCGC 3 cut(s) 125, 494, 635
SspMI CTAG 2 cut(s) 570, 761
StyD4I CCNGG 2 cut(s) 334, 769
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 3 cut(s) 19, 451, 536
TaqI TCGA 5 cut(s) 21, 227, 328, 614, 665
TaqII GACCGA 1 cut(s) 767
TasI AATT 2 cut(s) 481, 673
TatI WGTACW 1 cut(s) 289
TauI GCSGC 1 cut(s) 496
TfiI GAWTC 4 cut(s) 9, 197, 206, 243
Tru1I TTAA 4 cut(s) 63, 455, 726, 765
Tru9I TTAA 4 cut(s) 63, 455, 726, 765
TscAI CASTG 3 cut(s) 93, 196, 454
TseI GCWGC 2 cut(s) 109, 604
TspDTI ATGAA 3 cut(s) 245, 645, 672
TspRI CASTG 3 cut(s) 93, 196, 454
VpaK11BI GGWCC 1 cut(s) 750
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XmiI GTMKAC 3 cut(s) 21, 300, 665
XspI CTAG 2 cut(s) 570, 761
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.